Wild-type and mutant bovine odorant-binding proteins to probe the role of the quaternary structure organization in the protein thermal stability

Journal of Proteome Research

Volumn 7, Issue 12, 2008, Pages 5221-5229

  Marabotti, Anna ^a   Scirè, Andrea ^b   Staiano, Maria ^c   Crescenzo, Roberta ^c   Aurilia, Vincenzo ^c   Tanfani, Fabio ^b   D'Auria, Sabato ^c,d  

^a CNR   (Italy)

^b UNIVERSITÀ POLITECNICA DELLE MARCHE   (Italy)

^c INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^d CNR   (Italy)

Author keywords

FT IR; Lipocalins; MD; Odorant binding protein

Indexed keywords

BINDING PROTEIN; BOVINE ODORANT BINDING PROTEIN; PROTEIN SUBUNIT; UNCLASSIFIED DRUG;

ARTICLE; CORRELATION ANALYSIS; DYNAMICS; HEATING; HYDROPHOBICITY; INFRARED RADIATION; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTEIN QUATERNARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; SIMULATION; STRUCTURE ANALYSIS; TEMPERATURE MEASUREMENT; TEMPERATURE STRESS; THERMOSTABILITY;

ANIMALS; CATTLE; COMPUTER SIMULATION; LIPOCALINS; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MUTATION; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, ODORANT; SPECTROPHOTOMETRY, INFRARED; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TEMPERATURE;

BOVINAE;

EID: 61349111425     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr800528b     Document Type: Article

References (45)

1. Grzyb, J.; Latowski, D.; Strzalka, K. J. Plant Physiol. 2006, 163, 895-915.
2. Briand, L.; Eloit, C.; Nespoulous, C.; Bezirard, V.; Huet, J. C.; Henry, C.; Blon, F.; Trotier, D.; Pernollet, J. C. Biochemistry 2002, 41, 7241-7252.
3. Pevsner, J.; Snyder, S. H. Chem. Senses 1990, 15, 217-222.
4. Flower, D. R.; North, A. C. T.; Sansom, C. E. Biochim. Biophys. Acta 2000, 1482, 9-24.
5. Boudjelal, M.; Sivaprasadarao, A.; Findlay, J. B. C. Biochem. J. 1996, 317, 23-27.
6. Tegoni, M.; Pelosi, P.; Vincent, F.; Spinelli, S.; Campanacci, V.; Grolli, S.; Ramoni, R.; Cambillau, C. Biochim. Biophys. Acta 2000, 1482, 229-240.
7. Flower, D. R. Biochim. Biophys. Acta 2000, 1482, 46-56.
8. Bianchet, M. A.; Bains, G.; Pelosi, P.; Pevsner, J.; Snyder, S. H.; Monaco, H. L.; Amzel, L. M. Nat. Struct. Biol. 1996, 3, 934-939.
9. Ramoni, R.; Spinelli, S.; Grolli, S.; Conti, V.; Merli, E.; Cambillau, C.; Tegoni, M. Biochim. Biophys. Acta 2008, 1784 (4), 651-657.
10. Stepanenko, O. V.; Marabotti, A.; Kuznetsova, I. M.; Turoverov, K. K.; Fini, C.; Varriale, A.; Staiano, M.; D'Auria, S. Proteins 2008, 71, 35-44.
11. Marabotti, A.; Lefevre, T.; Staiano, M.; Crescenzo, R; Varriale, A.; Rossi, M.; Pezolet, M.; D'Auria, S. Proteins 2008, 72, 769-778.
12. D'Auria, S.; Staiano, M.; Varriale, A.; Gonnelli, M.; Marabotti, A.; Rossi, M.; Strambini, G. J. Proteome Res. 2008, 7, 1151-1158.
13. Salomaa, P.; Schaleger, L. L.; Long, F. A. J. Am. Chem. Soc. 1964, 86, 1-7.
14. Tanfani, F.; Galeazzi, T.; Curatola, G.; Bertoli, E.; Ferretti, G. Biochem. J. 1997, 322, 765-769.
15. Morita, S.; Ozaki, Y.; Noda, I. Appl. Spectrosc. 2001, 55, 1618-1621.
16. Noda, I.; Ozaki, Y. Generalized Two-Dimensional Correlation Spectroscopy. Applications in Vibrational and Optical Spectroscopy; Wiley: New York, 2004.
17. Fabian, H.; Mantsch, H. H.; Schultz, C. P. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 13153-13158.
18. Berman, H.; Henrick, K.; Nakamura, H.; Markley, J. L. Nucleic Acids Res. 2007, 35 (Database issue), D301-D303.
19. Ramoni, R; Vincent, F.; Grolli, S.; Conti, V.; Malosse, C.; Boyer, F. D.; Nagnan-Le Meillour, P.; Spinelli, S.; Cambillau, C.; Tegoni, M. J. Biol. Chem. 2001, 276, 7150-7155.
20. Lindahl, E.; Hess, B.; van der Spoel, D. J. Mol. Model. 2001, 7, 306-317.
21. van der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. J. Comput. Chem. 2005, 26, 1701-1718.
22. van Gunsteren, W. F.; Billeter, S. R.; Eising, A. A.; Hunenberger, P. H.; Kruger, P.; Mark, A. E.; Scott, W. R. P.; Tironi, I. G.; Biomolecular Simulation: The GROMOS96 Manual and User Guide; Vdf Hochschulverlag AG an der ETH Zurich: Zurich, Switzerland, 1996; p 1042.
23. Schuettelkopf, A. W.; van Aalten, D. M. F. Acta Crystallogr., D 2004, 60, 1355-1363.
24. Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.; Hermans, J. In Intermolecular Forces; Pullman B., Ed.; Reidel D. Publishing Company: Dordrecht, The Netherlands, 1981; p 331-342.
25. Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. J. Comput. Chem. 1997, 18, 1463-1472.
26. Berendsen, H. J. C.; Postma, J. P. M.; Di Nola, A.; Haak, J. R. J. Phys. Chem. 1984, 81, 3684-3690.
27. Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. J. Chem. Phys. 1995, 103, 8577-8593.
28. Kabsch, W.; Sander, C. Biopolymers 1983, 22, 2577-2637.
29. Kumar, S.; Nussinov, R. J. Mol. Biol. 1999, 293, 1241-1255.
30. Arrondo, J. L. R.; Muga, A.; Castresana, J.; Goni, F. M. Prog. Biophys. Mol. Biol. 1993, 59, 23-56.
31. Krimm, S.; Bandekar, J. Adv. Protein Chem. 1986, 38, 181-364.
32. Byler, D. M.; Susi, H. Biopolymers 1986, 25, 469-487.
33. Barth, A.; Zsherp, C. Q. Rev. Biophys. 2002, 35, 369-430.
34. Barth, A. Biochim. Biophys. Acta 2007, 1767, 1073-1101.
35. Pedone, E.; Bartolucci, S.; Rossi, M.; Pierfederici, F. M.; Scirè, A.; Cacciamani, T.; Tanfani, F. Biochem. J. 2003, 373, 875-883.
36. Ausili, A.; Cobucci-Ponzano, B.; Di Lauro, B.; D'Avino, R.; Perugino, G.; Bertoli, E.; Scirè, A.; Rossi, M.; Tanfani, F.; Moracci, M. Proteins 2007, 67, 991-1001.
37. Paolini, S.; Tanfani, F.; Fini, C.; Bertoli, E.; Pelosi, P. Biochem. Biophys. Acta 1999, 1431, 179-188.
38. Ausili, A.; Scirè, A.; Damiani, E.; Zolese, G.; Bertoli, E.; Tanfani, F Biochemistry 2005, 44, 15997-16006.
39. Noda, I. Appl. Spectrosc. 1993, 47, 1329-1336.
40. Umemura, J.; Cameron, D. G.; Mantsch, H. H. Biochim. Biophys. Acta 1980, 602, 32-44.
41. Ptitsyn, O. B. The molten globule state. In Protein Folding; Creighton, T. E., Ed.; W. H. Freeman and Company: New York, 1992; pp 243-300.
42. Seshadri, S.; Khurana, R.; Fink, A. L. Methods Enzymol. 1999, 309, 559-576.
43. Knapp, S.; de Vos, W. M.; Rice, D.; Ladenstein, R. J. Mol. Biol. 1997, 267, 916-932.
44. Goldman, A. Structure 1995, 3, 1277-79.
45. Fessas, D.; Staiano, M.; Barbiroli, A.; Marabotti, A.; Schiraldi, A.; Varriale, A.; Rossi, M.; D'Auria. S Proteins 2007, 67, 1002-9.