-
1
-
-
0022856787
-
An evolutionary perspective on synonymous codon usage in unicellular organisms
-
10.1007/BF02099948. 3104616
-
An evolutionary perspective on synonymous codon usage in unicellular organisms. PM Sharp W-H Li, J Mol Evol 1986 24 28 38 10.1007/BF02099948 3104616
-
(1986)
J Mol Evol
, vol.24
, pp. 28-38
-
-
Sharp, P.M.1
Li, W.-H.2
-
2
-
-
0023064998
-
Models of nearly neutral mutations with particular implications for non-random usage of synonymous codons
-
10.1007/BF02134132. 3110426
-
Models of nearly neutral mutations with particular implications for non-random usage of synonymous codons. W-H Li, J Mol Evol 1987 24 337 345 10.1007/BF02134132 3110426
-
(1987)
J Mol Evol
, vol.24
, pp. 337-345
-
-
Li, W.-H.1
-
3
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
1752426
-
The selection-mutation-drift theory of synonymous codon usage. M Bulmer, Genetics 1991 129 897 907 1752426
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
4
-
-
0031738130
-
Translational selection and molecular evolution
-
10.1016/S0959-437X(98)80038-5. 9914211
-
Translational selection and molecular evolution. H Akashi A Eyre-Walker, Curr Opin Genet Dev 1998 8 688 693 10.1016/S0959-437X(98)80038-5 9914211
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 688-693
-
-
Akashi, H.1
Eyre-Walker, A.2
-
5
-
-
0015787150
-
Analysis of tRNAs during the development of Drosophila
-
10.1016/0012-1606(73)90173-5. 4207975
-
Analysis of tRNAs during the development of Drosophila. BN White GM Tener J Holden DT Suzuki, Dev Biol 1973 33 185 195 10.1016/0012-1606(73)90173-5 4207975
-
(1973)
Dev Biol
, vol.33
, pp. 185-195
-
-
White, B.N.1
Tener, G.M.2
Holden, J.3
Suzuki, D.T.4
-
6
-
-
0020024572
-
Codon selection in yeast
-
7037777
-
Codon selection in yeast. JL Bennetzen BD Hall, J Biol Chem 1982 257 3026 3031 7037777
-
(1982)
J Biol Chem
, vol.257
, pp. 3026-3031
-
-
Bennetzen, J.L.1
Hall, B.D.2
-
7
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
3916708
-
Codon usage and tRNA content in unicellular and multicellular organisms. T Ikemura, Mol Biol Evol 1985 2 13 34 3916708
-
(1985)
Mol Biol Evol
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
8
-
-
0024116811
-
"silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
-
3146682
-
"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. DC Shields PM Sharp DG Higgins F Wright, Mol Biol Evol 1988 5 704 716 3146682
-
(1988)
Mol Biol Evol
, vol.5
, pp. 704-716
-
-
Shields, D.C.1
Sharp, P.M.2
Higgins, D.G.3
Wright, F.4
-
9
-
-
0030731696
-
Codon usage bias and tRNA abundance in Drosophila
-
10.1007/PL00006256. 9342399
-
Codon usage bias and tRNA abundance in Drosophila. EN Moriyama JR Powell, J Mol Evol 1997 45 514 523 10.1007/PL00006256 9342399
-
(1997)
J Mol Evol
, vol.45
, pp. 514-523
-
-
Moriyama, E.N.1
Powell, J.R.2
-
10
-
-
0028220048
-
Synonymous codon usage in Drosophila melanogaster; Natural selection and translational accuracy
-
8005445
-
Synonymous codon usage in Drosophila melanogaster; natural selection and translational accuracy. H Akashi, Genetics 1994 136 927 935 8005445
-
(1994)
Genetics
, vol.136
, pp. 927-935
-
-
Akashi, H.1
-
11
-
-
0024405193
-
Codon usage determines translation rate in Escherichia coli
-
DOI 10.1016/0022-2836(89)90260-X
-
Codon usage determines translation rate in Escherichia coli. MA Sorensen CG Kurland S Pedersen, J Mol Bio l 1989 207 365 377 10.1016/0022-2836(89)90260-X (Pubitemid 19155241)
-
(1989)
Journal of Molecular Biology
, vol.207
, Issue.2
, pp. 365-377
-
-
Sorensen, M.A.1
Kurland, C.G.2
Pedersen, S.3
-
12
-
-
0024962419
-
Rates of aminoacyl-tRNA selection at 29 sense codons in vivo
-
10.1016/0022-2836(89)90170-8. 2478714
-
Rates of aminoacyl-tRNA selection at 29 sense codons in vivo. JF Curran M Yarus, J Mol Biol 1989 209 65 77 10.1016/0022-2836(89)90170-8 2478714
-
(1989)
J Mol Biol
, vol.209
, pp. 65-77
-
-
Curran, J.F.1
Yarus, M.2
-
13
-
-
0026409389
-
Absolute in vivo translation rates of individual codons in Escherichia coli. the two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
-
10.1016/0022-2836(91)90211-N. 1960727
-
Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. MA Sorensen S Pedersen, J Mol Biol 1991 222 265 280 10.1016/0022-2836(91)90211-N 1960727
-
(1991)
J Mol Biol
, vol.222
, pp. 265-280
-
-
Sorensen, M.A.1
Pedersen, S.2
-
14
-
-
0031586223
-
Growth rate-optimised tRNA abundance and codon usage
-
10.1006/jmbi.1997.1142. 9245585
-
Growth rate-optimised tRNA abundance and codon usage. OG Berg CG Kurland, J Mol Biol 1997 270 544 550 10.1006/jmbi.1997.1142 9245585
-
(1997)
J Mol Biol
, vol.270
, pp. 544-550
-
-
Berg, O.G.1
Kurland, C.G.2
-
15
-
-
0027020232
-
The nearly neutral theory of molecular evolution
-
10.1146/annurev.es.23.110192.001403
-
The nearly neutral theory of molecular evolution. T Ohta, Annu Rev Ecol Syst 1992 23 263 286 10.1146/annurev.es.23.110192.001403
-
(1992)
Annu Rev Ecol Syst
, vol.23
, pp. 263-286
-
-
Ohta, T.1
-
16
-
-
0028797897
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA
-
7713409
-
Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA. H Akashi, Genetics 1995 139 1067 1076 7713409
-
(1995)
Genetics
, vol.139
, pp. 1067-1076
-
-
Akashi, H.1
-
17
-
-
0029985179
-
Molecular evolution between Drosophila melanogaster and D. simulans: Reduced codon bias, faster rates of amino aid substitution, and larger proteins in D. melanogaster
-
8913769
-
Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino aid substitution, and larger proteins in D. melanogaster. H Akashi, Genetics 1996 144 1297 1307 8913769
-
(1996)
Genetics
, vol.144
, pp. 1297-1307
-
-
Akashi, H.1
-
19
-
-
1842635464
-
Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression
-
10.1007/BF02254432. 15067211
-
Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression. Z-M Zheng, J Biomed Sci 2004 11 278 294 10.1007/BF02254432 15067211
-
(2004)
J Biomed Sci
, vol.11
, pp. 278-294
-
-
Zheng, Z.-M.1
-
20
-
-
37549008368
-
Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster
-
10.1093/molbev/msm210. 17905999
-
Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster. T Warnecke LD Hurst, Mol Biol Evol 2007 24 2755 2762 10.1093/molbev/msm210 17905999
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2755-2762
-
-
Warnecke, T.1
Hurst, L.D.2
-
21
-
-
0034625260
-
Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity
-
10.1016/S0092-8674(00)80878-8. 10892653
-
Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity. D Schmucker JC Clemens H Shu CA Worby J Xiao M Muda JE Dixon L Zipursky, Cell 2000 101 671 684 10.1016/S0092-8674(00)80878-8 10892653
-
(2000)
Cell
, vol.101
, pp. 671-684
-
-
Schmucker, D.1
Clemens, J.C.2
Shu, H.3
Worby, C.A.4
Xiao, J.5
Muda, M.6
Dixon, J.E.7
Zipursky, L.8
-
22
-
-
58849147630
-
Dscam and DSCAM: Complex genes in simple animals, complex animals yet simple genes
-
10.1101/gad.1752909. 19171779
-
Dscam and DSCAM: complex genes in simple animals, complex animals yet simple genes. D Schmucker B Chen, Genes Dev 2009 23 147 156 10.1101/gad.1752909 19171779
-
(2009)
Genes Dev
, vol.23
, pp. 147-156
-
-
Schmucker, D.1
Chen, B.2
-
23
-
-
24944454976
-
Extensive diversity of Ig-superfamily proteins in the immune system of insects
-
10.1126/science.1116887. 16109846
-
Extensive diversity of Ig-superfamily proteins in the immune system of insects. FL Watson R Puttmann-Holgado F Thomas DL Lamar M Hughes M Kondo VI Rebel D Schmucker, Science 2005 309 1874 1878 10.1126/science.1116887 16109846
-
(2005)
Science
, vol.309
, pp. 1874-1878
-
-
Watson, F.L.1
Puttmann-Holgado, R.2
Thomas, F.3
Lamar, D.L.4
Hughes, M.5
Kondo, M.6
Rebel, V.I.7
Schmucker, D.8
-
24
-
-
0028040734
-
The effects of mutation and natural selection on codon bias in the genes of Drosophila
-
7982559
-
The effects of mutation and natural selection on codon bias in the genes of Drosophila. RM Kliman J Hey, Genetics 1994 137 1049 1056 7982559
-
(1994)
Genetics
, vol.137
, pp. 1049-1056
-
-
Kliman, R.M.1
Hey, J.2
-
25
-
-
7344242178
-
Mutation pressure, natural selection, and the evolution of base composition in Drosophila
-
10.1023/A:1017078607465
-
Mutation pressure, natural selection, and the evolution of base composition in Drosophila. H Akashi RM Kliman A Eyre-Walker, Genetica 1998 102/103 49 60 10.1023/A:1017078607465
-
(1998)
Genetica
, vol.102-103
, pp. 49-60
-
-
Akashi, H.1
Kliman, R.M.2
Eyre-Walker, A.3
-
26
-
-
33645093705
-
Variation in synonymous codon use and DNA polymorphism within the Drosophila genome
-
10.1111/j.1420-9101.2005.00996.x. 16405571
-
Variation in synonymous codon use and DNA polymorphism within the Drosophila genome. N Bierne A Eyre-Walker, J Evol Biol 2006 19 1 11 10.1111/j.1420-9101.2005.00996.x 16405571
-
(2006)
J Evol Biol
, vol.19
, pp. 1-11
-
-
Bierne, N.1
Eyre-Walker, A.2
-
27
-
-
0027383354
-
Reduced natural selection assocciated with low recombination in Drosophila melanogaster
-
8277853
-
Reduced natural selection assocciated with low recombination in Drosophila melanogaster. RM Kliman J Hey, Mol Biol Evol 1993 10 1239 1258 8277853
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1239-1258
-
-
Kliman, R.M.1
Hey, J.2
-
28
-
-
0032894285
-
Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila
-
9872963
-
Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila. JM Comeron M Kreitman M Aguade, Genetics 1999 151 239 249 9872963
-
(1999)
Genetics
, vol.151
, pp. 239-249
-
-
Comeron, J.M.1
Kreitman, M.2
Aguade, M.3
-
29
-
-
0035826858
-
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes
-
10.1073/pnas.091427698. 11320215
-
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. G Marais D Mouchiroud L Duret, Proc Nat Acad Sci 2001 98 5688 5692 10.1073/pnas.091427698 11320215
-
(2001)
Proc Nat Acad Sci
, vol.98
, pp. 5688-5692
-
-
Marais, G.1
Mouchiroud, D.2
Duret, L.3
-
30
-
-
0037648944
-
Neutral effect of recombination on base composition in Drosophila
-
10.1017/S0016672302006079. 12872909
-
Neutral effect of recombination on base composition in Drosophila. G Marais D Mouchiroud L Duret, Genet Res 2003 81 79 87 10.1017/S0016672302006079 12872909
-
(2003)
Genet Res
, vol.81
, pp. 79-87
-
-
Marais, G.1
Mouchiroud, D.2
Duret, L.3
-
31
-
-
0036188913
-
Interactions between natural selection, recombination and gene density in the genes of Drosophila
-
11861564
-
Interactions between natural selection, recombination and gene density in the genes of Drosophila. J Hey RM Kliman, Genetics 2002 160 595 608 11861564
-
(2002)
Genetics
, vol.160
, pp. 595-608
-
-
Hey, J.1
Kliman, R.M.2
-
32
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
10.1073/pnas.96.8.4482. 10200288
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. L Duret D Mouchiroud, Proc Natl Acad Sci USA 1999 96 4482 4487 10.1073/pnas.96.8.4482 10200288
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
33
-
-
4644353346
-
The organization and evolution of the dipteran and hymenopteran Down syndrome cell adhesion molecule (Dscam) genes
-
10.1261/rna.7105504. 15383675
-
The organization and evolution of the dipteran and hymenopteran Down syndrome cell adhesion molecule (Dscam) genes. BR Graveley A Kaur D Gunning SL Zipursky L Rowen JC Clemens, RNA 2004 10 1499 1506 10.1261/rna.7105504 15383675
-
(2004)
RNA
, vol.10
, pp. 1499-1506
-
-
Graveley, B.R.1
Kaur, A.2
Gunning, D.3
Zipursky, S.L.4
Rowen, L.5
Clemens, J.C.6
-
34
-
-
1242352089
-
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks
-
10.1093/molbev/msg236. 12949132
-
Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. K Tamura S Subramanian S Kumar, Molecular Biology and Evolution 2004 21 36 44 10.1093/molbev/msg236 12949132
-
(2004)
Molecular Biology and Evolution
, vol.21
, pp. 36-44
-
-
Tamura, K.1
Subramanian, S.2
Kumar, S.3
-
35
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
DOI 10.1038/nature06340, PII NATURE06340
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. A Stark MF Lin P Kheradpour JS Pedersen L Parts JW Carlson MA Crosby MD Rasmussen S Roy AN Deoras JG Ruby J Brennecke Harvard FlyBase curatorst, Berkeley Drosophila Genome Project E Hodges AS Hinrichs A Caspi B Paten S-W Park MV Han ML Maeder BJ Polansky BE Robson S Aerts J van Helden B Hassan DG Gilbert DA Eastman M Rice M Weir MW Hahn Y Park CN Dewey L Pachter WJ Kent D Haussler EC Lai DP Bartel GJ Hannon TC Kaufman MB Eisen AG Clark D Smith SE Celniker WM Gelbart M Kellis, Nature 2007 450 219 232 10.1038/nature06340 17994088 (Pubitemid 350100553)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 219-232
-
-
Stark, A.1
Lin, M.F.2
Kheradpour, P.3
Pedersen, J.S.4
Parts, L.5
Carlson, J.W.6
Crosby, M.A.7
Rasmussen, M.D.8
Roy, S.9
Deoras, A.N.10
Ruby, J.G.11
Brennecke, J.12
Hodges, E.13
Hinrichs, A.S.14
Caspi, A.15
Paten, B.16
Park, S.-W.17
Han, M.V.18
Maeder, M.L.19
Polansky, B.J.20
Robson, B.E.21
Aerts, S.22
Van Helden, J.23
Hassan, B.24
Gilbert, D.G.25
Eastman, D.A.26
Rice, M.27
Weir, M.28
Hahn, M.W.29
Park, Y.30
Dewey, C.N.31
Pachter, L.32
Kent, W.J.33
Haussler, D.34
Lai, E.C.35
Bartel, D.P.36
Hannon, G.J.37
Kaufman, T.C.38
Eisen, M.B.39
Clark, A.G.40
Smith, D.41
Celniker, S.E.42
Gelbart, W.M.43
Kellis, M.44
Matthews, B.B.45
Schroeder, A.J.46
Gramates, L.S.47
St Pierre, S.E.48
Roark, M.49
Wiley Jr., K.L.50
Kulathinal, R.J.51
Zhang, P.52
Myrick, K.V.53
Antone, J.V.54
Yu, C.55
Park, S.56
Wan, K.H.57
more..
-
36
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium, 10.1038/nature06341. 17994087
-
Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, Nature 2007 450 203 218 10.1038/nature06341 17994087
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
-
37
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
10.1146/annurev.biochem.72.121801.161720. 12626338
-
Mechanisms of alternative pre-messenger RNA splicing. DL Black, Annu Rev Biochem 2003 72 291 336 10.1146/annurev.biochem.72.121801.161720 12626338
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
38
-
-
18344364099
-
Understanding alternative splicing: Towards a cellular code
-
15956978
-
Understanding alternative splicing: towards a cellular code. AJ Matlin F Clark CWJ Smith, Molecular Cell Biology 2005 6 386 398 15956978
-
(2005)
Molecular Cell Biology
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.J.3
-
39
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
10.1016/j.cell.2006.06.023. 16839875
-
Alternative splicing: new insights from global analyses. BJ Blencowe, Cell 2006 126 37 47 10.1016/j.cell.2006.06.023 16839875
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
40
-
-
36849015934
-
A regulator of Dscam mutually exclusive splicing fidelity
-
DOI 10.1038/nsmb1339, PII NSMB1339
-
A regulator of Dscam mutually exclusive splicing fidelity. S Olson M Blanchette J Park Y Savva GW Yeo JM Yeakley DC Rio BR Graveley, Nat Struct Mol Biol 2007 14 1134 1140 10.1038/nsmb1339 (Pubitemid 350223337)
-
(2007)
Nature Structural and Molecular Biology
, vol.14
, Issue.12
, pp. 1134-1140
-
-
Olson, S.1
Blanchette, M.2
Park, J.3
Savva, Y.4
Yeo, G.W.5
Yeakley, J.M.6
Rio, D.C.7
Graveley, B.R.8
-
41
-
-
26244435561
-
Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures
-
10.1016/j.cell.2005.07.028. 16213213
-
Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures. BR Graveley, Cell 2005 123 65 73 10.1016/j.cell.2005.07.028 16213213
-
(2005)
Cell
, vol.123
, pp. 65-73
-
-
Graveley, B.R.1
-
42
-
-
0034736528
-
A test of translational selection at 'silent' sites in the human genome: Base composition comparisons in alternatively spliced genes
-
10.1016/S0378-1119(00)00482-0. 11164041
-
A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes. K Iida H Akashi, Gene 2000 261 93 105 10.1016/S0378-1119(00)00482-0 11164041
-
(2000)
Gene
, vol.261
, pp. 93-105
-
-
Iida, K.1
Akashi, H.2
-
43
-
-
1442311559
-
Stochastic yet biased expression of multiple Dscam splice variants by individual cells
-
10.1038/ng1299. 14758360
-
Stochastic yet biased expression of multiple Dscam splice variants by individual cells. G Neves J Zucker M Daly A Chess, Nat Genet 2004 36 240 246 10.1038/ng1299 14758360
-
(2004)
Nat Genet
, vol.36
, pp. 240-246
-
-
Neves, G.1
Zucker, J.2
Daly, M.3
Chess, A.4
-
44
-
-
8144225362
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
-
10.1073/pnas.0404901101. 15505203
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes. G Yeo S Hoon B Venkatesh CB Burge, Proc Natl Acad Sci USA 2004 101 15700 15705 10.1073/pnas.0404901101 15505203
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15700-15705
-
-
Yeo, G.1
Hoon, S.2
Venkatesh, B.3
Burge, C.B.4
-
45
-
-
0028895417
-
Exon recognition in vertebrate splicing
-
7852296
-
Exon recognition in vertebrate splicing. SM Berget, J Biol Chem 1995 270 2411 2414 7852296
-
(1995)
J Biol Chem
, vol.270
, pp. 2411-2414
-
-
Berget, S.M.1
-
46
-
-
0023274170
-
The rate of synonymous substitution in Enterobacterial genes is inversely related to codon usage bias
-
3328816
-
The rate of synonymous substitution in Enterobacterial genes is inversely related to codon usage bias. PM Sharp W-H Li, Mol Biol Evol 1987 4 222 230 3328816
-
(1987)
Mol Biol Evol
, vol.4
, pp. 222-230
-
-
Sharp, P.M.1
Li, W.-H.2
-
47
-
-
0037047644
-
Predictive identification of exonic splicing enhancers in human genes
-
10.1126/science.1073774. 12114529
-
Predictive identification of exonic splicing enhancers in human genes. WG Fairbrother R-F Yeh PA Sharp CB Burge, Science 2002 297 1007 1013 10.1126/science.1073774 12114529
-
(2002)
Science
, vol.297
, pp. 1007-1013
-
-
Fairbrother, W.G.1
Yeh, R.-F.2
Sharp, P.A.3
Burge, C.B.4
-
48
-
-
34249987613
-
A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana
-
10.1186/1471-2105-8-159. 17517127
-
A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana. M Pertea SM Mount SL Salzberg, BMC Bioinformatics 2007 8 159 10.1186/1471-2105-8-159 17517127
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 159
-
-
Pertea, M.1
Mount, S.M.2
Salzberg, S.L.3
-
49
-
-
33751361304
-
Inference of splicing regulatory activities by sequence neighborhood analysis
-
10.1371/journal.pgen.0020191. 17121466
-
Inference of splicing regulatory activities by sequence neighborhood analysis. MB Stadler N Shomron GW Yeo A Schneider X Xiao CB Burge, PloS Genet 2006 2 191 10.1371/journal.pgen.0020191 17121466
-
(2006)
PloS Genet
, vol.2
, pp. 5191
-
-
Stadler, M.B.1
Shomron, N.2
Yeo, G.W.3
Schneider, A.4
Xiao, X.5
Burge, C.B.6
-
50
-
-
30744469841
-
Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers
-
10.1093/molbev/msj035. 16221894
-
Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers. JL Parmley JV Chamary LD Hurst, Mol Biol Evol 2006 23 301 309 10.1093/molbev/msj035 16221894
-
(2006)
Mol Biol Evol
, vol.23
, pp. 301-309
-
-
Parmley, J.L.1
Chamary, J.V.2
Hurst, L.D.3
-
51
-
-
0032869219
-
Within-and between-species DNA sequence variation and the 'footprint' of natural selection
-
10.1016/S0378-1119(99)00294-2. 10570982
-
Within-and between-species DNA sequence variation and the 'footprint' of natural selection. H Akashi, Gene 1999 238 39 51 10.1016/S0378-1119(99)00294-2 10570982
-
(1999)
Gene
, vol.238
, pp. 39-51
-
-
Akashi, H.1
-
52
-
-
37249045872
-
Variable strength of translational selection among 12 Drosophila species
-
10.1534/genetics.107.070466. 18039870
-
Variable strength of translational selection among 12 Drosophila species. A Heger CP Ponting, Genetics 2007 177 1337 1348 10.1534/genetics.107.070466 18039870
-
(2007)
Genetics
, vol.177
, pp. 1337-1348
-
-
Heger, A.1
Ponting, C.P.2
-
53
-
-
38649096895
-
Codon usage in twelve species of Drosophila
-
DOI 10.1186/1471-2148-7-226
-
Codon usage in twelve species of Drosophila. S Vicario EN Moriyama JR Powell, BMC Evo/Biol 2007 7 226 10.1186/1471-2148-7-226 (Pubitemid 351169906)
-
(2007)
BMC Evolutionary Biology
, vol.7
, Issue.1
, pp. 226
-
-
Vicario, S.1
Moriyama, E.N.2
Powell, J.R.3
-
54
-
-
0036906987
-
Retroposed new genes out of the X in Drosophila
-
10.1101/gr.6049. 12466289
-
Retroposed new genes out of the X in Drosophila. E Betran K Thornton M Long, Genome Res 2002 12 1854 1859 10.1101/gr.6049 12466289
-
(2002)
Genome Res
, vol.12
, pp. 1854-1859
-
-
Betran, E.1
Thornton, K.2
Long, M.3
-
56
-
-
0030903283
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila
-
9136019
-
Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila. H Akashi SW Schaeffer, Genetics 1997 146 295 307 9136019
-
(1997)
Genetics
, vol.146
, pp. 295-307
-
-
Akashi, H.1
Schaeffer, S.W.2
-
57
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
10.1093/bib/5.2.150. 15260895
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. S Kumar K Tamura M Nei, Briefings in Bioinformatics 2004 5 150 163 10.1093/bib/5.2.150 15260895
-
(2004)
Briefings in Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
|