-
1
-
-
0025183708
-
Basic local alignment search tool
-
S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman, "Basic Local Alignment Search Tool," J. Molecular Biology, vol. 215, no. 3, pp. 403-410, 1990.
-
(1990)
J. Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0036202921
-
PatternHunter: Faster and more sensitive homology search
-
Mar.
-
B. Ma, J. Tromp, and M. Li, "PatternHunter: Faster and More Sensitive Homology Search," Bioinformatics, vol. 18, no. 3, pp. 440-445, Mar. 2002.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
3
-
-
35248841126
-
Vector seeds: An extension to spaced seeds allows substantial improvements in sensitivity and specificity
-
B. Brejova, D. Brown, and T. Vinar, "Vector Seeds: An Extension to Spaced Seeds Allows Substantial Improvements in Sensitivity and Specificity," Proc. Third Ann. Workshop Algorithms in Bioinformatics, pp. 39-54, 2003.
-
(2003)
Proc. Third Ann. Workshop Algorithms in Bioinformatics
, pp. 39-54
-
-
Brejova, B.1
Brown, D.2
Vinar, T.3
-
4
-
-
4544349273
-
Patternhunter II: Highly sensitive and fast homology search
-
M. Li, B. Ma, D. Kisman, and J. Tromp, "Patternhunter II: Highly Sensitive and Fast Homology Search," J. Bioinformatics and Computational Biology, vol. 2, no. 3, pp. 419-439, 2004.
-
(2004)
J. Bioinformatics and Computational Biology
, vol.2
, Issue.3
, pp. 419-439
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
5
-
-
35048881469
-
Optimizing multiple spaced seeds for homology search
-
J. Xu, D. Brown, M. Li, and B. Ma, "Optimizing Multiple Spaced Seeds for Homology Search," Proc. 15th Ann. Symp. Combinatorial Pattern Matching, pp. 47-58, 2004.
-
(2004)
Proc. 15th Ann. Symp. Combinatorial Pattern Matching
, pp. 47-58
-
-
Xu, J.1
Brown, D.2
Li, M.3
Ma, B.4
-
7
-
-
19944406284
-
TPatternHunter: Gapped, fast and sensitive translated homology search
-
D. Kisman, M. Li, B. Ma, and L. Wang, "TPatternHunter: Gapped, Fast and Sensitive Translated Homology Search," Bioinformatics, 2004.
-
(2004)
Bioinformatics
-
-
Kisman, D.1
Li, M.2
Ma, B.3
Wang, L.4
-
8
-
-
0019887799
-
Identification of common molecular subsequences
-
T. Smith and M. Waterman, "Identification of Common Molecular Subsequences," J. Molecular Biology, vol. 147, pp. 195-197, 1981.
-
(1981)
J. Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.1
Waterman, M.2
-
10
-
-
0038039629
-
Designing seeds for similarity search in genomic DNA
-
J. Buhler, U. Keich, and Y. Sun, "Designing Seeds for Similarity Search in Genomic DNA," Proc. Seventh Ann. Int'l Conf. Computational Biology, pp. 67-75, 2003.
-
(2003)
Proc. Seventh Ann. Int'l Conf. Computational Biology
, pp. 67-75
-
-
Buhler, J.1
Keich, U.2
Sun, Y.3
-
11
-
-
4444360116
-
Optimal spaced seeds for homologous coding regions
-
Jan.
-
B. Brejova, D. Brown, and T. Vinar, "Optimal Spaced Seeds for Homologous Coding Regions," J. Bioinformatics and Computational Biology, vol. 1, pp. 595-610, Jan. 2004.
-
(2004)
J. Bioinformatics and Computational Biology
, vol.1
, pp. 595-610
-
-
Brejova, B.1
Brown, D.2
Vinar, T.3
-
12
-
-
1642632854
-
On spaced seeds for similarity search
-
U. Keich, M. Li, B. Ma, and J. Tromp, "On Spaced Seeds for Similarity Search," Discrete Applied Math., vol. 138, pp. 253-263, 2004.
-
(2004)
Discrete Applied Math.
, vol.138
, pp. 253-263
-
-
Keich, U.1
Li, M.2
Ma, B.3
Tromp, J.4
-
13
-
-
2442674056
-
Good spaced seeds for homology search
-
K.P. Choi, F. Zeng, and L. Zhang, "Good Spaced Seeds for Homology Search," Bioinformatics, vol. 20, no. 7, pp. 1053-1059, 2004.
-
(2004)
Bioinformatics
, vol.20
, Issue.7
, pp. 1053-1059
-
-
Choi, K.P.1
Zeng, F.2
Zhang, L.3
-
14
-
-
4544227949
-
Estimating seed sensitivity on homogeneous alignments
-
G. Kucherov, L. Noé, and Y. Ponty, "Estimating Seed Sensitivity on Homogeneous Alignments," Proc. Fourth IEEE Int'l Symp. Bioinformatics and BioEng., pp. 387-394, 2004.
-
(2004)
Proc. Fourth IEEE Int'l Symp. Bioinformatics and BioEng.
, pp. 387-394
-
-
Kucherov, G.1
Noé, L.2
Ponty, Y.3
-
17
-
-
0842321997
-
Sensitive analysis and efficient method for identifying optimal spaced seeds
-
K. Choi and L. Zhang, "Sensitive Analysis and Efficient Method for Identifying Optimal Spaced Seeds," J. Computer and System Sciences, vol. 68, pp. 22-40, 2004.
-
(2004)
J. Computer and System Sciences
, vol.68
, pp. 22-40
-
-
Choi, K.1
Zhang, L.2
-
18
-
-
35048883434
-
Multiseed lossless filtration
-
G. Kucherov, L. Noé, and Y. Ponty, "Multiseed Lossless Filtration," Proc. 15th Ann. Symp. Combinatorial Pattern Matching, pp. 297-310, 2004.
-
(2004)
Proc. 15th Ann. Symp. Combinatorial Pattern Matching
, pp. 297-310
-
-
Kucherov, G.1
Noé, L.2
Ponty, Y.3
-
19
-
-
0032108328
-
A threshold of inn for approximating set cover
-
U. Feige, "A Threshold of Inn for Approximating Set Cover," J. ACM, vol. 45, pp. 634-652, 1998.
-
(1998)
J. ACM
, vol.45
, pp. 634-652
-
-
Feige, U.1
-
20
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
A. Bairoch and R. Apweiler, "The SWISS-PROT Protein Sequence Database and Its Supplement TrEMBL in 2000," Nucleic Acids Research, vol. 28, no. 1, pp. 45-48, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
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