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Volumn 3109, Issue , 2004, Pages 47-58

Optimizing Multiple Spaced Seeds for Homology Search

Author keywords

[No Author keywords available]

Indexed keywords

LINEAR PROGRAMMING; PATTERN MATCHING;

EID: 35048881469     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-27801-6_4     Document Type: Article
Times cited : (32)

References (13)
  • 1
    • 0036202921 scopus 로고    scopus 로고
    • Patternhunter: Faster and more sensitive homology search
    • B. Ma, J. Tromp, and M. Li. Patternhunter: Faster and more sensitive homology search. Bioinfomatics, 18:440-445, 2002.
    • (2002) Bioinfomatics , vol.18 , pp. 440-445
    • Ma, B.1    Tromp, J.2    Li, M.3
  • 4
    • 35248841126 scopus 로고    scopus 로고
    • Vector seeds: An extension to spaced seeds allows substantial improvements in sensitivity and specificity
    • G. Benson and R. Page, editors, Budapest, Hungary, September Springer
    • Brona Brejova, Daniel Brown, and Tomas Vinar. Vector seeds: an extension to spaced seeds allows substantial improvements in sensitivity and specificity. In G. Benson and R. Page, editors, Algorithms and Bioinformatics: 3rd International Workshop (WABI), volume 2812 of Lecture Notes in Bioinformatics, pages 39-54, Budapest, Hungary, September 2003. Springer.
    • (2003) Algorithms and Bioinformatics: 3rd International Workshop (WABI), Volume 2812 of Lecture Notes in Bioinformatics , vol.2812 , pp. 39-54
    • Brejova, B.1    Brown, D.2    Vinar, T.3
  • 7
    • 0842321997 scopus 로고    scopus 로고
    • Sensitivity analysis and efficient method for identifying optimal spaced seeds
    • Kwok Pui Choi and Louxin Zhang. Sensitivity analysis and efficient method for identifying optimal spaced seeds. Journal of Computer and System Sciences, 68:22-40, 2004.
    • (2004) Journal of Computer and System Sciences , vol.68 , pp. 22-40
    • Choi, K.P.1    Zhang, L.2
  • 8
    • 35248817344 scopus 로고    scopus 로고
    • Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions
    • R. Baeza-Yates, E. Chavez, and M. Crochemore, editors, Morelia, Mexico, June 25-27 Springer
    • Brona Brejova, Daniel G. Brown, and Tomas Vinar. Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions. In R. Baeza-Yates, E. Chavez, and M. Crochemore, editors, Combinatorial Pattern Matching, 14th Annual Symposium (CPM), volume 2676 of Lecture Notes in Computer Science, pages 42-54, Morelia, Mexico, June 25-27 2003. Springer.
    • (2003) Combinatorial Pattern Matching, 14th Annual Symposium (CPM), Volume 2676 of Lecture Notes in Computer Science , vol.2676 , pp. 42-54
    • Brejova, B.1    Brown, D.G.2    Vinar, T.3
  • 10
    • 0002472851 scopus 로고    scopus 로고
    • Approximating covering and packing problems:set cover, vertex cover, independent set, and related problems
    • Dorit S. Hochbaum, editor, chapter 3, PWS
    • Dorit S. Hochbaum. Approximating covering and packing problems:set cover, vertex cover, independent set, and related problems. In Dorit S. Hochbaum, editor, Approximation Algorithms for NP-hard Problems, chapter 3, pages 135-137. PWS, 1997.
    • (1997) Approximation Algorithms for NP-hard Problems , pp. 135-137
    • Hochbaum, D.S.1
  • 11
    • 0032108328 scopus 로고    scopus 로고
    • A threshold of Inn for approximating set cover
    • Uriel Feige. A threshold of Inn for approximating set cover. Journal of the ACM, 45(4):634-652, 1998.
    • (1998) Journal of the ACM , vol.45 , Issue.4 , pp. 634-652
    • Feige, U.1
  • 13
    • 0000435276 scopus 로고
    • Probabilistic construction of deterministic algorithms: Approximating packing integer programs
    • October
    • P. Raghavan. Probabilistic construction of deterministic algorithms: Approximating packing integer programs. Journal of Computer and System Sciences, 37:130-143, October 1988.
    • (1988) Journal of Computer and System Sciences , vol.37 , pp. 130-143
    • Raghavan, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.