Crystal structure of prunin-1, A major component of the almond (Prunus dulcis) allergen amandin

Journal of Agricultural and Food Chemistry

Volumn 57, Issue 18, 2009, Pages 8643-8651

  Tengchuan, Jin ^a,d   Albillos, Silvia M ^b,e   Feng, Guo ^a   Howard, Andrew ^a   Tong Jen, Fu ^c   Kothary, Mahendra H ^c   Zhang, Yu Zhu ^a,b  

^a Illinois Institute of Technology   (United States)

^b ILLINOIS INSTITUTE OF TECHNOLOGY   (United States)

^c CENTER FOR DRUG EVALUATION AND RESEARCH   (United States)

^d NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^e Institute of Biotechnology INBIOTEC Parque Científico de León   (Spain)

Author keywords

Almond (prunus dulcis); Amandin; Food allergy; Pru1; Prunin; X ray crystallography

Indexed keywords

ALLERGEN; AMANDIN; GLOBULIN; PEPTIDE; PRUNIN PROTEIN, PRUNUS; VEGETABLE PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; CRYSTALLIZATION; IMMUNOLOGY; PLANT SEED; PRUNUS; X RAY CRYSTALLOGRAPHY;

ALLERGENS; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; GLOBULINS; MODELS, MOLECULAR; PEPTIDES; PLANT PROTEINS; PRUNUS; SEEDS;

ARA; ARACHIS HYPOGAEA; CONIFEROPHYTA; GYMNOSPERMAE; PRUNUS DULCIS; SPERMATOPHYTA;

EID: 70349314612     PISSN: 00218561     EISSN: None     Source Type: Journal    
DOI: 10.1021/jf9017355     Document Type: Article

References (63)

1. Utsumi, S. Plant food protein engineering. Adv. Food Nutr. Res. 1992, 36, 89-208.
2. Shewry, P. R. Plant storage proteins. Biol. Rev. Camb. Philos. Soc. 1995, 70, 375-426.
3. Branum, A. M.; Lukacs, S. L. Food Allergy among U.S. Children: Trends in Prevalence and Hospitalizations. NCHS data brief No. 10. Hyattsville, MD: National Center for Health Statistics, 2008.
4. Sampson, H. A. Update on food allergy. J. Allergy Clin. Immunol. 2004, 113, 805-819; quiz 820.
5. Wang, J.; Sampson, H. A. Food anaphylaxis. Clin. Exp. Allergy 2007, 37, 651-660.
6. Gallardo, K.; Job, C.; Groot, S. P.; Puype, M.; Demol, H.; Vandekerckhove, J.; Job, D. Proteomic analysis of arabidopsis seed germination and priming. Plant Physiol. 2001, 126, 835-848. (Pubitemid 32566632)
7. Mooney, B. P.; Krishnan, H. B.; Thelen, J. J. High-throughput peptide mass fingerprinting of soybean seed proteins: Automated workflow and utility of UniGene expressed sequence tag databases for protein identification. Phytochemistry 2004, 65, 1733-1744.
8. Rabjohn, P.; Helm, E. M.; Stanley, J. S.; West, C. M.; Sampson, H. A.; Burks, A. W.; Bannon, G. A. Molecular cloning and epitope analysis of the peanut allergen Ara h 3. J. Clin. Invest. 1999, 103, 535-542.
9. Beyer, K.; Grishina, G.; Bardina, L.; Grishin, A.; Sampson, H. A. Identification of an 11S globulin as a major hazelnut food allergen in hazelnut-induced systemic reactions. J. Allergy Clin. Immunol. 2002, 110, 517-523.
10. Wallowitz, M.; Peterson, W. R.; Uratsu, S.; Comstock, S. S.; Dandekar, A. M.; Teuber, S. S. Jug r 4, a legumin group food allergen from walnut (Jugions regia Cv. Chandler). J. Agric. Food Chem. 2006, 54, 8369-8375.
11. Wang, F.; Robotham, J. M.; Teuber, S. S.; Sathe, S. K.; Roux, K. H. Ana o 2, a major cashew (Anacardium occidentale L.) nut allergen of the legumin family. Int. Arch. Allergy Immunol. 2003, 132, 27-39.
12. Palomares, O.; Cuesta-Herranz, J.; Vereda, A.; Sirvent, S.; Villalba, M.; Rodriguez, R. Isolation and identification of an 1 IS globulin as a new major allergen in mustard seeds. Ann. Allergy Asthma Immunol. 2005, 94, 586-592.
13. Hsiao, E. S.; Lin, L. J.; Li, F. Y.; Wang, M. M.; Liao, M. Y.; Tzen, J. T. Gene families encoding isoforms of two major sesame seed storage proteins, HS globulin and 2S albumin. J. Agric. Food Chem. 2006, 54, 9544-19450
14. Roux, K. H.; Sathe, S. K.; Peterson, W. R.; Teuber, S. S. The major seed storage protein of almond (almond major protein) is an allergen. J. Allergy Clin. Immunol. 1999, 103, S66.
15. Angus, F. Nut allergens. In Natural Toxicants in Foods; Watson, D. H., Ed.; CRC Press LLC: Boca Raton, FL, 1998; pp 84-104.
16. Food and Agriculture Organization of the United Nations, Report of the FAO Technical Consultation on Food Allergies; November 13-14, 1995.
17. U.S. Food and Drug Administration, Section 555-250 Statement of policy for labeling and preventing cross-contact of common food allergens. Revised 2005. Webpage: http://www.fda.gov/ora/compliance-refcpg/cpgfod/cpg555-250.htm (Accessed: May 26, 2007).
18. Lehrer, S. B.; Ayuso, R.; Reese, G. Current understanding of food allergens. Ann. N. Y. Acad. Sci. 2002, 964, 69-85.
19. Crespo, J. F.; James, J. M.; Fernandez-Rodriguez, C.; Rodriguez, J. Food allergy: Nuts and tree nuts. Br. J. Nutr. 2006, 96 (Suppl. 2), S95-S102.
20. Schreiber, R. A.; Walker, W. A. Food allergy: Facts and fiction. Mayo Clin. Proc. 1989, 64, 1381-1391.
21. Sicherer, S. H. Clinical update on peanut allergy. Ann. Allergy Asthma Immunol. 2002, 88, 350-361; quiz 361-362, 394.
22. Hourihane, J. O. Prevalence and severity of food allergy-Need for control. Allergy 1998, 53, 84-88.
23. Sampson, H. A. Food allergy. Part 1: Immunopathogenesis and clinical disorders. J. Allergy Clin. Immunol. 1999, 103, 717-728. (Pubitemid 29297569)
24. Sicherer, S. H.; Burks, A. W.; Sampson, H. A. Clinical features of acute allergic reactions to peanut and tree nuts in children. Pediatrics 1998, 102, e6.
25. Roux, K. H.; Teuber, S. S.; Robotham, J. M.; Sathe, S. K. Detection and stability of the major almond allergen in foods. J. Agric. Food Chem. 2001, 49, 2131-2136.
26. Svedberg, T.; Sjogren, B. The molecular weights of amandin and excelsin. J. Am. Chem. Soc. 1930, 52, 279-287.
27. Wolf, W. J. Gel electrophoresis and amino acid analysis of the nonprotein nitrogen fractions of defatted soybean and almond meals. Cereal Chem. 1995, 72, 115-121.
28. Sathe, S. K. Solubilization, electrophoretic characterization and in vitro digestibility of almond (Prunus amygdalus) proteins. J. Food Biochem. 1993, 16, 249-264.
29. Garcia-Mas, J.; Messeguer, R.; Arus, P.; Puigdomenech, P. Molecular characterization of cDNAs corresponding to genes expressed during almond (Prunus amygdalus Batsch) seed development. Plant Mol. Biol. 1995, 27, 205-210.
30. Albulos, S. M.; Jin, T.; Howard, A.; Zhang, Y.; Kothary, M. H.; Fu, T. J. Purification, crystallization and preliminary X-ray characterization of prunin-1, a major component of the almond (Prunus dulcis) allergen amandin. J. Agric. Food Chem. 2008, 56, 5352-5358.
31. Albulos, S. M.; Menhart, N.; Fu, T.-J. Structural stability of amendin, a major allergen from almond (Prunus dulcis), and its acidic and basic polypepides. J. Agric. Food Chem. 2009, 57, 4698-4705.
32. Bock, S. A.; Munoz-Furlong, A.; Sampson, H. A. Fatalities due to anaphylactic reactions to foods. J. Allergy Clin. Immunol. 2001, 107, 191-193. (Pubitemid 32105265)
33. Untersmayr, E.; Jensen-Jarolim, E. Mechanisms of type I food allergy. Pharmacol. Ther. 2006, 112, 787-798.
34. Grimshaw, K. E. Dietary management of food allergy in children. Proc. Nutr. Soc. 2006, 65, 112-417.
35. Cooke, R. A.; Barnard, J. H.; Hebald, S.; et al. Serological evidence of immunity with coexisting sensitization in a type of human allergy (hay fever). J. Exp. Med. 1935, 62, 733-750.
36. Bousquet, J.; Lockey, R.; Mailing, H. J.; Alvarez-Cuesta, E.; Canonica, G. W.; Chapman, M. D.; Creticos, P. J.; Dayer, J. M.; Durham, S. R.; Demoly, P.; Goldstein, R. J.; Ishikawa, T.; Ito, K.; Kraft, D.; Lambert, P. H.; Lowenstein, H.; Muller, U.; Norman, P. S.; Reisman, R. E.; Valenta, R.; Valovirta, E.; Yssel, H. Allergen immunotherapy: Therapeutic vaccines for allergic diseases. World Health Organization. American Academy of Allergy, Asthma and Immunology. Ann. Allergy Asthma Immunol. 1998, 81, 401-405.
37. Nieuwenhuizen, N. E.; Lopata, A. L. Fighting food allergy: Current approaches. Ann. N. Y. Acad. Sci. 2005, 1056, 30-45. (Pubitemid 43030965)
38. de Leon, M. P.; Rolland, J. M.; O'Hehir, R, E. The peanut allergy epidemic: Allergen molecular characterisation and prospects for specific therapy. Expert Rev. Mol. Med. 2007, 9, 1-18. (Pubitemid 46071033)
39. Rolland, J. M.; Douglass, J.; O'Hehir, R. E. Allergen immunotherapy: Current and new therapeutic strategies. Expert Opin. Invest. Drugs 2000, 9, 515-527. (Pubitemid 30119690)
40. Bohle, B. T-cell epitopes of food allergens. Clin. Rev. Allergy Immunol. 2006, 30, 97-108.
41. Tanabe, S. Epitope peptides and immunotherapy. Curr. Protein Pept. Sci. 2007, 5, 109-118.
42. Nowak-Wegrzyn, A.; Bloom, K. A.; Sicherer, S. H.; Shreffler, W. G.; Noone, S.; Wanich, N.; Sampson, H. A. Tolerance to extensively heated milk in children with cow's milk allergy. J. Allergy Clin. Immunol. 2008, 122, 342-347, 347 el-2.
43. McCoy, A. J.; Grosse-Kunstleve, R. W.; Storoni, L. C.; Read, R. J. Likelihood-enhanced fast translation functions. Acta Crystallogr. 2005, D61, 458-464.
44. Storoni, L. C.; McCoy, A. J.; Read, R. J. Likelihood-enhanced fast rotation functions. Acta Crystallogr. 2004, D60, 432-438.
45. Potterton, E.; Briggs, P.; Turkenburg, M.; Dodson, E. A graphical user interface to the CCP4 program suite. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2003, 59, 1131-1137. (Pubitemid 36872348)
46. Brunger, A. T.; Adams, P. D.; Clore, G. M.; DeLano, W. L.; Gros, P.; Grosse-Kunstleve, R. W.; Jiang, J. S.; Kuszewski, J.; Nilges, M.; Pannu, N. S.; Read, R. J.; Rice, L. M.; Simonson, T.; Warren, G. L. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. 1998, D54, 905-921.
47. Vagin, A. A.; Steiner, R. A.; Lebedev, A. A.; Potterton, L.; McNicholas, S.; Long, F.; Murshudov, G. N. REFMAC5 dictionary: Organization of prior chemical knowledge and guidelines for its use. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2184-2195.
48. Emsley, P.; Cowtan, K. Coot: Model-building tools for molecular graphics. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2126-2132.
49. Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 1993, 26, 283-291.
50. Lovell, S. C.; Davis, I. W.; Arendall, W. B.3rd; de Bakker, P. I.; Word, J. M.; Prisant, M. G.; Richardson, J. S.; Richardson, D. C. Structure validation by Calpha geometry: phi,psi and Cbeta deviation. Proteins 2003, 50, 437-450.
51. Sayle, R. A.; Milner-White, E. J. RASMOL: Biomolecular graphics for all. Trends Biochem. Sci. 1995, 20, 374.
52. Kraulis, P. J. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 1991, 24, 946-950.
53. Merritt, E. A.; Murphy, M. E. Raster3D Version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr. 1994, D50, 869-873.
54. PyMol homepage. Webpage: http://pymol.org/ (Accessed: May 26, 2007).
55. Konagurthu, A. S.; Whisstock, J. C.; Stuckey, P. J.; Lesk, A. M. MUSTANG: A multiple structural alignment algorithm. Proteins 2006, 64, 559-574.
56. Kao, O. H.; Berns, D. S.; Town, W. R. The characterization of C-phycocyanin from an extremely halo-tolerant blue-green alga, Coccochloris elabens. Biochem. J. 1973, 131, 39-50.
57. Jin, T.; Guo, F.; Chen, Y.-w.; Howard, A.; Zhang, Y.-Z. Crystal structure of Ara h 3, a major allergen in peanut. Mol. Immunol. 2009, 46, 1796-1804.
58. Adachi, M.; Kanamori, J.; Masuda, T.; Yagasaki, K.; Kitamura, K.; Mikami, B.; Utsumi, S. Crystal structure of soybean 11S globulin: glycinin A3B4 homohexamer. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 7395-7400. (Pubitemid 36706448)
59. Guo, F.; Jin, T.; Howard, A.; Zhang, Y. Z. Purification, crystallization and initial crystallographic characterization of brazil-nut allergen Ber e 2. Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 2007, 63, 976-979. (Pubitemid 350134972)
60. Jin, T.; Howard, A.; Zhang, Y. Z. Purification, crystallization and initial crystallographic characterization of peanut major allergen Ara h 3. Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 2007, 63, 848-851. (Pubitemid 47511897)
61. Badley, R. A.; Atkinson, D.; Hauser, H.; Oldani, D.; Green, J. P.; Stubb, J. M. The structure, physical and chemical properties of the soy bean protein glycinin. Biochim. Biophys. Acta 1975, 412, 214-228.
62. Dickinson, C. D.; Hussein, E. H.; Nielsen, N. C. Role of posttranslational cleavage in glycinin assembly. Plant Cell 1989, 1, 459-469.
63. Hansen, K. S.; Ballmer-Weber, B. K.; Luttkopf, D.; Skov, P. S.; Wuthrich, B.; Bindslev-Jensen, C.; Vieths, S.; Poulsen, L. K. Roasted hazelnuts-Allergenic activity evaluated by double-blind, placebocontrolled food challenge. Allergy 2003, 55, 132-138.