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Volumn 8, Issue 6, 2009, Pages 1219-1235

Enhancing identifications of lipid-embedded proteins by mass spectrometry for improved mapping of endothelial plasma membranes in vivo

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; LIPID; MEMBRANE PROTEIN; PEPTIDE; PROTEIN; TRYPSIN;

EID: 67650567049     PISSN: 15359476     EISSN: None     Source Type: Journal    
DOI: 10.1074/mcp.M800215-MCP200     Document Type: Article
Times cited : (30)

References (47)
  • 1
    • 34548394602 scopus 로고    scopus 로고
    • Mammalian plasma membrane proteomics
    • DOI 10.1002/pmic.200700139
    • Josic, D., and Clifton, J. G. (2007) Mammalian plasma membrane proteom- ics. Proteomics 7, 3010-3029 (Pubitemid 47359936)
    • (2007) Proteomics , vol.7 , Issue.16 , pp. 3010-3029
    • Josic, D.1    Clifton, J.G.2
  • 2
    • 31644438577 scopus 로고    scopus 로고
    • Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT)
    • DOI 10.1074/mcp.T500013-MCP200
    • Chen, E. I., Hewel, J., Felding-Habermann, B., and Yates, J. R., III (2006) Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT). Mol. Cell. Proteomics 5, 53-56 (Pubitemid 43169340)
    • (2006) Molecular and Cellular Proteomics , vol.5 , Issue.1 , pp. 53-56
    • Chen, E.I.1    Hewel, J.2    Felding-Habermann, B.3    Yates III, J.R.4
  • 3
    • 33846929680 scopus 로고    scopus 로고
    • Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach
    • Koch, H. B., Zhang, R., Verdoodt, B., Bailey, A., Zhang, C. D., Yates, J. R., III, Menssen, A., and Hermeking, H. (2007) Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach. Cell Cycle 6, 205-217 (Pubitemid 46232502)
    • (2007) Cell Cycle , vol.6 , Issue.2 , pp. 205-217
    • Koch, H.B.1    Zhang, R.2    Verdoodt, B.3    Bailey, A.4    Zhang, C.-D.5    Yates III, J.R.6    Menssen, A.7    Hermeking, H.8
  • 4
    • 27144506540 scopus 로고    scopus 로고
    • Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS
    • Wang, Y., Rudnick, P. A., Evans, E. L., Li, J., Zhuang, Z., Devoe, D. L., Lee, C. S., and Balgley, B. M. (2005) Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS. Anal. Chem. 77, 6549-6556
    • (2005) Anal. Chem. , vol.77 , pp. 6549-6556
    • Wang, Y.1    Rudnick, P.A.2    Evans, E.L.3    Li, J.4    Zhuang, Z.5    Devoe, D.L.6    Lee, C.S.7    Balgley, B.M.8
  • 5
    • 23944486704 scopus 로고    scopus 로고
    • Two-dimensional liquid chromatography/tandem mass spectrometry analysis of Gradiflow™ fractionated native human plasma
    • DOI 10.1002/pmic.200401160
    • Wasinger, V. C., Locke, V. L., Raftery, M. J., Larance, M., Rothemund, D., Liew, A., Bate, I., and Guilhaus, M. (2005) Two-dimensional liquid chromatography/tandem mass spectrometry analysis of Gradiflow fractionated native human plasma. Proteomics 5, 3397-3401 (Pubitemid 41192045)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3397-3401
    • Wasinger, V.C.1    Locke, V.L.2    Raftery, M.J.3    Larance, M.4    Rothemund, D.5    Liew, A.6    Bate, I.7    Guilhaus, M.8
  • 6
    • 0344407503 scopus 로고    scopus 로고
    • Rapid analysis of tryptically digested cerebrospinal fluid using capillary electrophoresis-electrospray ionization-fourier transform ion cyclotron resonance-mass spectrometry
    • DOI 10.1021/pr025526s
    • Wetterhall, M., Palmblad, M., Hakansson, P., Markides, K. E., and Bergquist, J. (2002) Rapid analysis of tryptically digested cerebrospinal fluid using capillary electrophoresis-electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry. J. Proteome Res. 1, 361-366 (Pubitemid 36395877)
    • (2002) Journal of Proteome Research , vol.1 , Issue.4 , pp. 361-366
    • Wetterhall, M.1    Palmblad, M.2    Hakansson, P.3    Markides, K.E.4    Bergquist, J.5
  • 7
    • 20044372385 scopus 로고    scopus 로고
    • Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing
    • DOI 10.1002/pmic.200401103
    • Breci, L., Hattrup, E., Keeler, M., Letarte, J., Johnson, R., and Haynes, P. A. (2005) Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing. Proteomics 5, 2018-2028 (Pubitemid 40770566)
    • (2005) Proteomics , vol.5 , Issue.8 , pp. 2018-2028
    • Breci, L.1    Hattrup, E.2    Keeler, M.3    Letarte, J.4    Johnson, R.5    Haynes, P.A.6
  • 8
    • 33745966435 scopus 로고    scopus 로고
    • Large-scale identification of cytosolic mouse brain proteins by chromatographic prefractionation
    • DOI 10.1002/elps.200500804
    • Shin, J. H., Krapfenbauer, K., and Lubec, G. (2006) Large-scale identification of cytosolic mouse brain proteins by chromatographic prefractionation. Electrophoresis 27, 2799-2813 (Pubitemid 44057528)
    • (2006) Electrophoresis , vol.27 , Issue.13 , pp. 2799-2813
    • Shin, J.-H.1    Krapfenbauer, K.2    Lubec, G.3
  • 9
    • 23944434470 scopus 로고    scopus 로고
    • A novel four-dimensional strategy combining protein and peptide separation methods enables detection of low-abundance proteins in human plasma and serum proteomes
    • DOI 10.1002/pmic.200401275
    • Tang, H. Y., Ali-Khan, N., Echan, L. A., Levenkova, N., Rux, J. J., and Speicher, D. W. (2005) A novel four-dimensional strategy combining protein and peptide separation methods enables detection of low-abundance proteins in human plasma and serum proteomes. Proteomics 5, 3329-3342 (Pubitemid 41192039)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3329-3342
    • Tang, H.-Y.1    Ali-Khan, N.2    Echan, L.A.3    Levenkova, N.4    Rux, J.J.5    Speicher, D.W.6
  • 10
    • 0942276251 scopus 로고    scopus 로고
    • A detergent- And cyanogen bromide-free method for integral membrane proteomics: Application to Halobacterium purple membranes and the human epidermal membrane proteome
    • DOI 10.1002/pmic.200300543
    • Blonder, J., Conrads, T. P., Yu, L. R., Terunuma, A., Janini, G. M., Issaq, H. J., Vogel, J. C., and Veenstra, T. D. (2004) A detergent- and cyanogen bromide-free method for integral membrane proteomics: application to Halobacterium purple membranes and the human epidermal membrane proteome. Proteomics 4, 31-45 (Pubitemid 38140873)
    • (2004) Proteomics , vol.4 , Issue.1 , pp. 31-45
    • Blonder, J.1    Conrads, T.P.2    Yu, L.-R.3    Terunuma, A.4    Janini, G.M.5    Issaq, H.J.6    Vogel, J.C.7    Veenstra, T.D.8
  • 11
    • 33845585903 scopus 로고    scopus 로고
    • Analysis of the synaptic vesicle proteome using three gel-based protein separation techniques
    • DOI 10.1002/pmic.200600357
    • Burré, J., Beckhaus, T., Schägger, H., Corvey, C., Hofmann, S., Karas, M., Zimmermann, H., and Volknandt, W. (2006) Analysis of the synaptic vesicle proteome using three gel-based protein separation techniques. Proteomics 6, 6250-6262 (Pubitemid 44935512)
    • (2006) Proteomics , vol.6 , Issue.23 , pp. 6250-6262
    • Burre, J.1    Beckhaus, T.2    Schagger, H.3    Corvey, C.4    Hofmann, S.5    Karas, M.6    Zimmermann, H.7    Volknandt, W.8
  • 12
    • 33746414366 scopus 로고    scopus 로고
    • Proteomic analysis of rat hippocampal plasma membrane: Characterization of potential neuronal-specific plasma membrane proteins
    • DOI 10.1111/j.1471-4159.2006.03934.x
    • Chen, P., Li, X., Sun, Y., Liu, Z., Cao, R., He, Q., Wang, M., Xiong, J., Xie, J., Wang, X., and Liang, S. (2006) Proteomic analysis of rat hippocampal plasma membrane: characterization of potential neuronal-specific plasma membrane proteins. J. Neurochem. 98, 1126-1140 (Pubitemid 44127788)
    • (2006) Journal of Neurochemistry , vol.98 , Issue.4 , pp. 1126-1140
    • Chen, P.1    Li, X.2    Sun, Y.3    Liu, Z.4    Cao, R.5    He, Q.6    Wang, M.7    Xiong, J.8    Xie, J.9    Wang, X.10    Liang, S.11
  • 13
    • 5644302164 scopus 로고    scopus 로고
    • The synaptic vesicle proteome: A comparative study in membrane protein identification
    • DOI 10.1002/pmic.200300817
    • Coughenour, H. D., Spaulding, R. S., and Thompson, C. M. (2004) The synaptic vesicle proteome: a comparative study in membrane protein identification. Proteomics 4, 3141-3155 (Pubitemid 39372396)
    • (2004) Proteomics , vol.4 , Issue.10 , pp. 3141-3155
    • Coughenour, H.D.1    Spaulding, R.S.2    Thompson, C.M.3
  • 14
    • 33745889633 scopus 로고    scopus 로고
    • Efficient and non-denaturing membrane solubilization combined with enrichment of membrane protein complexes by detergent/polymer aqueous two-phase partitioning for proteome analysis
    • DOI 10.1016/j.chroma.2006.04.020, PII S0021967306008442
    • Everberg, H., Leiding, T., Schioth, A., Tjerneld, F., and Gustavsson, N. (2006) Efficient and non-denaturing membrane solubilization combined with enrichment of membrane protein complexes by detergent/polymer aqueous two-phase partitioning for proteome analysis. J. Chromatogr. A 1122, 35-46 (Pubitemid 44041363)
    • (2006) Journal of Chromatography a , vol.1122 , Issue.1-2 , pp. 35-46
    • Everberg, H.1    Leiding, T.2    Schioth, A.3    Tjerneld, F.4    Gustavsson, N.5
  • 15
    • 10644239034 scopus 로고    scopus 로고
    • Utilization of a new biotinylation reagent in the development of a nondiscriminatory investigative approach for the study of cell surface proteins
    • DOI 10.1002/pmic.200300860
    • Gauthier, D. J., Gibbs, B. F., Rabah, N., and Lazure, C. (2004) Utilization of a new biotinylation reagent in the development of a nondiscriminatory investigative approach for the study of cell surface proteins. Proteomics 4, 3783-3790 (Pubitemid 39657456)
    • (2004) Proteomics , vol.4 , Issue.12 , pp. 3783-3790
    • Gauthier, D.J.1    Gibbs, B.F.2    Rabah, N.3    Lazure, C.4
  • 16
    • 0038607034 scopus 로고    scopus 로고
    • Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis
    • Ihling, C., Berger, K., Hofliger, M. M., Fuhrer, D., Beck-Sickinger, A. G., and Sinz, A. (2003) Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis. Rapid Commun. Mass Spectrom. 17, 1240-1246
    • (2003) Rapid Commun. Mass Spectrom. , vol.17 , pp. 1240-1246
    • Ihling, C.1    Berger, K.2    Hofliger, M.M.3    Fuhrer, D.4    Beck-Sickinger, A.G.5    Sinz, A.6
  • 17
    • 33746051332 scopus 로고    scopus 로고
    • Enrichment of integral membrane proteins from small amounts of brain tissue
    • DOI 10.1007/s00702-006-0508-4, Proteomics in neurodegeneration - from samples to target proteins and biomarkers
    • Schindler, J., Jung, S., Niedner-Schatteburg, G., Friauf, E., and Nothwang, H. G. (2006) Enrichment of integral membrane proteins from small amounts of brain tissue. J. Neural Transm. 113, 995-1013 (Pubitemid 44079934)
    • (2006) Journal of Neural Transmission , vol.113 , Issue.8 , pp. 995-1013
    • Schindler, J.1    Jung, S.2    Niedner-Schatteburg, G.3    Friauf, E.4    Nothwang, H.G.5
  • 18
  • 21
    • 0347134596 scopus 로고    scopus 로고
    • Affinity enrichment of plasma membrane for proteomics analysis
    • DOI 10.1002/elps.200305569
    • Zhang, W., Zhou, G., Zhao, Y., and White, M. A. (2003) Affinity enrichment of plasma membrane for proteomics analysis. Electrophoresis 24, 2855-2863 (Pubitemid 38089077)
    • (2003) Electrophoresis , vol.24 , Issue.16 , pp. 2855-2863
    • Zhang, W.1    Zhou, G.2    Zhao, Y.3    White, M.A.4    Zhao, Y.5
  • 22
    • 1842529218 scopus 로고    scopus 로고
    • Proteomic analysis of integral plasma membrane proteins
    • Zhao, Y., Zhang, W., Kho, Y., and Zhao, Y. (2004) Proteomic analysis of integral plasma membrane proteins. Anal. Chem. 76, 1817-1823
    • (2004) Anal. Chem. , vol.76 , pp. 1817-1823
    • Zhao, Y.1    Zhang, W.2    Kho, Y.3    Zhao, Y.4
  • 23
    • 0032514402 scopus 로고    scopus 로고
    • Vascular targeting as a strategy for cancer therapy
    • Schnitzer, J. E. (1998) Vascular targeting as a strategy for cancer therapy. N. Engl. J. Med. 339, 472-474
    • (1998) N. Engl. J. Med. , vol.339 , pp. 472-474
    • Schnitzer, J.E.1
  • 24
    • 2942529235 scopus 로고    scopus 로고
    • Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy
    • DOI 10.1038/nature02580
    • Oh, P., Li, Y., Yu, J., Durr, E., Krasinska, K. M., Carver, L. A., Testa, J. E., and Schnitzer, J. E. (2004) Sub-tractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy. Nature 429, 629-635 (Pubitemid 38812308)
    • (2004) Nature , vol.429 , Issue.6992 , pp. 629-635
    • Oh, P.1    Li, Y.2    Yu, J.3    Durr, E.4    Krasinska, K.M.5    Carver, L.A.6    Testa, J.E.7    Schnitzer, J.E.8
  • 26
  • 27
    • 0029082412 scopus 로고
    • Separation of caveolae from associated microdomains of GPI-anchored proteins
    • Schnitzer, J. E., McIntosh, D. P., Dvorak, A M., Liu, J., and Oh, P. (1995) Separation of caveolae from associated microdomains of GPI-anchored proteins. Science 269, 1435-1439
    • (1995) Science , vol.269 , pp. 1435-1439
    • Schnitzer, J.E.1    McIntosh, D.P.2    Dvorak, A.M.3    Liu, J.4    Oh, P.5
  • 28
    • 84884894459 scopus 로고    scopus 로고
    • Isolation and subfractionation of plasma membranes to purify caveolae separately from lipid rafts
    • Celis, J. E., ed 3rd Ed., Elsevier, Amsterdam
    • Oh, P., Caver, L., and Schnitzer, J. E. (2006) Isolation and subfractionation of plasma membranes to purify caveolae separately from lipid rafts, in Cell Biology: a Laboratory Handbook (Celis, J. E., ed) 3rd Ed., pp. 11-26, Elsevier, Amsterdam
    • (2006) Cell Biology: a Laboratory Handbook , pp. 11-26
    • Oh, P.1    Caver, L.2    Schnitzer, J.E.3
  • 30
    • 0030026070 scopus 로고    scopus 로고
    • Femtomole sequencing of proteins from polyacrylamide by nano-electrospray mass spectromtry
    • DOI 10.1038/379466a0
    • Wilm, M., Shevchenko, A., Houthaeve, T., Breit, S., Schweigerer, L., Fotsis, T., and Mann, M. (1996) Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry. Nature 379, 466-469 (Pubitemid 26039530)
    • (1996) Nature , vol.379 , Issue.6564 , pp. 466-469
    • Wilm, M.1    Shevchenko, A.2    Houthaeve, T.3    Breit, S.4    Schweigerer, L.5    Fotsis, T.6    Mann, M.7
  • 31
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M. P., Wolters, D., and Yates, J. R., III (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 32
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
    • Tabb, D. L., McDonald, W. H., and Yates, J. R., III (2002) DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-26
    • (2002) J. Proteome Res. , vol.1 , pp. 21-26
    • Tabb, D.L.1    McDonald, W.H.2    Yates III, J.R.3
  • 33
    • 0031954925 scopus 로고    scopus 로고
    • Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
    • Wallin, E., and von Heijne, G. (1998) Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7, 1029-1038 (Pubitemid 28216544)
    • (1998) Protein Science , vol.7 , Issue.4 , pp. 1029-1038
    • Wallin, E.1    Von Heijne, G.2
  • 34
    • 23944451618 scopus 로고    scopus 로고
    • An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: Sensitivity and specificity analysis
    • DOI 10.1002/pmic.200500126
    • Kapp, E. A., Schutz, F., Connolly, L. M., Chakel, J. A., Meza, J. E., Miller, C. A., Fenyo, D., Eng, J. K., Adkins, J. N., Omenn, G. S., and Simpson, R. J. (2005) An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis. Proteomics 5, 3475-3490 (Pubitemid 41192052)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3475-3490
    • Kapp, E.A.1    Schutz, F.2    Connolly, L.M.3    Chakel, J.A.4    Meza, J.E.5    Miller, C.A.6    Fenyo, D.7    Eng, J.K.8    Adkins, J.N.9    Omenn, G.S.10    Simpson, R.J.11
  • 35
    • 23944456877 scopus 로고    scopus 로고
    • Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO plasma proteome project
    • DOI 10.1002/pmic.200401226
    • Li, X., Gong, Y., Wang, Y., Wu, S., Cai, Y., He, P., Lu, Z., Ying, W., Zhang, Y., Jiao, L., He, H., Zhang, Z., He, F., Zhao, X., and Qian, X. (2005) Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project. Proteomics 5, 3423-3441 (Pubitemid 41192048)
    • (2005) Proteomics , vol.5 , Issue.13 , pp. 3423-3441
    • Li, X.1    Gong, Y.2    Wang, Y.3    Wu, S.4    Cai, Y.5    He, P.6    Lu, Z.7    Ying, W.8    Zhang, Y.9    Jiao, L.10    He, H.11    Zhang, Z.12    He, F.13    Zhao, X.14    Qian, X.15
  • 36
    • 1642398957 scopus 로고    scopus 로고
    • Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain
    • Stevens, S. M., Jr., Zharikova, A. D., and Prokai, L. (2003) Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain. Brain Res. Mol. Brain Res. 117, 116-128
    • (2003) Brain Res. Mol. Brain Res. , vol.117 , pp. 116-128
    • Stevens Jr., S.M.1    Zharikova, A.D.2    Prokai, L.3
  • 37
    • 34347234182 scopus 로고    scopus 로고
    • Shotgun analysis of integral membrane proteins facilitated by elevated temperature
    • Speers, A. E., Blackler, A. R., and Wu, C. C. (2007) Shotgun analysis of integral membrane proteins facilitated by elevated temperature. Anal. Chem. 79, 4613-4620
    • (2007) Anal. Chem. , vol.79 , pp. 4613-4620
    • Speers, A.E.1    Blackler, A.R.2    Wu, C.C.3
  • 43
    • 33645704767 scopus 로고    scopus 로고
    • Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver
    • Forner, F., Foster, L. J., Campanaro, S., Valle, G., and Mann, M. (2006) Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver. Mol. Cell. Proteomics 5, 608-619
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 608-619
    • Forner, F.1    Foster, L.J.2    Campanaro, S.3    Valle, G.4    Mann, M.5
  • 45
    • 33644841214 scopus 로고    scopus 로고
    • Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins
    • DOI 10.1021/pr050387a
    • Cao, R., Li, X., Liu, Z., Peng, X., Hu, W., Wang, X., Chen, P., Xie, J., and Liang, S. (2006) Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins. J. Proteome Res. 5, 634-642 (Pubitemid 43364104)
    • (2006) Journal of Proteome Research , vol.5 , Issue.3 , pp. 634-642
    • Cao, R.1    Li, X.2    Liu, Z.3    Peng, X.4    Hu, W.5    Wang, X.6    Chen, P.7    Xie, J.8    Liang, S.9
  • 47
    • 52949094993 scopus 로고    scopus 로고
    • Proteomics. Proteomics ponders prime time
    • Service, R. F. (2008) Proteomics. Proteomics ponders prime time. Science 321, 1758-1761
    • (2008) Science , vol.321 , pp. 1758-1761
    • Service, R.F.1


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