-
1
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith,T. and Waterman,M. (1981) Identification of common molecular subsequences. J. Mol. Biol., 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.1
Waterman, M.2
-
2
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Lipman,D. and Pearson,W. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Lipman, D.1
Pearson, W.2
-
4
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S., Gish,W., Miller,W., Myers,E. and Lipman,D. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
5
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S., Madden,T., Schäffer,A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schäffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
6
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz,S., Kent,J., Smit,A., Zhang,Z., Baertsch,R., Hardison,R., Haussler,D. and Miller,W. (2003) Human-mouse alignments with BLASTZ. Genome Res., 13, 103-107.
-
(2003)
Genome Res.
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.6
Haussler, D.7
Miller, W.8
-
7
-
-
0036202921
-
PatternHunter: Faster and more sensitive homology search
-
Ma,B., Tromp,J. and Li,M. (2002) PatternHunter: Faster and more sensitive homology search. Bioinformatics, 18, 440-45.
-
(2002)
Bioinformatics
, vol.18
, pp. 440-445
-
-
Ma, B.1
Tromp, J.2
Li, M.3
-
8
-
-
84947556531
-
Better filtering with gapped q-grams
-
1-4 July, Jerusalem, Israel, LNCS 2089, Springer
-
Burkhardt,S. and Kärkkäinen,J. (2001) Better filtering with gapped q-grams. In Proceedings of the 12th Symposium on Combinatorial Pattern Matching (CPM'01), 1-4 July, Jerusalem, Israel, LNCS 2089, Springer, pp. 73-85.
-
(2001)
Proceedings of the 12th Symposium on Combinatorial Pattern Matching (CPM'01)
, pp. 73-85
-
-
Burkhardt, S.1
Kärkkäinen, J.2
-
9
-
-
4544349273
-
PatternHunter II: Highly sensitive and fast homology search
-
Li,M., Ma,B., Kisman,D. and Tromp,J. (2004) PatternHunter II: Highly sensitive and fast homology search. J. Bioinform. Comput. Biol., 2, 417-439.
-
(2004)
J. Bioinform. Comput. Biol.
, vol.2
, pp. 417-439
-
-
Li, M.1
Ma, B.2
Kisman, D.3
Tromp, J.4
-
10
-
-
35248817344
-
Optimal spaced seeds for hidden Markov models, with application to homologous coding regions
-
Baeza-Yates,R., Chavez,E. and Crochemore,M. (eds), 25-27 June, Morelia, Mexico, LNCS 2676, Springer
-
Brejova,B., Brown,D. and Vinar,T. (2003) Optimal spaced seeds for hidden Markov models, with application to homologous coding regions. In Baeza-Yates,R., Chavez,E. and Crochemore,M. (eds), Proceedings of the 14th Symposium on Combinatorial Pattern Matching, 25-27 June, Morelia, Mexico, LNCS 2676, Springer, pp. 42-54.
-
(2003)
Proceedings of the 14th Symposium on Combinatorial Pattern Matching
, pp. 42-54
-
-
Brejova, B.1
Brown, D.2
Vinar, T.3
-
11
-
-
0038039629
-
Designing seeds for similarity search in genomic DNA
-
10-13 April, Berlin, Germany, ACM Press
-
Buhler,J., Keich,U. and Sun,Y. (2003) Designing seeds for similarity search in genomic DNA. In Proceedings of the 7th Annual International Conference on Computational Molecular Biology (RECOMB'03), 10-13 April, Berlin, Germany, ACM Press, pp. 67-75.
-
(2003)
Proceedings of the 7th Annual International Conference on Computational Molecular Biology (RECOMB'03)
, pp. 67-75
-
-
Buhler, J.1
Keich, U.2
Sun, Y.3
-
12
-
-
2442674056
-
Good spaced seeds for homology search
-
Choi,K.P., Zeng,F. and Zhang,L. (2004) Good spaced seeds for homology search. Bioinformatics, 20, 1053-1059.
-
(2004)
Bioinformatics
, vol.20
, pp. 1053-1059
-
-
Choi, K.P.1
Zeng, F.2
Zhang, L.3
-
13
-
-
1642632854
-
On spaced seeds for similarity search
-
Keich,U., Li,M., Ma,B. and Tromp,J. (2004) On spaced seeds for similarity search. Discrete Appl. Math., 138, 253-263.
-
(2004)
Discrete Appl. Math.
, vol.138
, pp. 253-263
-
-
Keich, U.1
Li, M.2
Ma, B.3
Tromp, J.4
-
14
-
-
4544227949
-
Estimating seed sensitivity on homogeneous alignments
-
May 19-21, Taichung, Taiwan, IEEE Computer Society Press
-
Kucherov,G., Noé,L. and Ponty,Y. (2004) Estimating seed sensitivity on homogeneous alignments. In Proceedings of the IEEE 4th Symposium on Bioinformatics and Bioengineering (BIBE2004), May 19-21, Taichung, Taiwan, IEEE Computer Society Press, pp. 387-394.
-
(2004)
Proceedings of the IEEE 4th Symposium on Bioinformatics and Bioengineering (BIBE2004)
, pp. 387-394
-
-
Kucherov, G.1
Noé, L.2
Ponty, Y.3
-
15
-
-
28744455938
-
A unifying framework for seed sensitivity and its application to subset seeds
-
Rapport de recherche INRIA RR-5374
-
Kucherov,G., Noé,L. and Roytberg,M. (2004) A unifying framework for seed sensitivity and its application to subset seeds. Rapport de recherche INRIA RR-5374. http://www.inria.fr/rrrt/rr-5374.html.
-
(2004)
-
-
Kucherov, G.1
Noé, L.2
Roytberg, M.3
-
16
-
-
13244251074
-
Improved hit criteria for DNA local alignment
-
Noé,L. and Kucherov,G. (2004) Improved hit criteria for DNA local alignment. BMC Bioinformatics, 5, 149.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 149
-
-
Noé, L.1
Kucherov, G.2
-
17
-
-
0033555906
-
Tandem repeats finder: A program to analyse DNA sequences
-
Benson,G. (1999) Tandem repeats finder: A program to analyse DNA sequences. Nucleic Acids Res., 27, 573-580.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 573-580
-
-
Benson, G.1
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