Erratum: Genomic approaches for designing durum wheat ready for climate change with a focus on drought (Journal of Experimental Botany (2009) 60 (2805-2815) DOI: 10.1093/jxb/erp211);Genomic approaches for designing durum wheat ready for climate change with a focus on drought

Journal of Experimental Botany

Volumn 60, Issue 10, 2009, Pages 2805-2815

  Habash, D Z ^a   Kehel, Z ^b   Nachit, M ^b  

^a ROTHAMSTED RESEARCH   (United Kingdom)

^b INTERNATIONAL CENTER FOR AGRICULTURAL RESEARCH IN THE DRY AREAS ICARDA   (Syrian Arab Republic)

Author keywords

Breeding; Climate change; Durum wheat; Genetics; Genomics; Systems biology

Indexed keywords

TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 67650889584     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/erq024     Document Type: Erratum

References (81)

1. Alonso-Blanco C, Koornneef M. 2000. Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends in Plant Science 5, 22-29.
2. Araus J-L, Slafer G, Royo C, Serret MD. 2008. Breeding for yield potential and stress adaptation in cereals. Critical Reviews in Plant Sciences 27, 377-412.
3. Bates BC, Kundzewicz ZW, Wu S, Palutikof JP, eds. 2008. Climate change and water. Technical Paper of the Intergovernmental Panel on Climate Change. Geneva: IPCC Secretariat.
4. Belaid A, Nsarellah N, Laamari A, Nachit M, Amri A. 2005. Assessing the economic impact of durum wheat research in Morocco. Aleppo, Syria: International Centre for Agricultural Research in the Dry Areas (ICARDA).
5. Benfey PN, Mitchell-Olds T. 2008. From genotype to phenotype: systems biology meets natural variation. Science 320, 495-497.
6. Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN. 2003. A gene expression map of the Arabidopsis root. Science 302, 1956-1960.
7. Blanco A, Bellomo MP, Cenci A, et al. 1998. A genetic linkage map of durum wheat. Theoretical and Applied Genetics 97, 721-728.
8. Blum A. 2005. Drought resistance, water-use efficiency, and yield potential- are they compatible, dissonant, or mutually exclusive? Australian Journal of Agricultural Research 56, 1159-1168.
9. Bohnert HJ, Gong Q, Li P, Ma S. 2006. Unravelling abiotic stress tolerance mechanisms-getting genomics going. Current Opinion in Plant Biology 9, 180-188.
10. Ceccarelli S. 1994. Specific adaptation and breeding for marginal conditions. Euphytica 77, 205-219.
11. Ceccarelli S, Grando S. 1996. Drought as a challenge for the plant breeder. Plant Growth Regulation 20, 149-155.
12. Chapman SC, Hammer GL, Podlich DW, Cooper M. 2002. Linking biophysical and genetic models to integrate physiology, molecular biology and plant breeding. In: Kang MS, ed. Quantitative genetics, genomics and plant breeding. Wallingford, UK: CABI Publishing, 167-187.
13. Collins NC, Tardieu F, Tuberosa R. 2008. Quantitative trait loci and crop performance under abiotic stress: where do we stand? Plant Physiology 147, 469-486.
14. Cooper M, Podlich DW, Micaleff KP, Smith OS, Jensen NM, Chapman SC, Kruger NL. 2002. Complexity, quantitative traits and plant breeding: a role for simulation modelling in the genetic improvements of crops. In: Kang MS, ed. Quantitative genetics, genomics and plant breeding. Wallingford, UK: CABI Publishing, 143-166.
15. Devos KM, Gale MD. 2000. Genome relationships: the grass model in current research. The Plant Cell 12, 637-646.
16. Diab AA, Kantety RV, Ozturk NZ, Benscher D, Nachit MM, Sorrells ME. 2008. Drought-inducible genes and differentially expressed sequence tags associated with components of drought tolerance in durum wheat. Scientific Research and Essay 3, 9-26.
17. Dinneny JR, Long TA, Wang JY, Jung JW, Mace D, Pointer S, Barron C, Brady SM, Schiefelbein J, Benfey PN. 2008. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science 320, 942-945.
18. Donini P, Law JR, Koebner RMD, Reeves JC, Cooke RJ. 2000. Temporal trends in the diversity of UK wheat. Theoretical and Applied Genetics 100, 912-917.
19. Eid J, Fehr A, Gray J, et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323, 133-138.
20. Elias EM, Manthey FA. 2005. End products: present and future uses. In: Royo C, Nachit MM, Di Fonzo N, Araus JL, Pfeiffer WH, Slafer GA, eds. Durum wheat breeding: current approaches and future strategies, Vol. 1. New York, London, Oxford: Food Products Press, an Imprint of The Haworth Press Inc, 63-85.
21. Elouafi I, Nachit MM. 2004. A genetic linkage map of the durum × Triturn dicoccoides backcross population based on SSRs and AFLP markers, and QTL analysis for milling traits. Theoretical and Applied Genetics 108, 401-413.
22. Ferrise R, Moriondo M, Bindi M. 2009. Climate change and projected impacts in agriculture: an example on Mediterranean crops. Geophysical Research Abstracts 11, EGU2009-7229.
23. Feuillet C, Keller B. 2002. Comparative genomics in the grass family: molecular characterization of grass genome structure and evolution. Annals of Botany 89, 3-10.
24. Ganal MW, Roder MS. 2007. Microsatellite and SNP markers in wheat breeding, Vol. 2. In: Varshney RK, Tuberosa R, eds. Genomic assisted crop improvement: genomics applications in crops. The Netherlands: Springer, 1-24.
25. IPCC. 2007. Climate change 2007: the physical science basis. In: Solomon S, Qin D, Manning M, Chen Z, Marquis M, Averyt KB, Tignor M, Miller HL, eds. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge, UK, New York, USA: Cambridge University Press.
26. Jansen RC, Nap JP. 2001. Genetical genomics: the added value from segregation. Trends in Genetics 17, 388-391.
27. Jansen RC, Tesson BM, Fu J, Yang Y, McIntyre M. 2009. Defining gene and QTL networks. Current Opinion in Plant Biology 12, 241-246.
28. Jordan MC, Somers DJ, Banks TW. 2007. Identifying regions of the wheat genome controlling seed development by mapping expression quantitative trait loci. Plant Biotechnology Journal 5, 442-453.
29. Kearsey MJ. 2002. QTL analysis: problems and (possible) solutions. In: Kang MS, ed. Quantitative genetics, genomics and plant breeding. Wallingford, UK: CABI Publishing, 45-58.
30. Key JM. 2005. Wheat: its concept, evolution, and taxonomy. In: Royo C, Nachit MM, Di Fonzo N, Araus JL, Pfeiffer WH, Slafer GA, eds. Durum wheat breeding: current approaches and future strategies, Vol. 1. New York, London, Oxford: Food Products Press, an imprint of the Haworth Press Inc, 3-61.
31. Kitano H. 2002. Systems biology: a brief overview. Science 295, 1662-1664.
32. Kuchel H, Williams K, Langridge P, Eagles HA, JeVeries SP. 2007. Genetic dissection of grain yield in bread wheat. II. QTL-by-environment interaction. Theoretical and Applied Genetics 115, 1015-1027.
33. Levitt J. 1972. Responses of plants to environmental stresses. New York: Academic Press.
34. Maccaferri M, Sanguineti MC, Corneti S, et al. 2008. Quantitative Trait Loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178, 489-511.
35. Maccaferri M, Sanguineti MC, Natoli V, et al. 2006. A panel of elite accessions of durum wheat (Triticum durum Desf.) suitable for association mapping studies. Plant Genetic Resources 4, 79-85.
36. Maccaferri M, Sanguineti MC, Noli E, Tuberosa R. 2005. Population structure and long-range linkage disequilibrium in a durum wheat elite collection. Molecular Breeding 15, 271-289.
37. Matthews DE, Lazo GR, Carollo VL, Anderson OD. 2004. Bioinformatics and triticeae genomics: resources and future developments. In: Gupta PK, Varshney RK, eds. Cereal genomics. The Netherlands: Kluwer Academic Publishers, 425-446.
38. Mitchell RAC, Castells-Brooke N, Taubert J, Verrier PJ, Leader DJ, Rawlings CJ. 2007. Wheat estimated transcript server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. Nucleic Acids Research 35, W148-W151.
39. Nachit MM. 1998b. Durum breeding research to improve dry-land productivity in the Mediterranean region. In: Rao SC, Ryan J, et al. eds. SEWANA durum research network. ICARDA editions, 1-15.
40. Nachit MM. 1998b. Association of grain yield in dryland and carbon isotope discrimination with molecular markers in durum (Triticum turgidum L. var. durum). Proceedings of the 9th international wheat genetics symposium. Saskatoon, Saskatchewan, Canada, 218-223.
41. Nachit MM, Baum M, Autrique E, Sorrells ME, Ali Dib T, Monneveux P. 1993. Association of morphophysiological traits with RFLP markers in durum wheat. In: Monneveux P, Salem M Ben, eds. Tolerance a la secheresse des cereales en zone mediterraneenne. Diversite genetique et amelioration varietale. Montpellier, France, 15-17 December 1992, 159-171.
42. Nachit MM, Elouafi I. 2004. Durum adaptation in the Mediterranean dryland: breeding, stress physiology, and molecular markers. In: Rao SC, Ryan J, eds. Challenges and strategies for dryland agriculture. CSSA Special Publication 32. Madison, Wisconsin, USA: Crop Science Society of America Inc., American Society of Agronomy Inc, 203-218.
43. Nachit MM, Elouafi I, Pagnotta MA, et al. 2001. Molecular linkage map for an intraspecific recombinant inbred population of durum wheat (Triticum turgidum L. var. durum). Theoretical and Applied Genetics 102, 177-186.
44. Nachit MM, Nachit G, Ketata H, Gauch HG, Zobel RW. 1992. Use of AMMI and linear regression models to analyze genotype-by-environment interaction in durum wheat. Theoretical and Applied Genetics 83, 597-601.
45. Nelson DE, Repetti PP, Adams TR, et al. 2007. Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres. Proceedings of the National Academy of Sciences, USA 104, 16450-16455.
46. Nsarellah N, Nachit M, Lhaloui S. 2000. Breeding durum wheat for biotic stresses in the Mediterranean region. CIHEAM publications-Options Mediterraneennes.
47. Oltvai ZN, Barabasi A.-L. 2002. Life's complexity pyramid. Science 298, 763-764.
48. Parry M, Rozenzweig C, Livermore M. 2005. Climate change, global food supply and risk of hunger. Philosophical Transactions of the Royal Society B-Biological Sciences 360, 2125-2138.
49. Paux E, Sourdille P, Salse J, et al. 2008. A physical map of the 1-gigabase bread wheat chromosome 3B. Science 322, 101-104.
50. Pettersson E, Lundeberg J, Ahmadian A. 2009. Generations of sequencing technologies. Genomics 93, 105-111.
51. Plaut Z, Butow BJ, Blumenthal CS, Wrigley CW. 2004. Transport of dry matter into developing wheat kernels and its contribution to grain yield under post-anthesis water deficit and elevated temperature. Field Crops Research 86, 185-298.
52. Podlich DW, Cooper M. 1998. QU-GENE: a simulation platform for quantitative analysis of genetic models. Bioinformatics 14, 632-653.
53. Reymond M, Muller B, Leonardi A, Charcosset A, Tardieu F. 2003. Combining quantitative trait loci analysis and an ecophysiolog-ical model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit. Plant Physiology 131, 664-675.
54. Reynolds MP, Borlaug NE. 2006. Impacts of breeding on international collaborative. Wheat improvement. Journal of Agricultural Science 144, 3-17.
55. Reynolds MP, Tuberosa R. 2008. Translational research impacting on crop productivity in drought-prone environments. Current Opinion in Plant Biology 11, 171-179.
56. Richards RA, Rebetzke GJ, Condon AG, van Herwaarden AF. 2002. Breeding opportunities for increasing the efficiency of water use and crop yield in temperate cereals. Crop Science 42, 111-121.
57. Roder MS, Huang XQ, Ganal MW. 2004. Wheat microsatellites in plant breeding: potential and implications. In: Loerz H, Wenzel G, eds. Molecular markers in plant breeding. Heidelberg: Springer-Verlag, 255-266.
58. Roderick ML, Hobbins MT, Farquhar GD. 2009. Pan evaporation trends and the terrestrial water balance. I. Principles and observations. Geography Compass 3/2, 746-760.
59. Rozensweig C, Parry M. 1994. Potential impact of climate change on world food supply. Nature 367, 133-138.
60. Salse J, Feuillet C. 2007. Comparative genomics of cereals. In: Varshney RK, Tuberosa R, eds. Genomic assisted crop improvement: genomics approaches and platforms, Vol. 1. The Netherlands: Springer, 177-205.
61. Salvi S, Tuberosa R. 2007. Cloning QTLs in plants. In: Varshney RK, Tuberosa R, eds. Genomic assisted crop improvement: genomics approaches and platforms, Vol. 1. The Netherlands: Springer, 207-225.
62. Sanchez AC, Subudhi PK, Rosenow DT, Nguyen HT. 2002. Mapping of QTLs associated with drought resistance in sorghum (Sorghum bicolor L. Moench). Plant Molecular Biology 48, 713-726.
63. Scheiermeier Q. 2008. A long dry summer. Nature 452, 270-273.
64. Semenov MA, Halford NG. 2009. Identifying target traits and molecular mecganisms for wheat breeding under a changing climate. Journal of Experimental Botany 60, 2791-2804.
65. Service RF. 2006. Gene sequencing. The race for the $1000 genome. Science 311, 1544-1546.
66. Shinozaki K, Yamaguchi-Shinozaki K, Seki M. 2003. Regulatory network of gene expression in the drought and cold stress responses. Current Opinion in Plant Biology 6, 410-417.
67. Slafer GA, Araus J-L, Royo C, Del Moral LFG. 2005. Promising ecophysiological traits for genetic improvement of cereals in Mediterranean environments. Annals of Applied Biology 146, 61-70.
68. Sreenivasulu N, Varshney RK, Kishor K, Weschke W. 2004. Functional genomics for tolerance to abiotic stress in cereals. In: Gupta PK, Varshney RK, eds. Cereal genomics. The Netherlands: Kluwer Academic Publishers, 483-514.
69. Talame V, Ozturk NZ, Bohnert HJ, Tuberosa R. 2007. Barley transcript profiles under dehydration shock and drought stress treatments: a comparative analysis. Journal of Experimental Botany 58, 229-240.
70. Valkoun J. 2001. Wheat pre-breeding using wild progenitors. Euphytica 119, 17-23.
71. Valliyodan B, Nguyen HT. 2006. Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Current Opinion in Plant Biology 9, 189-195.
72. Vargas M, Eeuwijk FA, Crossa J, Ribaut J.-M. 2006. Mapping QTLs and QTL × environment interaction for CIMMYT maize drought stress program using factorial regression and partial least squares methods. Theoretical and Applied Genetics 112, 1009-1023.
73. Varshney RK, Balyan HS, Langridge P. 2006. Wheat. In: Kole C, ed. Genome mapping and molecular breeding in plants, Vol. 1. Cereals and millet. Berlin: Springer, 79-134.
74. Varshney RK, Graner A, Sorrell AE. 2005. Genic microsatellite markers in plants: features and applications. Trends in Biotechnology 23, 48-55.
75. Varshney RK, Mahender T, Aggarwal RK, Börner A. 2007. Genetic molecular markers in plants: development and applications. In: Varshney RK, Tuberosa R, eds. Genomic assisted crop improvement: genomics approaches and platforms, Vol. 1. The Netherlands: Springer, 13-30.
76. Vinocur B, Altman A. 2005. Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Current Opinion in Biotechnology 16, 123-132.
77. Wall GW, Garcia RL, Kimball BA, et al. 2006. Interactive effects of elevated carbon dioxide and drought on wheat. Agronomy Journal 98, 354-381.
78. Yamaguchi-Shinozaki K, Shinozaki K. 2006. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annual Review of Plant Biology 57, 781-803.
79. Yan L, Loukoinov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J. 2003. Positional cloning of the wheat vernalization gene VRN1. Proceedings of the National Academy of Sciences, USA 100, 6263-6268.
80. Zhang JZ, Creelman RA, Zhu J.-K. 2004. From the laboratory to field. Using information from Arabidposis to engineer salt, cold, and drought tolerance in crops. Plant Physiology 135, 615-621.
81. Zhou J, Wang X, Jiao Y, et al. 2007. Global genome expression analysis of rice in response to drought and high-salinity stresses in shoot, flag leaf, and panicle. Plant Molecular Biology 63, 591-608.