Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain

Molecular Brain Research

Volumn 117, Issue 2, 2003, Pages 116-128

  Stevens Jr , Stanley M ^a   Zharikova, Alevtina D ^a   Prokai, Laszlo ^a,b  

^a UNIVERSITY OF FLORIDA HEALTH   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Cellular and molecular biology; Gene structure and function: general; Mass spectrometry; Proteomics; Rat forebrain; Synaptic membrane

Indexed keywords

MEMBRANE PROTEIN; PEPTIDE;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CAPILLARY CHROMATOGRAPHY; CELL ISOLATION; CONTROLLED STUDY; DATA ANALYSIS; FOREBRAIN; ION EXCHANGE CHROMATOGRAPHY; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PHYSIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN DETERMINATION; PROTEOMICS; RAT; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; SEPARATION TECHNIQUE; SYNAPTIC MEMBRANE; TECHNIQUE;

ANIMALS; CELL MEMBRANE; CHROMATOGRAPHY, LIQUID; ELECTROPHORESIS, POLYACRYLAMIDE GEL; MALE; MASS SPECTROMETRY; MICROSCOPY, ELECTRON; PEPTIDE MAPPING; PROSENCEPHALON; PROTEINS; PROTEOMICS; RATS; RATS, SPRAGUE-DAWLEY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SYNAPSES; SYNAPTOSOMES; TIME FACTORS; TRYPSIN;

EID: 1642398957     PISSN: 0169328X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-328X(03)00282-1     Document Type: Article

References (37)

1. D. Arnott, A. Kishiyama, I. Mohtashemi, W. Sandoval, W.J. Henzel, J.T. Stults, Proteomics via multidimensional separations: which dimensions to use? Poster presented at the 50th ASMS Conference on Mass Spectrometry (2002) Orlando, FL.
2. Beranova-Giorgianni S., Pabst M.J., Russell T.M., Giorgianni F., Goldowitz D., Desiderio D.M. Preliminary analysis of the mouse cerebellum proteome. Mol. Brain Res. 98:2002;135-140.
3. Bickler P.E., Donohoe P.H., Buck L.T. Molecular adaptations for survival during anoxia: lessons from lower vertebrates. Neuroscientist. 8:2002;234-242.
4. Cascio M., Rapaka R.S. Structural biology and structural genomics/proteomics. J. Pept. Res. 60:2002;307-311.
5. Dancik V., Addona T.A., Clauser K.R., Vath J.E., Pevzner P.A. De novo peptide sequencing via tandem mass spectrometry. J. Comp. Biol. 6:1999;327-342.
6. Denore J.P., Qin J. Fragmentation of phosphopeptides in an ion trap mass spectrometer. J. Am. Soc. Mass Spectrom. 9:1998;1175-1188.
7. Evans G.J.O., Morgan A. Phosphorylation-dependent interaction of the synaptic vesicle proteins cysteine string protein and synaptotagmin I. Biochem. J. 364:2002;343-347.
8. Evans G.J.O., Wilkinson M.C., Graham M.E., Turner K.M., Chamberlain L.H., Burgoyne R.D., Morgan A. Phosphorylation of cysteine string protein by protein kinase A. J. Biol. Chem. 276:2001;47877-47885.
9. Fenn J.B., Mann M., Meng C.K., Wong S.F., Whitehouse C.M. Electrospray ionization for mass spectrometry of large biomolecules. Science. 246:1989;64-71.
10. Fountoulakis M., Schuller E., Hardmeier R., Berndt P., Lubec G. Rat brain proteins: two-dimensional protein database and variations in the expression level. Electrophoresis. 20:1999;3572-3579.
11. Fountoulakis M., Berndt P., Langen H., Suter L. The rat liver mitochondrial proteins. Electrophoresis. 23:2002;311-328.
12. Friso G., Wikstrom L. Analysis of proteins from membrane-enriched cerebellar preparations by two-dimensional gel electrophoresis and mass spectrometry. Electrophoresis. 20:1999;917-927.
13. Grant S.G.N., Blackstock W.P. Proteomics in neuroscience: from protein to network. J. Neurosci. 21:2001;8315-8318.
14. Hajos F. Improved method for preparation of synaptosomal fractions in high-purity. Brain Res. 93:1975;485-489.
15. Hanson P.I., Heuser J.E., Jahn R. Neurotransmitter release - 4 years of SNARE complexes. Curr. Opin. Neurobiol. 7:1997;310-315.
16. Hecker M., Engelmann S. Proteomics, DNA arrays and the analysis of still unknown regulons and unknown proteins of Bacillus subtilis and pathogenic Gram-positive bacteria. Int. J. Med. Microbiol. 290:2000;123-134.
17. Husi H., Ward M.A., Choudhary J.S., Blackstock W.P., Grant S.G.N. Proteomic analysis of NMDA receptor-adhesion protein signaling complexes. Nat. Neurosci. 3:2000;661-669.
18. Kanner B.I. Active-transport of γ-aminobutyric acid by membrane-vesicles isolated from rat-brain. Biochemistry. 17:1978;1207-1211.
19. Karas M., Hillenkamp F. Laser desorption of proteins with molecular masses exceeding 10 000 Daltons. Anal. Chem. 60:1988;2299-2301.
20. Kratzer R., Eckerskorn C., Karas M., Lottspeich F. Suppression effects in enzymatic peptide ladder sequencing using ultraviolet-matrix assisted laser desorption/ionization mass spectrometry. Electrophoresis. 19:1998;1910-1919.
21. Krause E., Wenschuh H., Jungblut P.R. The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins. Anal. Chem. 71:1999;4160-4165.
22. Liu H.B., Lin D.Y., Yates J.R. Multidimensional separations for protein/peptide analysis in the post-genomic era. Biotechniques. 32:2002;898. also see pp. 900, 902.
23. Medzihradszky K.F., Leffler H., Baldwin M.A., Burlingame A.L. Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques. J. Am. Soc. Mass Spectrom. 12:2001;215-221.
24. Palzkill T. Proteomics. 2002;1-33 Kluwer, Dordrecht.
25. Petukov V.V., Popov V.I. Quantitative analysis of ultrastructural changes in synapses of the rat hippocampal field CA3 in vitro in different functional states. Neuroscience. 18:1986;823-835.
26. Philips G.R., Huang J.K., Wang Y., Tanaka H., Shapiro L., Zhang W., Shan W., Arndt K., Frank M., Gordon R.E., Gawinowicz M.A., Zhao Y., Colman D.R. The presynaptic particle web: ultrastructure, composition, dissolution, and reconstitution. Neuron. 32:2001;63-77.
27. Prokai L., Zharikova A.D. Identification of synaptic metabolites of dynorphin A (1-8) by electrospray ionization and tandem mass spectrometry. Rapid Commun. Mass Spectrom. 12:1998;1796-1800.
28. Satoh K., Takeuchi M., Oda Y., Deguchi-Tawarada M., Sakamoto Y., Matsubara K., Nagasu T., Takai Y. Identification of activity-regulated proteins in the postsynaptic density fraction. Genes Cells. 7:2002;187-197.
29. Soltys B.J., Gupta R.S. Mitochondrial-matrix proteins at unexpected locations: are they exported? Trends Biochem. Sci. 24:1999;174-177.
30. Stevens S.M. Jr., Kem W.R., Prokai L. Investigation of cytolysin variants by peptide mapping: enhanced protein characterization using complementary ionization and mass spectrometric techniques. Rapid Commun. Mass Spectrom. 16:2002;2094-2101.
31. Tan S., Seow T.K., Liang R.C.M.Y., Koh S., Lee C.P.C., Chung M.C.M., Hooi S.C. Proteome analysis of butyrate-treated human colon cancer cells (HT-29). Int. J. Cancer. 98:2002;523-531.
32. Walikonis R.S., Jensen O.N., Mann M., Provance D.W. Jr., Mercer J.A., Kennedy M.B. Identification of proteins in the postsynaptic density fraction by mass spectrometry. J. Neurosci. 20:2000;4069-4080.
33. Wild G.C., Benzel E.C. Essentials of Neurochemistry. 1994;33-42 Jones and Bartlett, Boston.
34. Wolters D.A., Washburn M.P., Yates J.R. III. An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73:2001;5683-5690.
35. Yates J.R. III. Mass spectrometry: from genomics to proteomics. Trends Genet. 16:2000;5-8.
36. Yuan X.L., Russell T., Wood G. Analysis of the human lumbar cerebrospinal fluid proteome. Electrophoresis. 23:2002;1185-1196.
37. Zharikov S.I., Zharikova A.D., Popov V.I., Pashkov V.N., Grishin E.V. The effect of α-latrotoxin on the processes of glutamate uptake and release in rat brain synaptosomes. Biol. Membr. 7:1990;1013-1021.