Structure and stability of a rat odorant-binding protein: Another brick in the wall

Journal of Proteome Research

Volumn 8, Issue 8, 2009, Pages 4005-4013

  Scirè, Andrea ^a   Marabotti, Anna ^b   Staiano, Maria ^b   Briand, Loic ^c   Varriale, Antonio ^b   Bertoli, Enrico ^a   Tanfani, Fabio ^a   D'Auria, Sabato ^b  

^a UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

^b CNR   (Italy)

^c CENTRE DES SCIENCES DU GOÛT ET DE L ALIMENTATION   (France)

Author keywords

Fourier transform infrared spectroscopy; Lipocalin; Odorant binding protein

Indexed keywords

BINDING PROTEIN; ODORANT BINDING PROTEIN 1F; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; INFRARED SPECTROSCOPY; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; RAT; THERMOSTABILITY;

ANIMALS; COMPUTER SIMULATION; LEAST-SQUARES ANALYSIS; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE, SECONDARY; RATS; RECEPTORS, ODORANT; RECOMBINANT PROTEINS; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TEMPERATURE;

RATTUS;

EID: 68549108037     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr900346z     Document Type: Article

References (40)

1. Steinbrecht, R. A. Ann. N.Y. Acad. Sci. 1998, 855, 323-332.
2. Flower, D. R.; North, A. C. T.; Sansom, C. E. Biochim. Biophys. Acta 2000, 1482, 9-24.
3. Tegoni, M.; Pelosi, P.; Vincent, F.; Spinelli, S.; Campanacci, V.; Grolli, S.; Ramoni, R.; Cambillau, C. Biochim. Biophys. Acta 2000, 1482, 229-240.
4. Bianchet, M. A.; Bains, G.; Pelosi, P.; Pevsner, J.; Snyder, S. H.; Monaco, H. L.; Amzel, L. M. Nat. Struct. Biol. 1996, 3, 934-939.
5. Tegoni, M.; Ramoni, R.; Bignetti, E.; Spinelli, S.; Cambillau, C. Nat. Struct. Biol. 1996, 3, 863-867.
6. Spinelli, S.; Ramoni, R.; Grolli, S.; Bonicel, J.; Cambillau, C.; Tegoni, M. Biochemistry 1998, 37, 7913-7918.
7. Pelosi, P. Cell. Mol. Life Sci. 2001, 58, 503-509.
8. Briand, L.; Eloit, C.; Nespoulous, C.; Bézirard, V.; Huet, J. C.; Henry, C.; Blon, F.; Trotier, D.; Pernollet, J. C. Biochemistry 2002, 41, 7241-7252.
9. Löbel, D.; Marchese, S.; Krieger, J.; Pelosi, P.; Breer, H. Eur. J. Biochem. 1998, 254, 318-324.
10. Briand, L.; Nespoulous, C.; Perez, V.; Rémy, J. J.; Huet, J. C.; Pernollet, J. C. Eur. J. Biochem. 2000, 267, 3079-3089.
11. Löbel, D.; Strotmann, J.; Jacob, M.; Breer, H. Chem. Senses 2001, 26, 673-680.
12. Salomaa, P.; Schaleger, L. L.; Long, F. A. J. Am. Chem. Soc. 1964, 86, 1-7.
13. Tanfani, F.; Galeazzi, T.; Curatola, G.; Bertoli, E.; Ferretti, G. Biochem. J. 1997, 322, 765-769.
14. Noda, I. Appl. Spectrosc. 1993, 47, 1329-1336.
15. Morita, S.; Ozaki, Y.; Noda, I. Appl. Spectrosc. 2001, 55, 1618-1621.
16. Noda, I.; Ozaki, Y. Generalized Two-Dimensional Correlation Spectroscopy. Applications in Vibrational and Optical Spectroscopy; Wiley: New York, 2004; p 295.
17. Fabian, H.; Mantsch, H. H.; Schultz, C. P. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 13153-13158.
18. Kuznetsova, I. M.; Turoverov, K. K.; Uversky, V. N. J. Proteome Res. 2004, 3, 485-494.
19. Lindahl, E.; Hess, B.; van der Spoel, D. J. Mol. Model. 2001, 7, 306-317.
20. van der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. C. J. Comput. Chem. 2005, 26, 1701-1718.
21. van Gunsteren, W. F.; Billeter, S. R.; Eising, A. A.; Hunenberger, P. H.; Kruger, P.; Mark, A. E.; Scott, W. R. P. TironiI. G. Biomolecular Simulation: The GROMOS96 Manual and User Guide; Vdf Hochschulverlag AG an der ETH Zurich: Zurich, Switzerland, 1996; p 1042.
22. Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Hermans, J. In Intermolecular Forces; Pullman B., Ed.; Reidel D. Publishing Company: Dordrecht, The Netherlands, 1981; pp 331-342.
23. Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. J. Comput. Chem. 1997, 18, 1463-1472.
24. Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Di Nola, A.; Haak, J. R. J. Chem. Phys. 1984, 81, 3684-3690.
25. Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. J. Chem. Phys. 1995, 103, 8577-8593.
26. Kabsch, W.; Sander, C. Biopolymers 1983, 22, 2577-2637.
27. Arrondo, J. L. R.; Muga, A.; Castresana, J.; Goni, F. M. Prog. Biophys. Mol. Biol. 1993, 59, 23-56.
28. Krimm, S.; Bandekar, J. Adv. Protein Chem. 1986, 38, 181-364.
29. Barth, A.; Zscherp, C. Q. Rev. Biophys. 2002, 35, 369-430.
30. Barth, A. Biochim. Biophys. Acta 2007, 1767, 1073-1101.
31. Ausili, A.; Cobucci-Ponzano, B.; Di Lauro, B.; D'Avino, R.; Perugino, G.; Bertoli, E.; Scirè, A.; Rossi, M.; Tanfani, F.; Moracci, M. Proteins 2007, 67, 991-1001.
32. Paolini, S.; Tanfani, F.; Fini, C.; Bertoli, E.; Pelosi, P. Biochim. Biophys. Acta 1999, 1431, 179-188.
33. Pedone, E.; Bartolucci, S.; Rossi, M.; Pierfederici, F. M.; Scirè, A.; Cacciamani, T.; Tanfani, F. Biochem. J. 2003, 373, 875-883.
34. Ausili, A.; Scirè, A.; Damiani, E.; Zolese, G.; Bertoli, E.; Tanfani, F. Biochemistry 2005, 44, 15997-16006.
35. Umemura, J.; Cameron, D. G.; Mantsch, H. H. Biochim. Biophys. Acta 1980, 602, 32-44.
36. Ausili, A.; Di Lauro, B.; Cobucci-Ponzano, B.; Bertoli, E.; Scirè, A.; Rossi, M.; Tanfani, F.; Moracci, M. Biochem. J. 2004, 384, 69-78.
37. D'Auria, S.; Alfieri, F.; Staiano, M.; Pelella, F.; Rossi, M.; Scirè, A.; Tanfani, F.; Bertoli, E.; Grycznyski, Z.; Lakowicz, R. Biotechnol. Prog. 2004, 20, 330-337.
38. Ptitsyn, O. B. In Protein Folding; Creighton, T. E., Ed.; W. H. Freeman and Company: New York, 1992; pp 243-300.
39. Marabotti, A.; Scirè, A.; Staiano, M.; Crescenzo, R.; Aurilia, V.; Tanfani, F.; D'Auria, S. J. Proteome Res. 2008, 7, 5221-5229.
40. Marabotti, A.; Lefèvre, T.; Staiano, M.; Crescenzo, R.; Varriale, A.; Rossi, M.; Pézolet, M.; D'Auria, S. Proteins 2008, 72, 769-778.