BAliBASE (Benchmark Alignment dataBASE): Enhancements for repeats, transmembrane sequences and circular permutations

Nucleic Acids Research

Volumn 29, Issue 1, 2001, Pages 323-326

  Bahr, A ^a   Thompson, J D ^a   Thierry, J C ^a   Poch, O ^a  

^a INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN;

ACCURACY; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DATA BASE; EVALUATION; INTERNET; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE;

EID: 0035175770     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.1.323     Document Type: Article

References (18)

1. BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
2. A comprehensive comparison of multiple sequence alignment programs
3. Homology-based method for identification of protein repeats using statistical significance estimates
4. Computational approaches to identify leucine zippers
5. A method to recognize distant repeats in protein sequences
6. A fast algorithm for genome-wide analysis of proteins with repeated sequences
7. Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: The dense alignment surface method
8. SOSUI: Classification and secondary structure prediction system for membrane proteins
9. Prediction of membrane proteins based on classification of transmembrane segments
10. A simple method for predicting transmembrane alpha helices with better accuracy
11. A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: The PRED-TMR algorithm
12. Wavelet change-point prediction of transmembrane proteins
13. A simple algorithm for detecting circular permutations in proteins
14. Where freedom is given, liberties are take
15. The Pfam protein families database
16. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
17. Profile analysis: Detection of distantly related proteins
18. DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches