-
1
-
-
10344232466
-
Type V protein secretion pathway: The autotransporter story
-
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D (2004) Type V protein secretion pathway: the autotransporter story. Microbiol Mol Biol Rev 68: 692-744.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 692-744
-
-
Henderson, I.R.1
Navarro-Garcia, F.2
Desvaux, M.3
Fernandez, R.C.4
Ala'Aldeen, D.5
-
2
-
-
35848952765
-
Protein secretion in gram-negative Bacteria via the autotransporter pathway
-
Dautin N, Bernstein HD (2007) Protein secretion in gram-negative Bacteria via the autotransporter pathway. Annu Rev Microbiol 61: 89-112.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 89-112
-
-
Dautin, N.1
Bernstein, H.D.2
-
3
-
-
33845661120
-
Beta-rolls, beta-helices, and other beta-solenoid proteins
-
Kajava AV, Steven AC (2006) Beta-rolls, beta-helices, and other beta-solenoid proteins. Adv Protein Chem 73: 55-96.
-
(2006)
Adv Protein Chem
, vol.73
, pp. 55-96
-
-
Kajava, A.V.1
Steven, A.C.2
-
4
-
-
3843116530
-
Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917
-
Grozdanov L, Raasch C, Schulze J, Sonnenborn U, Gottschalk G, et al. (2004) Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917. J Bacteriol 186: 5432-5441.
-
(2004)
J Bacteriol
, vol.186
, pp. 5432-5441
-
-
Grozdanov, L.1
Raasch, C.2
Schulze, J.3
Sonnenborn, U.4
Gottschalk, G.5
-
5
-
-
0035111746
-
Virulence functions of autotransporter proteins
-
Henderson IR, Nataro JP (2001) Virulence functions of autotransporter proteins. Infect Immun 69: 1231-1243.
-
(2001)
Infect Immun
, vol.69
, pp. 1231-1243
-
-
Henderson, I.R.1
Nataro, J.P.2
-
6
-
-
0036893427
-
Functional comparison of serine protease autotransporters of Enterobacteriaceae
-
Dutta PR, Cappello R, Navarro-Garcia F, Nataro JP (2002) Functional comparison of serine protease autotransporters of Enterobacteriaceae. Infect Immun 70: 7105-7113.
-
(2002)
Infect Immun
, vol.70
, pp. 7105-7113
-
-
Dutta, P.R.1
Cappello, R.2
Navarro-Garcia, F.3
Nataro, J.P.4
-
7
-
-
0030917724
-
EspP, a novel extracellular serine protease of enterohaemorrhagic Escherichia coli O157:H7 cleaves human coagulation factor V
-
Brunder W, Schmidt H, Karch H (1997) EspP, a novel extracellular serine protease of enterohaemorrhagic Escherichia coli O157:H7 cleaves human coagulation factor V. Mol Microbiol 24: 767-778.
-
(1997)
Mol Microbiol
, vol.24
, pp. 767-778
-
-
Brunder, W.1
Schmidt, H.2
Karch, H.3
-
8
-
-
24044469996
-
Enterohaemorrhagic Escherichia coli in human medicine
-
Karch H, Tarr PI, Bielaszewska M (2005) Enterohaemorrhagic Escherichia coli in human medicine. Int J Med Microbiol 295: 405-418.
-
(2005)
Int J Med Microbiol
, vol.295
, pp. 405-418
-
-
Karch, H.1
Tarr, P.I.2
Bielaszewska, M.3
-
9
-
-
15244348050
-
Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome
-
Tarr PI, Gordon CA, Chandler WL (2005) Shiga-toxin-producing Escherichia coli and haemolytic uraemic syndrome. Lancet 365: 1073-1086.
-
(2005)
Lancet
, vol.365
, pp. 1073-1086
-
-
Tarr, P.I.1
Gordon, C.A.2
Chandler, W.L.3
-
10
-
-
33847370391
-
Hemolysin from Shiga toxin-negative Escherichia coli O26 strains injures microvascular endothelium
-
Aldick T, Bielaszewska M, Zhang W, Brockmeyer J, Schmidt H, et al. (2007) Hemolysin from Shiga toxin-negative Escherichia coli O26 strains injures microvascular endothelium. Microbes Infect 9: 282-290.
-
(2007)
Microbes Infect
, vol.9
, pp. 282-290
-
-
Aldick, T.1
Bielaszewska, M.2
Zhang, W.3
Brockmeyer, J.4
Schmidt, H.5
-
11
-
-
11144292662
-
Cytolethal distending toxin from Shiga toxin-producing Escherichia coli O157 causes irreversible G2/M arrest, inhibition of proliferation, and death of human endothelial cells
-
Bielaszewska M, Sinha B, Kuczius T, Karch H (2005) Cytolethal distending toxin from Shiga toxin-producing Escherichia coli O157 causes irreversible G2/M arrest, inhibition of proliferation, and death of human endothelial cells. Infect Immun 73: 552-562.
-
(2005)
Infect Immun
, vol.73
, pp. 552-562
-
-
Bielaszewska, M.1
Sinha, B.2
Kuczius, T.3
Karch, H.4
-
12
-
-
23744481459
-
Consequences of enterohaemorrhagic Escherichia coli infection for the vascular endothelium
-
Bielaszewska M, Karch H (2005) Consequences of enterohaemorrhagic Escherichia coli infection for the vascular endothelium. Thromb Haemost 94: 312-318.
-
(2005)
Thromb Haemost
, vol.94
, pp. 312-318
-
-
Bielaszewska, M.1
Karch, H.2
-
13
-
-
34247238897
-
Cleavage of a bacterial autotransporter by an evolutionarily convergent autocatalytic mechanism
-
Dautin N, Barnard TJ, Anderson DE, Bernstein HD (2007) Cleavage of a bacterial autotransporter by an evolutionarily convergent autocatalytic mechanism. EMBO J 26: 1942-1952.
-
(2007)
EMBO J
, vol.26
, pp. 1942-1952
-
-
Dautin, N.1
Barnard, T.J.2
Anderson, D.E.3
Bernstein, H.D.4
-
14
-
-
36849016945
-
Autotransporter structure reveals intra-barrel cleavage followed by conformational changes
-
Barnard TJ, Dautin N, Lukacik P, Bernstein HD, Buchanan SK (2007) Autotransporter structure reveals intra-barrel cleavage followed by conformational changes. Nat Struct Mol Biol 14: 1214-1220.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1214-1220
-
-
Barnard, T.J.1
Dautin, N.2
Lukacik, P.3
Bernstein, H.D.4
Buchanan, S.K.5
-
15
-
-
36849048754
-
Incorporation of a polypeptide segment into the beta-domain pore during the assembly of a bacterial autotransporter
-
Ieva R, Skillman KM, Bernstein HD (2008) Incorporation of a polypeptide segment into the beta-domain pore during the assembly of a bacterial autotransporter. Mol Microbiol 67: 188-201.
-
(2008)
Mol Microbiol
, vol.67
, pp. 188-201
-
-
Ieva, R.1
Skillman, K.M.2
Bernstein, H.D.3
-
16
-
-
35448996075
-
Subtypes of the plasmid-encoded serine protease EspP in Shiga toxin-producing Escherichia coli: Distribution, secretion, and proteolytic activity
-
Brockmeyer J, Bielaszewska M, Fruth A, Bonn ML, Mellmann A, et al. (2007) Subtypes of the plasmid-encoded serine protease EspP in Shiga toxin-producing Escherichia coli: distribution, secretion, and proteolytic activity. Appl Environ Microbiol 73: 6351-6359.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 6351-6359
-
-
Brockmeyer, J.1
Bielaszewska, M.2
Fruth, A.3
Bonn, M.L.4
Mellmann, A.5
-
17
-
-
63549144223
-
Serine protease espP subtype α, but not β or γ, of Shiga toxin-producing Escherichia coli is associated with highly pathogenic serogroups
-
Khan AB, Naim A, Orth D, Grif K, Mohsin M, et al. (2008) Serine protease espP subtype α, but not β or γ, of Shiga toxin-producing Escherichia coli is associated with highly pathogenic serogroups. Int J Med Microbiol 299: 247-254.
-
(2008)
Int J Med Microbiol
, vol.299
, pp. 247-254
-
-
Khan, A.B.1
Naim, A.2
Orth, D.3
Grif, K.4
Mohsin, M.5
-
18
-
-
0017324044
-
Serine proteases: Structure and mechanism of catalysis
-
Kraut J (1977) Serine proteases: structure and mechanism of catalysis. Annu Rev Biochem 46: 331-358.
-
(1977)
Annu Rev Biochem
, vol.46
, pp. 331-358
-
-
Kraut, J.1
-
19
-
-
0030896832
-
Subtilases: The superfamily of subtilisin-like serine proteases
-
Siezen RJ, Leunissen JA (1997) Subtilases: the superfamily of subtilisin-like serine proteases. Protein Sci 6: 501-523.
-
(1997)
Protein Sci
, vol.6
, pp. 501-523
-
-
Siezen, R.J.1
Leunissen, J.A.2
-
20
-
-
0035914443
-
-
Fink DL, Cope LD, Hansen EJ, Geme JW3 St (2001) The Hemophilus influenzae Hap autotransporter is a chymotrypsin clan serine protease and undergoes autoproteolysis via an intermolecular mechanism. J Biol Chem 276: 39492-39500.
-
Fink DL, Cope LD, Hansen EJ, Geme JW3 St (2001) The Hemophilus influenzae Hap autotransporter is a chymotrypsin clan serine protease and undergoes autoproteolysis via an intermolecular mechanism. J Biol Chem 276: 39492-39500.
-
-
-
-
21
-
-
0035812694
-
Protein structure prediction and structural genomics
-
Baker D, Sali A (2001) Protein structure prediction and structural genomics. Science 294: 93-96.
-
(2001)
Science
, vol.294
, pp. 93-96
-
-
Baker, D.1
Sali, A.2
-
22
-
-
0033873929
-
Comparative protein structure modelling of genes and genomes
-
Martí-Renom MA, Stuart AC, Fiser A, Sanchez R, Melo F, et al. (2000) Comparative protein structure modelling of genes and genomes. Annu Rev Biophys Biomol Struct 29: 291-325.
-
(2000)
Annu Rev Biophys Biomol Struct
, vol.29
, pp. 291-325
-
-
Martí-Renom, M.A.1
Stuart, A.C.2
Fiser, A.3
Sanchez, R.4
Melo, F.5
-
23
-
-
0029988488
-
Structure of Bordetella pertussis virulence factor P.69 pertactin
-
Emsley P, Charles IG, Fairweather NF, Isaacs NW (1996) Structure of Bordetella pertussis virulence factor P.69 pertactin. Nature 381: 90-92.
-
(1996)
Nature
, vol.381
, pp. 90-92
-
-
Emsley, P.1
Charles, I.G.2
Fairweather, N.F.3
Isaacs, N.W.4
-
24
-
-
1842562406
-
The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel beta-roll
-
Nummelin H, Merckel MC, Leo JC, Lankinen H, Skurnik M, et al. (2004) The Yersinia adhesin YadA collagen-binding domain structure is a novel left-handed parallel beta-roll. EMBO J 23: 701-711.
-
(2004)
EMBO J
, vol.23
, pp. 701-711
-
-
Nummelin, H.1
Merckel, M.C.2
Leo, J.C.3
Lankinen, H.4
Skurnik, M.5
-
25
-
-
1942535748
-
Structural basis for host recognition by the Haemophilus influenzae Hia autotransporter
-
Yeo H, Cotter SE, Laarmann S, Juehne T, St. Geme JW 3rd, et al. (2004) Structural basis for host recognition by the Haemophilus influenzae Hia autotransporter. EMBO J 23: 1245-1256.
-
(2004)
EMBO J
, vol.23
, pp. 1245-1256
-
-
Yeo, H.1
Cotter, S.E.2
Laarmann, S.3
Juehne, T.4
St. Geme 3rd, J.W.5
-
26
-
-
50849095177
-
-
Szczesny P, Linke D, Ursinus A, Bär K, Schwarz H, et al. (2008) Structure of the head of the Bartonella adhesin BadA. PLoS Pathogens 4: e1000119.
-
Szczesny P, Linke D, Ursinus A, Bär K, Schwarz H, et al. (2008) Structure of the head of the Bartonella adhesin BadA. PLoS Pathogens 4: e1000119.
-
-
-
-
27
-
-
20444435483
-
Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli
-
Otto BR, Sijbrandi R, Luirink J, Oudega B, Heddle JG, et al. (2005) Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli. J Biol Chem 280: 17339-17345.
-
(2005)
J Biol Chem
, vol.280
, pp. 17339-17345
-
-
Otto, B.R.1
Sijbrandi, R.2
Luirink, J.3
Oudega, B.4
Heddle, J.G.5
-
28
-
-
34547574147
-
M4T: A comparative protein structure modelling server
-
Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A (2007) M4T: a comparative protein structure modelling server. Nucleic Acids Res 35: W363-368.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Fernandez-Fuentes, N.1
Madrid-Aliste, C.J.2
Rai, B.K.3
Fajardo, J.E.4
Fiser, A.5
-
29
-
-
0141891157
-
Structure-function analysis of the enteroaggregative Escherichia coli plasmid-encoded toxin autotransporter using scanning linker mutagenesis
-
Dutta PR, Sui BQ, Nataro JP (2003) Structure-function analysis of the enteroaggregative Escherichia coli plasmid-encoded toxin autotransporter using scanning linker mutagenesis. J Biol Chem 278: 39912-39920.
-
(2003)
J Biol Chem
, vol.278
, pp. 39912-39920
-
-
Dutta, P.R.1
Sui, B.Q.2
Nataro, J.P.3
-
30
-
-
0037338681
-
A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain
-
Oliver DC, Huang G, Nodel E, Pleasance S, Fernandez RC (2003) A conserved region within the Bordetella pertussis autotransporter BrkA is necessary for folding of its passenger domain. Mol Microbiol 47: 1367-1383.
-
(2003)
Mol Microbiol
, vol.47
, pp. 1367-1383
-
-
Oliver, D.C.1
Huang, G.2
Nodel, E.3
Pleasance, S.4
Fernandez, R.C.5
-
31
-
-
0028670436
-
Involvement of the COOH-terminal pro-sequence of Serratia marcescens serine protease in the folding of the mature enzyme
-
Ohnishi Y, Nishiyama M, Horinouchi S, Beppu T (1994) Involvement of the COOH-terminal pro-sequence of Serratia marcescens serine protease in the folding of the mature enzyme. J Biol Chem 269: 32800-32806.
-
(1994)
J Biol Chem
, vol.269
, pp. 32800-32806
-
-
Ohnishi, Y.1
Nishiyama, M.2
Horinouchi, S.3
Beppu, T.4
-
32
-
-
3843078622
-
Hydrophobic residues of the autotransporter EspP linker domain are important for outer membrane translocation of its passenger
-
Velarde JJ, Nataro JP (2004) Hydrophobic residues of the autotransporter EspP linker domain are important for outer membrane translocation of its passenger. J Biol Chem 279: 31495-31504.
-
(2004)
J Biol Chem
, vol.279
, pp. 31495-31504
-
-
Velarde, J.J.1
Nataro, J.P.2
-
33
-
-
33847000902
-
Limited tolerance towards folded elements during secretion of the autotransporter Hbp
-
Jong WSP, ten Hagen-Jongman CM, den Blaauwen T, Slotboom DJ, Tame JRH, et al. (2007) Limited tolerance towards folded elements during secretion of the autotransporter Hbp. Mol Microbiol 63: 1524-1536.
-
(2007)
Mol Microbiol
, vol.63
, pp. 1524-1536
-
-
Jong, W.S.P.1
ten Hagen-Jongman, C.M.2
den Blaauwen, T.3
Slotboom, D.J.4
Tame, J.R.H.5
-
34
-
-
27944445725
-
Efficient secretion of a folded protein domain by a monomeric bacterial autotransporter
-
Skillman KM, Barnard TJ, Peterson JH, Ghirlando R, Bernstein HD (2005) Efficient secretion of a folded protein domain by a monomeric bacterial autotransporter. Mol Microbiol 58: 945-958.
-
(2005)
Mol Microbiol
, vol.58
, pp. 945-958
-
-
Skillman, K.M.1
Barnard, T.J.2
Peterson, J.H.3
Ghirlando, R.4
Bernstein, H.D.5
-
35
-
-
0037428132
-
Role of a highly conserved bacterial protein in outer membrane protein assembly
-
Voulhoux R, Bos MP, Geurtsen J, Mols M, Tommassen J (2003) Role of a highly conserved bacterial protein in outer membrane protein assembly. Science 299: 262-265.
-
(2003)
Science
, vol.299
, pp. 262-265
-
-
Voulhoux, R.1
Bos, M.P.2
Geurtsen, J.3
Mols, M.4
Tommassen, J.5
-
36
-
-
34548139422
-
Structure and function of an essential component of the outer membrane protein assembly machine
-
Kim S, Malinverni JC, Sliz P, Silhavy TJ, Harrison SC, et al. (2007) Structure and function of an essential component of the outer membrane protein assembly machine. Science 317: 961-964.
-
(2007)
Science
, vol.317
, pp. 961-964
-
-
Kim, S.1
Malinverni, J.C.2
Sliz, P.3
Silhavy, T.J.4
Harrison, S.C.5
-
37
-
-
35648988968
-
Are bacterial 'autotransporters' really transporters?
-
Bernstein HD (2007) Are bacterial 'autotransporters' really transporters? Trends Microbiol 15: 441-447.
-
(2007)
Trends Microbiol
, vol.15
, pp. 441-447
-
-
Bernstein, H.D.1
-
38
-
-
33751056360
-
Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif
-
Robert V, Volokhina EB, Senf F, Bos MP, van Gelder P, et al. (2006) Assembly factor Omp85 recognizes its outer membrane protein substrates by a species-specific C-terminal motif. PLoS Biol 4: e377.
-
(2006)
PLoS Biol
, vol.4
-
-
Robert, V.1
Volokhina, E.B.2
Senf, F.3
Bos, M.P.4
van Gelder, P.5
-
39
-
-
0027136213
-
Characterization of the Neisseria Iga beta-core. The essential unit for outer membrane targeting and extracellular protein secretion
-
Klauser T, Kramer J, Otzelberger K, Pohlner J, Meyer TF (1993) Characterization of the Neisseria Iga beta-core. The essential unit for outer membrane targeting and extracellular protein secretion. J Mol Biol 234: 579-593.
-
(1993)
J Mol Biol
, vol.234
, pp. 579-593
-
-
Klauser, T.1
Kramer, J.2
Otzelberger, K.3
Pohlner, J.4
Meyer, T.F.5
-
40
-
-
0032698497
-
Characterization of the essential transport function of the AIDA-I autotransporter and evidence supporting structural predictions
-
Maurer J, Jose J, Meyer TF (1999) Characterization of the essential transport function of the AIDA-I autotransporter and evidence supporting structural predictions. J Bacteriol 181: 14-20.
-
(1999)
J Bacteriol
, vol.181
, pp. 14-20
-
-
Maurer, J.1
Jose, J.2
Meyer, T.F.3
-
41
-
-
0036240798
-
Putting the β-breaks on membrane protein misfolding
-
Deber CM, Therien AG (2002) Putting the β-breaks on membrane protein misfolding. Nat Struct Biol 9: 318-319.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 318-319
-
-
Deber, C.M.1
Therien, A.G.2
-
42
-
-
0017868338
-
Empirical predictions of Protein conformation
-
Chou PY, Fasman GD (1978) Empirical predictions of Protein conformation. Annu Rev Biochem 47: 251-276.
-
(1978)
Annu Rev Biochem
, vol.47
, pp. 251-276
-
-
Chou, P.Y.1
Fasman, G.D.2
-
43
-
-
34548128883
-
Structure of the membrane protein FhaC: A member of the Omp85-TpsB transporter superfamily
-
Clantin B, Delattre A, Rucktooa P, Saint N, Meli AC, et al. (2007) Structure of the membrane protein FhaC: a member of the Omp85-TpsB transporter superfamily. Science 317: 957-961.
-
(2007)
Science
, vol.317
, pp. 957-961
-
-
Clantin, B.1
Delattre, A.2
Rucktooa, P.3
Saint, N.4
Meli, A.C.5
-
45
-
-
0347383758
-
Modeller: Generation and refinement of homology-based protein structure models
-
Fiser A, Sali A (2003) Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol 374: 461-491.
-
(2003)
Methods Enzymol
, vol.374
, pp. 461-491
-
-
Fiser, A.1
Sali, A.2
-
46
-
-
0031844794
-
Pet, an autotransporter enterotoxin from enteroaggregative Escherichia coli
-
Eslava C, Navarro-Garcia F, Czeczulin JR, Henderson IR, Cravioto A, et al. (1998) Pet, an autotransporter enterotoxin from enteroaggregative Escherichia coli. Inf Immun 66: 3155-3163.
-
(1998)
Inf Immun
, vol.66
, pp. 3155-3163
-
-
Eslava, C.1
Navarro-Garcia, F.2
Czeczulin, J.R.3
Henderson, I.R.4
Cravioto, A.5
-
47
-
-
0032540222
-
Assessing protein structures with a non-local atomic interaction energy
-
Melo F, Feytmans E (1998) Assessing protein structures with a non-local atomic interaction energy. J Mol Biol 277: 1141-1152.
-
(1998)
J Mol Biol
, vol.277
, pp. 1141-1152
-
-
Melo, F.1
Feytmans, E.2
-
48
-
-
0027490731
-
Recognition of errors in three-dimensional structures of proteins
-
Sippl MJ (1993) Recognition of errors in three-dimensional structures of proteins. Proteins 17: 355-362.
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
49
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss D, Thornton JM (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26: 283-291.
-
(1993)
J Appl Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.3
Thornton, J.M.4
-
50
-
-
40549141792
-
QMEAN: A comprehensive scoring function for model quality assessment
-
Benkert P, Tosatto SCE, Schomburg D (2008) QMEAN: A comprehensive scoring function for model quality assessment. Proteins 71: 261-277.
-
(2008)
Proteins
, vol.71
, pp. 261-277
-
-
Benkert, P.1
Tosatto, S.C.E.2
Schomburg, D.3
|