-
1
-
-
0025778840
-
Atomic-structure of acetylcholinesterase from torpedo-californica - a prototypic acetylcholine-binding protein
-
Sussman,J.L., Harel,M., Frolow,F., Oefner,C., Goldman,A., Toker,L. and Silman,I. (1991) Atomic-structure of acetylcholinesterase from torpedo-californica - a prototypic acetylcholine-binding protein. Science, 253, 872-879.
-
(1991)
Science
, vol.253
, pp. 872-879
-
-
Sussman, J.L.1
Harel, M.2
Frolow, F.3
Oefner, C.4
Goldman, A.5
Toker, L.6
Silman, I.7
-
2
-
-
6344222799
-
Crystal structure of a eukaryotic zinc-dependent histone deacetylase, human HDAC8, complexed with a hydroxamic acid inhibitor
-
Vannini,A., Volpari,C., Filocamo,G., Casavola,E.C., Brunetti,M., Renzoni,D., Chakravarty,P., Paolini,C., De Francesco,R., Gallinari,P. et al. (2004) Crystal structure of a eukaryotic zinc-dependent histone deacetylase, human HDAC8, complexed with a hydroxamic acid inhibitor. Proc. Natl Acad. Sci. USA, 101, 15064-15069.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 15064-15069
-
-
Vannini, A.1
Volpari, C.2
Filocamo, G.3
Casavola, E.C.4
Brunetti, M.5
Renzoni, D.6
Chakravarty, P.7
Paolini, C.8
De Francesco, R.9
Gallinari, P.10
-
3
-
-
0033539092
-
Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors
-
Finnin,M.S., Donigian,J.R., Cohen,A., Richon,V.M., Rifkind,R.A., Marks,P.A., Breslow,R. and Pavletich,N.P. (1999) Structures of a histone deacetylase homologue bound to the TSA and SAHA inhibitors. Nature 401, 188-193.
-
(1999)
Nature
, vol.401
, pp. 188-193
-
-
Finnin, M.S.1
Donigian, J.R.2
Cohen, A.3
Richon, V.M.4
Rifkind, R.A.5
Marks, P.A.6
Breslow, R.7
Pavletich, N.P.8
-
4
-
-
0035398487
-
G-protein-coupled receptors and signaling networks: Emerging paradigms
-
Marinissen,M.J. and Gutkind,J.S. (2001) G-protein-coupled receptors and signaling networks: Emerging paradigms. Trends Pharmacol. Sci., 22, 368-376.
-
(2001)
Trends Pharmacol. Sci
, vol.22
, pp. 368-376
-
-
Marinissen, M.J.1
Gutkind, J.S.2
-
5
-
-
1242340323
-
The ABCs of solute carriers: Physiological, pathological and therapeutic implications of human membrane transport proteins - introduction
-
Hediger,M.A., Romero,M.F., Peng,J.B., Rolfs,A., Takanaga,H. and Bruford,E.A. (2004) The ABCs of solute carriers: Physiological, pathological and therapeutic implications of human membrane transport proteins - introduction. Pflugers Arch.-Eur. J. Physiol., 447 465-468.
-
(2004)
Pflugers Arch.-Eur. J. Physiol
, vol.447
, pp. 465-468
-
-
Hediger, M.A.1
Romero, M.F.2
Peng, J.B.3
Rolfs, A.4
Takanaga, H.5
Bruford, E.A.6
-
6
-
-
0027145628
-
The pore dimensions of gramicidin - A
-
Smart,O.S., Goodfellow,J.M. and Wallace,B.A. (1993) The pore dimensions of gramicidin - A. Biophys. J., 65, 2455-2460.
-
(1993)
Biophys. J
, vol.65
, pp. 2455-2460
-
-
Smart, O.S.1
Goodfellow, J.M.2
Wallace, B.A.3
-
7
-
-
0030404988
-
HOLE: A program for the analysis of the pore dimensions of ion channel structural models
-
Smart,O.S., Neduvelil,J.G., Wang,X., Wallace,B.A. and Sansom,M.S.P. (1996) HOLE: A program for the analysis of the pore dimensions of ion channel structural models. J. Mol. Graph., 14, 354-360.
-
(1996)
J. Mol. Graph
, vol.14
, pp. 354-360
-
-
Smart, O.S.1
Neduvelil, J.G.2
Wang, X.3
Wallace, B.A.4
Sansom, M.S.P.5
-
8
-
-
35748972048
-
MOLE: A Voronoi diagram-based explorer of molecular channels, pores, and tunnels
-
Petrek,M., Kosinova,P., Koca,J. and Otyepka,M. (2007) MOLE: A Voronoi diagram-based explorer of molecular channels, pores, and tunnels. Structure, 15, 1357-1363.
-
(2007)
Structure
, vol.15
, pp. 1357-1363
-
-
Petrek, M.1
Kosinova, P.2
Koca, J.3
Otyepka, M.4
-
9
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris,G.M., Goodsell,D.S., Halliday,R.S., Huey,R., Hart,W.E., Belew,R.K. and Olson,A.J. (1998) Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J. Comput. Chem., 19, 1639-1662.
-
(1998)
J. Comput. Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
10
-
-
33947716119
-
A semiempirical free energy force field with charge-based desolvation
-
Huey,R., Morris,G.M., Olson,A.J. and Goodsell,D.S. (2007) A semiempirical free energy force field with charge-based desolvation. J. Computat. Chem., 28, 1145-1152.
-
(2007)
J. Computat. Chem
, vol.28
, pp. 1145-1152
-
-
Huey, R.1
Morris, G.M.2
Olson, A.J.3
Goodsell, D.S.4
-
11
-
-
23144462493
-
MEDock: A web server for efficient prediction of ligand binding sites based on a novel optimization algorithm
-
Chang,D.T.H., Oyang,Y.J. and Lin,J.H. (2005) MEDock: A web server for efficient prediction of ligand binding sites based on a novel optimization algorithm. Nucleic Acids Res, 33, W233-W238.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Chang, D.T.H.1
Oyang, Y.J.2
Lin, J.H.3
-
12
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh,A., Larsson,B., von Heijne,G. and Sonnhammer,E.L.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol., 305, 567-580.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.L.4
-
13
-
-
4444221565
-
UCSF chimera - a visualization system for exploratory research and analysis
-
Pettersen,E.F., Goddard,T.D., Huang,C.C., Couch,G.S., Greenblatt,D.M., Meng,E.C. and Ferrin,T.E. (2004) UCSF chimera - a visualization system for exploratory research and analysis. J. Comput. Chem., 25, 1605-1612.
-
(2004)
J. Comput. Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
14
-
-
0033397980
-
Python: A programming language for software integration and development
-
Sanner,M.F. (1999) Python: A programming language for software integration and development. J. Mol. Graph., 17, 57-61.
-
(1999)
J. Mol. Graph
, vol.17
, pp. 57-61
-
-
Sanner, M.F.1
-
16
-
-
34547559704
-
PDB2PQR: Expanding and upgrading automated preparation of biomolecular structures for molecular simulations
-
Dolinsky,T.J., Czodrowski,P., Li,H., Nielsen,J.E., Jensen,J.H., Klebe,G. and Baker,N.A. (2007) PDB2PQR: Expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res., 35, W522-W525.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Dolinsky, T.J.1
Czodrowski, P.2
Li, H.3
Nielsen, J.E.4
Jensen, J.H.5
Klebe, G.6
Baker, N.A.7
-
17
-
-
0037157153
-
Computational drug design accommodating receptor flexibility: The relaxed complex scheme
-
Lin,J.H., Perryman,A.L., Schames,J.R. and McCammon,J.A. (2002) Computational drug design accommodating receptor flexibility: The relaxed complex scheme. J. Am. Chem. Soc., 124, 5632-5633.
-
(2002)
J. Am. Chem. Soc
, vol.124
, pp. 5632-5633
-
-
Lin, J.H.1
Perryman, A.L.2
Schames, J.R.3
McCammon, J.A.4
-
18
-
-
0037231646
-
The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme
-
Lin,J.H., Perryman,A.L., Schames,J.R. and McCammon,J.A. (2003) The relaxed complex method: Accommodating receptor flexibility for drug design with an improved scoring scheme. Biopolymers, 68, 47-62.
-
(2003)
Biopolymers
, vol.68
, pp. 47-62
-
-
Lin, J.H.1
Perryman, A.L.2
Schames, J.R.3
McCammon, J.A.4
-
19
-
-
12344321851
-
Predicting the three-dimensional structure of the human facilitative glucose transporter Glut1 by a novel evolutionary homology strategy: Insights on the molecular mechanism of substrate migration, and binding sites for glucose and inhibitory molecules
-
Salas-Burgos,A., Iserovich,P., Zuniga,F., Vera,J.C. and Fischbarg,J. (2004) Predicting the three-dimensional structure of the human facilitative glucose transporter Glut1 by a novel evolutionary homology strategy: Insights on the molecular mechanism of substrate migration, and binding sites for glucose and inhibitory molecules. Biophys. J. 87, 2990-2999.
-
(2004)
Biophys. J
, vol.87
, pp. 2990-2999
-
-
Salas-Burgos, A.1
Iserovich, P.2
Zuniga, F.3
Vera, J.C.4
Fischbarg, J.5
-
20
-
-
0033954256
-
The protein data bank
-
Berman,H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The protein data bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
21
-
-
34548242739
-
GLUT1 deficiency syndrome - 2007 update
-
Klepper,J. and Leiendecker,B. (2007) GLUT1 deficiency syndrome - 2007 update. Dev. Med. Child Neurol., 49, 707-716.
-
(2007)
Dev. Med. Child Neurol
, vol.49
, pp. 707-716
-
-
Klepper, J.1
Leiendecker, B.2
-
22
-
-
0041489951
-
Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli
-
Huang,Y.F., Lemieux,M.J., Song,J.M., Auer,M. and Wang,D.N. (2003) Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli. Science, 301, 616-620.
-
(2003)
Science
, vol.301
, pp. 616-620
-
-
Huang, Y.F.1
Lemieux, M.J.2
Song, J.M.3
Auer, M.4
Wang, D.N.5
-
23
-
-
33748310520
-
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism
-
Seeger,M.A., Schiefner,A., Eicher,T., Verrey,F., Diederichs,K. and Pos,K.M. (2006) Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism. Science, 313, 1295-1298.
-
(2006)
Science
, vol.313
, pp. 1295-1298
-
-
Seeger, M.A.1
Schiefner, A.2
Eicher, T.3
Verrey, F.4
Diederichs, K.5
Pos, K.M.6
-
24
-
-
0028922586
-
Ligplot - a a program to generate schematic diagrams of protein ligand interactions
-
Wallace,A.C., Laskowski,R.A. and Thornton,J.M. (1995) Ligplot - a a program to generate schematic diagrams of protein ligand interactions. Protein Eng., 8, 127-134.
-
(1995)
Protein Eng
, vol.8
, pp. 127-134
-
-
Wallace, A.C.1
Laskowski, R.A.2
Thornton, J.M.3
-
25
-
-
35248846115
-
2D depiction of protein - ligand complexes
-
Clark,A.M. and Labute,P. (2007) 2D depiction of protein - ligand complexes. J. Chem. Inform. Model., 47, 1933-1944.
-
(2007)
J. Chem. Inform. Model
, vol.47
, pp. 1933-1944
-
-
Clark, A.M.1
Labute, P.2
|