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Volumn 9, Issue 1, 2009, Pages

Evolutionary rate patterns of the gibberellin pathway genes

Author keywords

[No Author keywords available]

Indexed keywords

GIBBERELLIN; PROTEIN; PLANT DNA;

EID: 69949149117     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-206     Document Type: Article
Times cited : (47)

References (45)
  • 1
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Mass
    • Molecular evolution. WH Li, Sinauer Associates, Sunderland, Mass 1997
    • (1997) Molecular Evolution
    • Li, W.H.1
  • 2
    • 0036100820 scopus 로고    scopus 로고
    • Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis
    • DOI 10.1007/s0023901-0074-1
    • Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis. P Tiffin MW Hahn, J Mol Evol 2002 54 6 746 753 10.1007/s0023901-0074-1 12029356 (Pubitemid 34553640)
    • (2002) Journal of Molecular Evolution , vol.54 , Issue.6 , pp. 746-753
    • Tiffin, P.1    Hahn, M.W.2
  • 3
    • 33646375934 scopus 로고    scopus 로고
    • The causes of protein evolutionary rate variation
    • DOI 10.1016/j.tree.2006.03.008, PII S0169534706000954
    • The causes of protein evolutionary rate variation. JO McInerney, Trends Ecol Evol 2006 21 5 230 232 10.1016/j.tree.2006.03.008 16697908 (Pubitemid 43669035)
    • (2006) Trends in Ecology and Evolution , vol.21 , Issue.5 , pp. 230-232
    • McInerney, J.O.1
  • 4
    • 34548357121 scopus 로고    scopus 로고
    • Assessing the determinants of evolutionary rates in the presence of noise
    • DOI 10.1093/molbev/msm044
    • Assessing the determinants of evolutionary rates in the presence of noise. JB Plotkin HB Fraser, Mol Biol Evol 2007 24 5 1113 1121 10.1093/molbev/msm044 17347158 (Pubitemid 47343649)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.5 , pp. 1113-1121
    • Plotkin, J.B.1    Fraser, H.B.2
  • 5
    • 33646182934 scopus 로고    scopus 로고
    • An integrated view of protein evolution
    • 10.1038/nrg1838 16619049
    • An integrated view of protein evolution. C Pal B Papp MJ Lercher, Nat Rev Genet 2006 7 5 337 348 10.1038/nrg1838 16619049
    • (2006) Nat Rev Genet , vol.7 , Issue.5 , pp. 337-348
    • Pal, C.1    Papp, B.2    Lercher, M.J.3
  • 6
    • 33746237576 scopus 로고    scopus 로고
    • The quest for the universals of protein evolution
    • DOI 10.1016/j.tig.2006.06.004, PII S0168952506001727
    • The quest for the universals of protein evolution. EP Rocha, Trends Genet 2006 22 8 412 416 10.1016/j.tig.2006.06.004 16808987 (Pubitemid 44093768)
    • (2006) Trends in Genetics , vol.22 , Issue.8 , pp. 412-416
    • Rocha, E.P.C.1
  • 7
    • 30744441602 scopus 로고    scopus 로고
    • A single determinant dominates the rate of yeast protein evolution
    • DOI 10.1093/molbev/msj038
    • A single determinant dominates the rate of yeast protein evolution. DA Drummond A Raval CO Wilke, Mol Biol Evol 2006 23 2 327 337 10.1093/molbev/msj038 16237209 (Pubitemid 43100047)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.2 , pp. 327-337
    • Drummond, D.A.1    Raval, A.2    Wilke, C.O.3
  • 8
    • 33745107471 scopus 로고    scopus 로고
    • Influence of metabolic network structure and function on enzyme evolution
    • DOI 10.1186/gb-2006-7-5-r39
    • Influence of metabolic network structure and function on enzyme evolution. D Vitkup P Kharchenko A Wagner, Genome Biol 2006 7 5 R39 10.1186/gb-2006-7-5-r39 16684370 (Pubitemid 43885065)
    • (2006) Genome Biology , vol.7 , Issue.5
    • Vitkup, D.1    Kharchenko, P.2    Wagner, A.3
  • 9
    • 0038075568 scopus 로고    scopus 로고
    • Contrasting selection pressures on components of the Ras-mediated signal transduction pathway in Drosophila
    • DOI 10.1046/j.1365-294X.2003.01741.x
    • Contrasting selection pressures on components of the Ras-mediated signal transduction pathway in Drosophila. RM Riley W Jin G Gibson, Mol Ecol 2003 12 5 1315 1323 10.1046/j.1365-294X.2003.01741.x 12694293 (Pubitemid 36573131)
    • (2003) Molecular Ecology , vol.12 , Issue.5 , pp. 1315-1323
    • Riley, R.M.1    Jin, W.2    Gibson, G.3
  • 10
    • 0036791005 scopus 로고    scopus 로고
    • Genetic diversity and selection in the maize starch pathway
    • 10.1073/pnas.202476999 12244216
    • Genetic diversity and selection in the maize starch pathway. SR Whitt LM Wilson MI Tenaillon BS Gaut ESt Buckler, Proc Natl Acad Sci USA 2002 99 20 12959 12962 10.1073/pnas.202476999 12244216
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.20 , pp. 12959-12962
    • Whitt, S.R.1    Wilson, L.M.2    Tenaillon, M.I.3    Gaut, B.S.4    Est, B.5
  • 11
    • 0032999582 scopus 로고    scopus 로고
    • Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway
    • 10028292
    • Patterns of evolutionary rate variation among genes of the anthocyanin biosynthetic pathway. MD Rausher RE Miller P Tiffin, Mol Biol Evol 1999 16 2 266 274 10028292
    • (1999) Mol Biol Evol , vol.16 , Issue.2 , pp. 266-274
    • Rausher, M.D.1    Miller, R.E.2    Tiffin, P.3
  • 12
    • 0036240921 scopus 로고    scopus 로고
    • Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway
    • 11973317
    • Contrasting evolutionary forces in the Arabidopsis thaliana floral developmental pathway. KM Olsen A Womack AR Garrett JI Suddith MD Purugganan, Genetics 2002 160 4 1641 1650 11973317
    • (2002) Genetics , vol.160 , Issue.4 , pp. 1641-1650
    • Olsen, K.M.1    Womack, A.2    Garrett, A.R.3    Suddith, J.I.4    Purugganan, M.D.5
  • 13
    • 0242497865 scopus 로고    scopus 로고
    • Evolutionary Rate Variation in Anthocyanin Pathway Genes
    • DOI 10.1093/molbev/msg197
    • Evolutionary rate variation in anthocyanin pathway genes. Y Lu MD Rausher, Mol Biol Evol 2003 20 11 1844 1853 10.1093/molbev/msg197 12885963 (Pubitemid 37420937)
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.11 , pp. 1844-1853
    • Lu, Y.1    Rausher, M.D.2
  • 15
    • 50249179634 scopus 로고    scopus 로고
    • Variation in constraint versus positive selection as an explanation for evolutionary rate variation among anthocyanin genes
    • 10.1007/s00239-008-9105-5
    • Variation in constraint versus positive selection as an explanation for evolutionary rate variation among anthocyanin genes. M Rausher Y Lu K Meyer, J MolEvol 2008 67 2 137 144 10.1007/s00239-008-9105-5
    • (2008) J MolEvol , vol.67 , Issue.2 , pp. 137-144
    • Rausher, M.1    Lu, Y.2    Meyer, K.3
  • 16
    • 65349169643 scopus 로고    scopus 로고
    • The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis
    • 10.1093/molbev/msp021 19188263
    • The correlation of evolutionary rate with pathway position in plant terpenoid biosynthesis. H Ramsay LH Rieseberg K Ritland, Mol Biol Evol 2009 26 5 1045 1053 10.1093/molbev/msp021 19188263
    • (2009) Mol Biol Evol , vol.26 , Issue.5 , pp. 1045-1053
    • Ramsay, H.1    Rieseberg, L.H.2    Ritland, K.3
  • 17
    • 2542491030 scopus 로고    scopus 로고
    • The evolution of molecular genetic pathways and networks
    • DOI 10.1002/bies.20026
    • The evolution of molecular genetic pathways and networks. JM Cork MD Purugganan, Bioessays 2004 26 5 479 484 10.1002/bies.20026 15112228 (Pubitemid 38684963)
    • (2004) BioEssays , vol.26 , Issue.5 , pp. 479-484
    • Cork, J.M.1    Purugganan, M.D.2
  • 18
    • 0033369552 scopus 로고    scopus 로고
    • Analysis of selection on enzyme polymorphisms
    • DOI 10.1146/annurev.ecolsys.30.1.301
    • Analysis of selection on enzyme polymorphisms. WF Eanes, Annu Rev Ecol Syst 1999 30 1 301 326 10.1146/annurev.ecolsys.30.1.301 (Pubitemid 30065629)
    • (1999) Annual Review of Ecology and Systematics , vol.30 , pp. 301-326
    • Eanes, W.F.1
  • 19
    • 0029772552 scopus 로고    scopus 로고
    • Emergence of preferred structures in a simple model of protein folding
    • 10.1126/science.273.5275.666 8662562
    • Emergence of preferred structures in a simple model of protein folding. H Li R Helling C Tang N Wingreen, Science 1996 273 5275 666 669 10.1126/science.273.5275.666 8662562
    • (1996) Science , vol.273 , Issue.5275 , pp. 666-669
    • Li, H.1    Helling, R.2    Tang, C.3    Wingreen, N.4
  • 20
    • 33748143748 scopus 로고    scopus 로고
    • Structural determinants of the rate of protein evolution in yeast
    • DOI 10.1093/molbev/msl040
    • Structural determinants of the rate of protein evolution in yeast. JD Bloom DA Drummond FH Arnold CO Wilke, Mol Biol Evol 2006 23 9 1751 1761 10.1093/molbev/msl040 16782762 (Pubitemid 44309769)
    • (2006) Molecular Biology and Evolution , vol.23 , Issue.9 , pp. 1751-1761
    • Bloom, J.D.1    Drummond, D.A.2    Arnold, F.H.3    Wilke, C.O.4
  • 21
    • 47549097539 scopus 로고    scopus 로고
    • Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution
    • DOI 10.1016/j.cell.2008.05.042, PII S0092867408007058
    • Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution. DA Drummond CO Wilke, Cell 2008 134 2 341 352 10.1016/j.cell.2008.05.042 18662548 (Pubitemid 352010328)
    • (2008) Cell , vol.134 , Issue.2 , pp. 341-352
    • Drummond, D.A.1    Wilke, C.O.2
  • 22
    • 0842290925 scopus 로고    scopus 로고
    • Molecular Evolution in Large Genetic Networks: Does Connectivity Equal Constraint?
    • DOI 10.1007/s00239-003-2544-0
    • Molecular evolution in large genetic networks: Does connectivity equal constraint? M Hahn G Conant A Wagner, J Mol Evol 2004 58 2 203 211 10.1007/s00239-003-2544-0 15042341 (Pubitemid 38183972)
    • (2004) Journal of Molecular Evolution , vol.58 , Issue.2 , pp. 203-211
    • Hahn, M.W.1    Conant, G.C.2    Wagner, A.3
  • 24
    • 44949108257 scopus 로고    scopus 로고
    • Gibberellin metabolism and its regulation
    • DOI 10.1146/annurev.arplant.59.032607.092804
    • Gibberellin metabolism and its regulation. S Yamaguchi, Annu Rev Plant Biol 2008 59 1 225 251 10.1146/annurev.arplant.59.032607.092804 18173378 (Pubitemid 351813030)
    • (2008) Annual Review of Plant Biology , vol.59 , pp. 225-251
    • Yamaguchi, S.1
  • 26
    • 23944471581 scopus 로고    scopus 로고
    • Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes
    • 10.3732/ajb.92.9.1548
    • Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes. YL Guo S Ge, Am J Bot 2005 92 9 1548 1558 10.3732/ajb.92.9.1548
    • (2005) Am J Bot , vol.92 , Issue.9 , pp. 1548-1558
    • Guo, Y.L.1    Ge, S.2
  • 27
    • 0034800508 scopus 로고    scopus 로고
    • Phylogeny and subfamilial classification of the grasses (Poaceae)
    • 10.2307/3298585
    • Phylogeny and subfamilial classification of the grasses (Poaceae). GPWG, Ann Missouri Bot Gard 2001 88 3 373 457 10.2307/3298585
    • (2001) Ann Missouri Bot Gard , vol.88 , Issue.3 , pp. 373-457
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins, Nucl Acids Res 1997 25 24 4876 4882 10.1093/nar/25.24.4876 9396791 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 29
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Software package for data analysis in molecular biology and evolution
    • 10.1093/jhered/92.4.371 11535656
    • DAMBE: software package for data analysis in molecular biology and evolution. X Xia Z Xie, J Hered 2001 92 4 371 373 10.1093/jhered/92.4.371 11535656
    • (2001) J Hered , vol.92 , Issue.4 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 30
    • 0033979433 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
    • 10666704
    • Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. Z Yang R Nielsen, Mol Biol Evol 2000 17 1 32 43 10666704
    • (2000) Mol Biol Evol , vol.17 , Issue.1 , pp. 32-43
    • Yang, Z.1    Nielsen, R.2
  • 31
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • DOI 10.1093/molbev/msm088
    • PAML 4: phylogenetic analysis by maximum likelihood. Z Yang, Mol Biol Evol 2007 24 8 1586 1591 10.1093/molbev/msm088 17483113 (Pubitemid 47236688)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1586-1591
    • Yang, Z.1
  • 32
    • 0023046874 scopus 로고
    • Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
    • 10.1093/nar/14.13.5125 3526280
    • Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes. PM Sharp TM Tuohy KR Mosurski, Nucl Acids Res 1986 14 13 5125 5143 10.1093/nar/14.13.5125 3526280
    • (1986) Nucl Acids Res , vol.14 , Issue.13 , pp. 5125-5143
    • Sharp, P.M.1    Tuohy, T.M.2    Mosurski, K.R.3
  • 33
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution
    • 10.1007/BF02100192 1909371
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution. PM Sharp, J Mol Evol 1991 33 1 23 33 10.1007/BF02100192 1909371
    • (1991) J Mol Evol , vol.33 , Issue.1 , pp. 23-33
    • Sharp, P.M.1
  • 34
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • DOI 10.1093/bioinformatics/15.2.174
    • DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. J Rozas R Rozas, Bioinformatics 1999 15 2 174 175 10.1093/bioinformatics/15.2.174 10089204 (Pubitemid 29134733)
    • (1999) Bioinformatics , vol.15 , Issue.2 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 35
    • 0025318864 scopus 로고
    • The 'effective number of codons' used in a gene
    • DOI 10.1016/0378-1119(90)90491-9
    • The "effective number of codons" used in a gene. F Wright, Gene 1990 87 1 23 29 10.1016/0378-1119(90)90491-9 2110097 (Pubitemid 20139850)
    • (1990) Gene , vol.87 , Issue.1 , pp. 23-29
    • Wright, F.1
  • 36
    • 0001884644 scopus 로고
    • Individual comparisons by ranking methods
    • 10.2307/3001968
    • Individual comparisons by ranking methods. F Wilcoxin, Biometrics 1945 1 6 80 83 10.2307/3001968
    • (1945) Biometrics , vol.1 , Issue.6 , pp. 80-83
    • Wilcoxin, F.1
  • 37
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • 10.1016/S0169-5347(00)01994-7 11114436
    • Statistical methods for detecting molecular adaptation. Z Yang JP Bielawski, Trends Ecol Evol 2000 15 12 496 503 10.1016/S0169-5347(00)01994-7 11114436
    • (2000) Trends Ecol Evol , vol.15 , Issue.12 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 38
    • 0031960185 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    • DOI 10.1007/PL00006320
    • Synonymous and nonsynonymous rate variation in nuclear genes of mammals. Z Yang R Nielsen, J Mol Evol 1998 46 4 409 418 10.1007/PL00006320 9541535 (Pubitemid 28164945)
    • (1998) Journal of Molecular Evolution , vol.46 , Issue.4 , pp. 409-418
    • Yang, Z.1    Nielsen, R.2
  • 39
    • 0037270595 scopus 로고    scopus 로고
    • Maximum likelihood methods for detecting adaptive evolution after gene duplication
    • DOI 10.1023/A:1022642807731
    • Maximum likelihood methods for detecting adaptive evolution after gene duplication. JP Bielawski Z Yang, J Struct funct Genom 2003 3 1-4 201 212 10.1023/A:1022642807731 (Pubitemid 36469307)
    • (2003) Journal of Structural and Functional Genomics , vol.3 , Issue.1-4 , pp. 201-212
    • Bielawski, J.P.1    Yang, Z.2
  • 42
    • 0024497416 scopus 로고
    • Mutation rates differ among regions of the mammalian genome
    • DOI 10.1038/337283a0
    • Mutation rates differ among regions of the mammalian genome. KH Wolfe PM Sharp WH Li, Nature 1989 337 6204 283 285 10.1038/337283a0 2911369 (Pubitemid 19030568)
    • (1989) Nature , vol.337 , Issue.6204 , pp. 283-285
    • Wolfe, K.H.1    Sharp, P.M.2    Li, W.-H.3
  • 44
    • 33645242016 scopus 로고    scopus 로고
    • Evolutionary rates and expression level in Chlamydomonas
    • 10.1534/genetics.105.047399 16361241
    • Evolutionary rates and expression level in Chlamydomonas. CE Popescu T Borza JP Bielawski RW Lee, Genetics 2006 172 3 1567 1576 10.1534/genetics.105. 047399 16361241
    • (2006) Genetics , vol.172 , Issue.3 , pp. 1567-1576
    • Popescu, C.E.1    Borza, T.2    Bielawski, J.P.3    Lee, R.W.4
  • 45
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: A comparison of methods for detecting amino acid sites under selection
    • DOI 10.1093/molbev/msi105
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection. SL Kosakovsky Pond SDW Frost, Mol Biol Evol 2005 22 5 1208 1222 10.1093/molbev/msi105 15703242 (Pubitemid 40577758)
    • (2005) Molecular Biology and Evolution , vol.22 , Issue.5 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.W.2


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