On subset seeds for protein alignment

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 6, Issue 3, 2009, Pages 483-494

  Roytberg, Mikhail ^a   Gambin, Anna ^b   Noé, Laurent ^c   Lasota, Slawomir ^b   Furletova, Eugenia ^a   Szczurek, Ewa ^d   Kucherov, Gregory ^c  

^a INSTITUTE OF MATHEMATICAL PROBLEMS OF BIOLOGY   (Russian Federation)

^b UNIVERSITY OF WARSAW   (Poland)

^c ECOLE CENTRALE DE LILLE   (France)

^d MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

Local alignment; Multiple seeds; Protein databases; Protein sequences; Seed alphabet; Seeds; Selectivity; Sensitivity; Similarity search; Subset seeds

Indexed keywords

LOCAL ALIGNMENT; MULTIPLE SEEDS; PROTEIN DATABASES; PROTEIN SEQUENCES; SELECTIVITY; SENSITIVITY; SIMILARITY SEARCH; SUBSET SEEDS;

ALIGNMENT; DATABASE SYSTEMS; SET THEORY;

SEED;

AMINO ACID; PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; CLUSTER ANALYSIS; GENETICS; METHODOLOGY; NOMENCLATURE; ROC CURVE; SEQUENCE ALIGNMENT;

ALGORITHMS; AMINO ACID SEQUENCE; AMINO ACIDS; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; MODELS, BIOLOGICAL; PROTEINS; ROC CURVE; SEQUENCE ALIGNMENT; TERMINOLOGY AS TOPIC;

EID: 68649093945     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2009.4     Document Type: Article

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