메뉴 건너뛰기




Volumn 35, Issue 6, 2009, Pages 889-902

Interaction of Transcriptional Regulators with Specific Nucleosomes across the Saccharomyces Genome

Author keywords

DNA

Indexed keywords

ADENOSINE TRIPHOSPHATASES; BINDING SITES; CHROMATIN ASSEMBLY AND DISASSEMBLY; DNA POLYMERASE II; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, FUNGAL; GENOME, FUNGAL; GUANINE NUCLEOTIDE EXCHANGE FACTORS; HISTONE ACETYLTRANSFERASES; HISTONES; MULTIPROTEIN COMPLEXES; MUTATION; NUCLEAR PROTEINS; NUCLEIC ACID CONFORMATION; NUCLEOSOMES; PROMOTER REGIONS, GENETIC; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TELOMERE-BINDING PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 70349173215     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2009.09.011     Document Type: Article
Times cited : (98)

References (57)
  • 1
    • 0025149080 scopus 로고
    • A yeast mutant, PRP20, altered in mRNA metabolism and maintenance of the nuclear structure, is defective in a gene homologous to the human gene RCC1 which is involved in the control of chromosome condensation
    • Aebi M., Clark M.W., Vijayraghavan U., and Abelson J. A yeast mutant, PRP20, altered in mRNA metabolism and maintenance of the nuclear structure, is defective in a gene homologous to the human gene RCC1 which is involved in the control of chromosome condensation. Mol. Gen. Genet. 224 (1990) 72-80
    • (1990) Mol. Gen. Genet. , vol.224 , pp. 72-80
    • Aebi, M.1    Clark, M.W.2    Vijayraghavan, U.3    Abelson, J.4
  • 2
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • Albert I., Mavrich T.N., Tomsho L.P., Qi J., Zanton S.J., Schuster S.C., and Pugh B.F. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446 (2007) 572-576
    • (2007) Nature , vol.446 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6    Pugh, B.F.7
  • 3
    • 43349089437 scopus 로고    scopus 로고
    • GeneTrack-a genomic data processing and visualization framework
    • Albert I., Wachi S., Jiang C., and Pugh B.F. GeneTrack-a genomic data processing and visualization framework. Bioinformatics 24 (2008) 1305-1306
    • (2008) Bioinformatics , vol.24 , pp. 1305-1306
    • Albert, I.1    Wachi, S.2    Jiang, C.3    Pugh, B.F.4
  • 4
    • 0033567954 scopus 로고    scopus 로고
    • NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p
    • Allard S., Utley R.T., Savard J., Clarke A., Grant P., Brandl C.J., Pillus L., Workman J.L., and Cote J. NuA4, an essential transcription adaptor/histone H4 acetyltransferase complex containing Esa1p and the ATM-related cofactor Tra1p. EMBO J. 18 (1999) 5108-5119
    • (1999) EMBO J. , vol.18 , pp. 5108-5119
    • Allard, S.1    Utley, R.T.2    Savard, J.3    Clarke, A.4    Grant, P.5    Brandl, C.J.6    Pillus, L.7    Workman, J.L.8    Cote, J.9
  • 5
    • 0030699322 scopus 로고    scopus 로고
    • The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast
    • Angermayr M., and Bandlow W. The general regulatory factor Reb1p controls basal, but not Gal4p-mediated, transcription of the GCY1 gene in yeast. Mol. Gen. Genet. 256 (1997) 682-689
    • (1997) Mol. Gen. Genet. , vol.256 , pp. 682-689
    • Angermayr, M.1    Bandlow, W.2
  • 10
    • 33751528593 scopus 로고    scopus 로고
    • A chromatin-mediated mechanism for specification of conditional transcription factor targets
    • Buck M.J., and Lieb J.D. A chromatin-mediated mechanism for specification of conditional transcription factor targets. Nat. Genet. 38 (2006) 1446-1451
    • (2006) Nat. Genet. , vol.38 , pp. 1446-1451
    • Buck, M.J.1    Lieb, J.D.2
  • 11
    • 33750453345 scopus 로고    scopus 로고
    • RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation
    • Carey M., Li B., and Workman J.L. RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation. Mol. Cell 24 (2006) 481-487
    • (2006) Mol. Cell , vol.24 , pp. 481-487
    • Carey, M.1    Li, B.2    Workman, J.L.3
  • 12
    • 36849004886 scopus 로고    scopus 로고
    • Domain architecture of the catalytic subunit in the ISW2-nucleosome complex
    • Dang W., and Bartholomew B. Domain architecture of the catalytic subunit in the ISW2-nucleosome complex. Mol. Cell. Biol. 27 (2007) 8306-8317
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 8306-8317
    • Dang, W.1    Bartholomew, B.2
  • 14
    • 33947137710 scopus 로고    scopus 로고
    • Dynamics of replication-independent histone turnover in budding yeast
    • Dion M.F., Kaplan T., Kim M., Buratowski S., Friedman N., and Rando O.J. Dynamics of replication-independent histone turnover in budding yeast. Science 315 (2007) 1405-1408
    • (2007) Science , vol.315 , pp. 1405-1408
    • Dion, M.F.1    Kaplan, T.2    Kim, M.3    Buratowski, S.4    Friedman, N.5    Rando, O.J.6
  • 15
    • 34547226085 scopus 로고    scopus 로고
    • NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome
    • Durant M., and Pugh B.F. NuA4-directed chromatin transactions throughout the Saccharomyces cerevisiae genome. Mol. Cell. Biol. 27 (2007) 5327-5335
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 5327-5335
    • Durant, M.1    Pugh, B.F.2
  • 17
    • 0029910365 scopus 로고    scopus 로고
    • Heat shock factor gains access to the yeast HSC82 promoter independently of other sequence-specific factors and antagonizes nucleosomal repression of basal and induced transcription
    • Erkine A.M., Adams C.C., Diken T., and Gross D.S. Heat shock factor gains access to the yeast HSC82 promoter independently of other sequence-specific factors and antagonizes nucleosomal repression of basal and induced transcription. Mol. Cell. Biol. 16 (1996) 7004-7017
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 7004-7017
    • Erkine, A.M.1    Adams, C.C.2    Diken, T.3    Gross, D.S.4
  • 18
    • 33845783756 scopus 로고    scopus 로고
    • Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction
    • Garbett K.A., Tripathi M.K., Cencki B., Layer J.H., and Weil P.A. Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction. Mol. Cell. Biol. 27 (2007) 297-311
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 297-311
    • Garbett, K.A.1    Tripathi, M.K.2    Cencki, B.3    Layer, J.H.4    Weil, P.A.5
  • 19
    • 0034109318 scopus 로고    scopus 로고
    • The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more
    • Gartenberg M.R. The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more. Curr. Opin. Microbiol. 3 (2000) 132-137
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 132-137
    • Gartenberg, M.R.1
  • 20
    • 0035016612 scopus 로고    scopus 로고
    • Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates
    • Gelbart M.E., Rechsteiner T., Richmond T.J., and Tsukiyama T. Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Mol. Cell. Biol. 21 (2001) 2098-2106
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 2098-2106
    • Gelbart, M.E.1    Rechsteiner, T.2    Richmond, T.J.3    Tsukiyama, T.4
  • 22
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • Hartley P.D., and Madhani H.D. Mechanisms that specify promoter nucleosome location and identity. Cell 137 (2009) 445-458
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 23
    • 0035937419 scopus 로고    scopus 로고
    • Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes
    • Hassan A.H., Neely K.E., and Workman J.L. Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes. Cell 104 (2001) 817-827
    • (2001) Cell , vol.104 , pp. 817-827
    • Hassan, A.H.1    Neely, K.E.2    Workman, J.L.3
  • 24
    • 0036847620 scopus 로고    scopus 로고
    • Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes
    • Hassan A.H., Prochasson P., Neely K.E., Galasinski S.C., Chandy M., Carrozza M.J., and Workman J.L. Function and selectivity of bromodomains in anchoring chromatin-modifying complexes to promoter nucleosomes. Cell 111 (2002) 369-379
    • (2002) Cell , vol.111 , pp. 369-379
    • Hassan, A.H.1    Prochasson, P.2    Neely, K.E.3    Galasinski, S.C.4    Chandy, M.5    Carrozza, M.J.6    Workman, J.L.7
  • 26
    • 0034717183 scopus 로고    scopus 로고
    • Structure and function of a human TAF(II)250 double bromodomain module
    • Jacobson R.H., Ladurner A.G., King D.S., and Tjian R. Structure and function of a human TAF(II)250 double bromodomain module. Science 288 (2000) 1422-1425
    • (2000) Science , vol.288 , pp. 1422-1425
    • Jacobson, R.H.1    Ladurner, A.G.2    King, D.S.3    Tjian, R.4
  • 30
    • 0025809264 scopus 로고
    • RAP1 protein activates and silences transcription of mating-type genes in yeast
    • Kurtz S., and Shore D. RAP1 protein activates and silences transcription of mating-type genes in yeast. Genes Dev. 5 (1991) 616-628
    • (1991) Genes Dev. , vol.5 , pp. 616-628
    • Kurtz, S.1    Shore, D.2
  • 31
    • 0035282573 scopus 로고    scopus 로고
    • Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins
    • Lachner M., O'Carroll D., Rea S., Mechtler K., and Jenuwein T. Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins. Nature 410 (2001) 116-120
    • (2001) Nature , vol.410 , pp. 116-120
    • Lachner, M.1    O'Carroll, D.2    Rea, S.3    Mechtler, K.4    Jenuwein, T.5
  • 32
    • 0028341308 scopus 로고
    • Nucleosome binding by the constitutive transcription factor Sp1
    • Li B., Adams C.C., and Workman J.L. Nucleosome binding by the constitutive transcription factor Sp1. J. Biol. Chem. 269 (1994) 7756-7763
    • (1994) J. Biol. Chem. , vol.269 , pp. 7756-7763
    • Li, B.1    Adams, C.C.2    Workman, J.L.3
  • 33
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb J.D., Liu X., Botstein D., and Brown P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28 (2001) 327-334
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 34
    • 0037291695 scopus 로고    scopus 로고
    • Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation
    • Matangkasombut O., and Buratowski S. Different sensitivities of bromodomain factors 1 and 2 to histone H4 acetylation. Mol. Cell 11 (2003) 353-363
    • (2003) Mol. Cell , vol.11 , pp. 353-363
    • Matangkasombut, O.1    Buratowski, S.2
  • 38
    • 0036479124 scopus 로고    scopus 로고
    • *T) elements are responsible for the highly specific chromatin organization at the ILV1 promoter
    • *T) elements are responsible for the highly specific chromatin organization at the ILV1 promoter. J. Biol. Chem. 277 (2002) 3202-3209
    • (2002) J. Biol. Chem. , vol.277 , pp. 3202-3209
    • Moreira, J.M.1    Horz, W.2    Holmberg, S.3
  • 40
    • 0035947299 scopus 로고    scopus 로고
    • Chromatin docking and exchange activity enhancement of RCC1 by histones H2A and H2B
    • Nemergut M.E., Mizzen C.A., Stukenberg T., Allis C.D., and Macara I.G. Chromatin docking and exchange activity enhancement of RCC1 by histones H2A and H2B. Science 292 (2001) 1540-1543
    • (2001) Science , vol.292 , pp. 1540-1543
    • Nemergut, M.E.1    Mizzen, C.A.2    Stukenberg, T.3    Allis, C.D.4    Macara, I.G.5
  • 41
    • 0028791330 scopus 로고
    • Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation
    • Polach K.J., and Widom J. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. J. Mol. Biol. 254 (1995) 130-149
    • (1995) J. Mol. Biol. , vol.254 , pp. 130-149
    • Polach, K.J.1    Widom, J.2
  • 42
    • 27644470214 scopus 로고    scopus 로고
    • The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF
    • Prochasson P., Florens L., Swanson S.K., Washburn M.P., and Workman J.L. The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. Genes Dev. 19 (2005) 2534-2539
    • (2005) Genes Dev. , vol.19 , pp. 2534-2539
    • Prochasson, P.1    Florens, L.2    Swanson, S.K.3    Washburn, M.P.4    Workman, J.L.5
  • 44
    • 0031658081 scopus 로고    scopus 로고
    • The chromatin structure of the GAL1 promoter forms independently of Reb1p in Saccharomyces cerevisiae
    • Reagan M.S., and Majors J.E. The chromatin structure of the GAL1 promoter forms independently of Reb1p in Saccharomyces cerevisiae. Mol. Gen. Genet. 259 (1998) 142-149
    • (1998) Mol. Gen. Genet. , vol.259 , pp. 142-149
    • Reagan, M.S.1    Majors, J.E.2
  • 45
    • 0035830960 scopus 로고    scopus 로고
    • Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites
    • Rossetti L., Cacchione S., De Menna A., Chapman L., Rhodes D., and Savino M. Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites. J. Mol. Biol. 306 (2001) 903-913
    • (2001) J. Mol. Biol. , vol.306 , pp. 903-913
    • Rossetti, L.1    Cacchione, S.2    De Menna, A.3    Chapman, L.4    Rhodes, D.5    Savino, M.6
  • 46
    • 34547277498 scopus 로고    scopus 로고
    • Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
    • Rufiange A., Jacques P.E., Bhat W., Robert F., and Nourani A. Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol. Cell 27 (2007) 393-405
    • (2007) Mol. Cell , vol.27 , pp. 393-405
    • Rufiange, A.1    Jacques, P.E.2    Bhat, W.3    Robert, F.4    Nourani, A.5
  • 47
    • 36448949026 scopus 로고    scopus 로고
    • Multivalent engagement of chromatin modifications by linked binding modules
    • Ruthenburg A.J., Li H., Patel D.J., and Allis C.D. Multivalent engagement of chromatin modifications by linked binding modules. Nat. Rev. Mol. Cell Biol. 8 (2007) 983-994
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 983-994
    • Ruthenburg, A.J.1    Li, H.2    Patel, D.J.3    Allis, C.D.4
  • 48
    • 0037102562 scopus 로고    scopus 로고
    • Chromatin remodeling by RSC involves ATP-dependent DNA translocation
    • Saha A., Wittmeyer J., and Cairns B.R. Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev. 16 (2002) 2120-2134
    • (2002) Genes Dev. , vol.16 , pp. 2120-2134
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 49
    • 0036269973 scopus 로고    scopus 로고
    • Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry
    • Sanders S.L., Jennings J., Canutescu A., Link A.J., and Weil P.A. Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol. Cell. Biol. 22 (2002) 4723-4738
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 4723-4738
    • Sanders, S.L.1    Jennings, J.2    Canutescu, A.3    Link, A.J.4    Weil, P.A.5
  • 51
    • 0028130685 scopus 로고
    • RAP1: a protean regulator in yeast
    • Shore D. RAP1: a protean regulator in yeast. Trends Genet. 10 (1994) 408-412
    • (1994) Trends Genet. , vol.10 , pp. 408-412
    • Shore, D.1
  • 53
    • 60349122111 scopus 로고    scopus 로고
    • A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    • Venters B.J., and Pugh B.F. A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res. 19 (2009) 360-371
    • (2009) Genome Res. , vol.19 , pp. 360-371
    • Venters, B.J.1    Pugh, B.F.2
  • 54
    • 0032793066 scopus 로고    scopus 로고
    • Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae
    • Yu L., and Morse R.H. Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae. Mol. Cell. Biol. 19 (1999) 5279-5288
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5279-5288
    • Yu, L.1    Morse, R.H.2
  • 57
    • 68249142923 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo: evidence against a nucleosome code
    • Zhang Y., Moqtaderi Z., Rattner B., Euskirchen G., Snyder M., Kadonaga J., Liu X., and Struhl K. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo: evidence against a nucleosome code. Nat. Struct. Mol. Biol. 16 (2009) 847-852
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 847-852
    • Zhang, Y.1    Moqtaderi, Z.2    Rattner, B.3    Euskirchen, G.4    Snyder, M.5    Kadonaga, J.6    Liu, X.7    Struhl, K.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.