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Volumn 3109, Issue , 2004, Pages 297-310

Multi-seed lossless filtration

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDES;

EID: 35048883434     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-27801-6_22     Document Type: Article
Times cited : (14)

References (21)
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    • Preliminary version in Combinatorial Pattern Matching 2001
    • Burkhardt, S., Kärkkäinen, J.: Better filtering with gapped q-grams. Fundamenta Informaticae 56 (2003) 51-70 Preliminary version in Combinatorial Pattern Matching 2001.
    • (2003) Fundamenta Informaticae , vol.56 , pp. 51-70
    • Burkhardt, S.1    Kärkkäinen, J.2
  • 4
    • 0036202921 scopus 로고    scopus 로고
    • PatternHunter: Faster and more sensitive homology search
    • Ma, B., Tromp, J., Li, M.: PatternHunter: Faster and more sensitive homology search. Bioinformatics 18 (2002) 440-445
    • (2002) Bioinformatics , vol.18 , pp. 440-445
    • Ma, B.1    Tromp, J.2    Li, M.3
  • 6
    • 2442648397 scopus 로고    scopus 로고
    • YASS: Similarity search in DNA sequences
    • INRIA
    • Noe, L., Kucherov, G.: YASS: Similarity search in DNA sequences. Research Report RR-4852, INRIA (2003) http://www.inria.fr/rrrt/rr-4852.html.
    • (2003) Research Report RR-4852
    • Noe, L.1    Kucherov, G.2
  • 7
    • 0029185211 scopus 로고
    • Multiple filtration and approximate pattern matching
    • Pevzner, P., Waterman, M.: Multiple filtration and approximate pattern matching. Algorithmica 13 (1995) 135-154
    • (1995) Algorithmica , vol.13 , pp. 135-154
    • Pevzner, P.1    Waterman, M.2
  • 12
    • 35248841126 scopus 로고    scopus 로고
    • Vector seeds: An extension to spaced seeds allows substantial improvements in sensitivity and specificity
    • Benson, G., Page, R., eds.: Proceedings of the 3rd International Workshop in Algorithms in Bioinformatics (WABI), Budapest (Hungary). Springer
    • Brejova, B., Brown, D., Vinar, T.: Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity. In Benson, G., Page, R., eds.: Proceedings of the 3rd International Workshop in Algorithms in Bioinformatics (WABI), Budapest (Hungary). Volume 2812 of Lecture Notes in Computer Science., Springer (2003) 39-54
    • (2003) Lecture Notes in Computer Science , vol.2812 , pp. 39-54
    • Brejova, B.1    Brown, D.2    Vinar, T.3
  • 14
    • 2442683526 scopus 로고    scopus 로고
    • Sensitivity analysis and efficient method for identifying optimal spaced seeds
    • to appear
    • Choi, K., Zhang, L.: Sensitivity analysis and efficient method for identifying optimal spaced seeds. Journal of Computer and System Sciences (2003) to appear.
    • (2003) Journal of Computer and System Sciences
    • Choi, K.1    Zhang, L.2
  • 15
    • 0035190608 scopus 로고    scopus 로고
    • Selection of optimal DNA oligos for gene expression arrays
    • Li, F., Stormo, G.: Selection of optimal DNA oligos for gene expression arrays. Bioinformatics 17 (2001) 1067-1076
    • (2001) Bioinformatics , vol.17 , pp. 1067-1076
    • Li, F.1    Stormo, G.2
  • 16
    • 0036772248 scopus 로고    scopus 로고
    • Selecting signature oligonucleotides to identify organisms using DNA arrays
    • Kaderali, L., Schliep, A.: Selecting signature oligonucleotides to identify organisms using DNA arrays. Bioinformatics 18 (2002) 1340-1349
    • (2002) Bioinformatics , vol.18 , pp. 1340-1349
    • Kaderali, L.1    Schliep, A.2
  • 17
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    • Fast large scale oligonucleotide selection using the longest common factor approach
    • Rahmann, S.: Fast large scale oligonucleotide selection using the longest common factor approach. Journal of Bioinformatics and Computational Biology 1 (2003) 343-361
    • (2003) Journal of Bioinformatics and Computational Biology , vol.1 , pp. 343-361
    • Rahmann, S.1
  • 20
    • 4544349273 scopus 로고    scopus 로고
    • PatternHunter II: Highly sensitive and fast homology search
    • Earlier version in GIW 2003 (International Conference on Genome Informatics)
    • Li, M., Ma, B., Kisman, D., Tromp, J.: PatternHunter II: Highly sensitive and fast homology search. Journal of Bioinformatics and Computational Biology (2004) Earlier version in GIW 2003 (International Conference on Genome Informatics).
    • (2004) Journal of Bioinformatics and Computational Biology
    • Li, M.1    Ma, B.2    Kisman, D.3    Tromp, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.