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Volumn 63, Issue 15, 2006, Pages 1790-1804

Proteomic analysis of low-abundant integral plasma membrane proteins based on gels

Author keywords

Microdomain; Plasma membrane; Rat liver; SDS gel electrophoresis

Indexed keywords

ACTIN; ADENOSINE TRIPHOSPHATASE (POTASSIUM SODIUM); ALPHA ACTININ; ANTIPORTER; BICARBONATE; CADHERIN; CATENIN; CD81 ANTIGEN; CELL ADHESION MOLECULE; CHLOROFORM; CLAUDIN 3; CONNECTIN; DYNEIN ADENOSINE TRIPHOSPHATASE; FIBRONECTIN; GLUCOSE TRANSPORTER; GLUTAMATE RECEPTOR; HISTONE H2A; MALATE DEHYDROGENASE; MEMBRANE PROTEIN; METHANOL; MYOSIN HEAVY CHAIN; MYOSIN LIGHT CHAIN; PLECTIN; PROTEIN KINASE C; RIBOSOME PROTEIN; SPECTRIN; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR LUZP; TRITON X 100; TROPOMYOSIN; UNCLASSIFIED DRUG;

EID: 33747095455     PISSN: 1420682X     EISSN: 15691632     Source Type: Journal    
DOI: 10.1007/s00018-006-6126-3     Document Type: Article
Times cited : (39)

References (42)
  • 3
    • 2942529235 scopus 로고    scopus 로고
    • Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy
    • Oh, P., Li, Y., Yu, J., Durr, E., Krasinska, K. M., Carver, L. A., Testa, J. E. and Schnitzer, J. E. (2004) Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy. Nature. 429, 629-635.
    • (2004) Nature , vol.429 , pp. 629-635
    • Oh, P.1    Li, Y.2    Yu, J.3    Durr, E.4    Krasinska, K.M.5    Carver, L.A.6    Testa, J.E.7    Schnitzer, J.E.8
  • 4
    • 1642398957 scopus 로고    scopus 로고
    • Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain
    • Stevens, S. M. Jr, Zharikova, A. D. and Prokai, L. (2003) Proteomic analysis of the synaptic plasma membrane fraction isolated from rat forebrain. Brain Res. Mol. Brain Res. 117, 116-128.
    • (2003) Brain Res. Mol. Brain Res. , vol.117 , pp. 116-128
    • Stevens Jr., S.M.1    Zharikova, A.D.2    Prokai, L.3
  • 5
    • 0036364467 scopus 로고    scopus 로고
    • Multidrug resistance in cancer: Role of ATP-dependent transporters
    • Gottesman, M. M., Fojo, T. and Bates, S. E. (2002) Multidrug resistance in cancer: role of ATP-dependent transporters. Nat. Rev. Cancer 2, 48-58.
    • (2002) Nat. Rev. Cancer , vol.2 , pp. 48-58
    • Gottesman, M.M.1    Fojo, T.2    Bates, S.E.3
  • 6
    • 0036220498 scopus 로고    scopus 로고
    • Signal transduction systems and atrial fibrillation
    • Goette, A., Lendeckel, U. and Klein, H. U. (2002) Signal transduction systems and atrial fibrillation. Cardiovasc. Res. 54, 247-258.
    • (2002) Cardiovasc. Res. , vol.54 , pp. 247-258
    • Goette, A.1    Lendeckel, U.2    Klein, H.U.3
  • 7
    • 0032560586 scopus 로고    scopus 로고
    • Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae
    • Paulsen, I. T., Sliwinski, M. K., Nelissen, B., Goffeau, A. and Saier, M. H. Jr (1998) Unified inventory of established and putative transporters encoded within the complete genome of Saccharomyces cerevisiae. FEBS Lett. 430, 116-125.
    • (1998) FEBS Lett. , vol.430 , pp. 116-125
    • Paulsen, I.T.1    Sliwinski, M.K.2    Nelissen, B.3    Goffeau, A.4    Saier Jr., M.H.5
  • 10
    • 1042291979 scopus 로고    scopus 로고
    • Comparative proteomics of human endothelial cell caveolae and rafts using two-dimensional gel electrophoresis and mass spectrometry
    • Sprenger, R. R., Speijer, D., Back, J. W., De Koster, C. G., Pannekoek, H. and Horrevoets, A. J. (2004) Comparative proteomics of human endothelial cell caveolae and rafts using two-dimensional gel electrophoresis and mass spectrometry. Electrophoresis 25, 156-172.
    • (2004) Electrophoresis , vol.25 , pp. 156-172
    • Sprenger, R.R.1    Speijer, D.2    Back, J.W.3    De Koster, C.G.4    Pannekoek, H.5    Horrevoets, A.J.6
  • 11
    • 28444455281 scopus 로고    scopus 로고
    • Proteomic analysis of mouse liver plasma membrane: Use of differential extraction to enrich hydrophobic membrane proteins
    • Zhang, L., Xie, J., Wang, X., Liu, X., Tang, X., Cao, R., Hu, W., Nie, S., Fan, C. and Liang, S. (2005) Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics 5, 4510-4524.
    • (2005) Proteomics , vol.5 , pp. 4510-4524
    • Zhang, L.1    Xie, J.2    Wang, X.3    Liu, X.4    Tang, X.5    Cao, R.6    Hu, W.7    Nie, S.8    Fan, C.9    Liang, S.10
  • 12
    • 0036857488 scopus 로고    scopus 로고
    • Application of zwitterionic detergents to the solubilization of integral membrane proteins for two-dimensional gel electrophoresis and mass spectrometry
    • Henningsen, R., Gale, B. L., Straub, K. M. and DeNagel, D. C. (2002) Application of zwitterionic detergents to the solubilization of integral membrane proteins for two-dimensional gel electrophoresis and mass spectrometry. Proteomics 2, 1479-1488.
    • (2002) Proteomics , vol.2 , pp. 1479-1488
    • Henningsen, R.1    Gale, B.L.2    Straub, K.M.3    DeNagel, D.C.4
  • 13
    • 0033778077 scopus 로고    scopus 로고
    • Membrane proteomics: Use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties
    • Santoni, V., Kieffer, S., Desclaux, D., Masson, F. and Rabilloud, T. (2000) Membrane proteomics: use of additive main effects with multiplicative interaction model to classify plasma membrane proteins according to their solubility and electrophoretic properties. Electrophoresis 21, 3329-3344.
    • (2000) Electrophoresis , vol.21 , pp. 3329-3344
    • Santoni, V.1    Kieffer, S.2    Desclaux, D.3    Masson, F.4    Rabilloud, T.5
  • 14
    • 32144444737 scopus 로고    scopus 로고
    • Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland
    • Zhang, L., Liu, X., Zhang, J., Cao, R., Lin, Y., Xie, J., Chen, P., Sun, Y., Li, D. and Liang, S. (2006) Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland. Proteomics 6, 487-497.
    • (2006) Proteomics , vol.6 , pp. 487-497
    • Zhang, L.1    Liu, X.2    Zhang, J.3    Cao, R.4    Lin, Y.5    Xie, J.6    Chen, P.7    Sun, Y.8    Li, D.9    Liang, S.10
  • 15
    • 32144444737 scopus 로고    scopus 로고
    • Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland
    • Zhang, L., Liu, X., Zhang, J., Cao, R., Lin, Y., Xie, J., Chen, P., Sun, Y., Li, D. and Liang, S. (2006) Proteome analysis of combined effects of androgen and estrogen on the mouse mammary gland. Proteomics 6 (2), 487-497.
    • (2006) Proteomics , vol.6 , Issue.2 , pp. 487-497
    • Zhang, L.1    Liu, X.2    Zhang, J.3    Cao, R.4    Lin, Y.5    Xie, J.6    Chen, P.7    Sun, Y.8    Li, D.9    Liang, S.10
  • 16
    • 0035253337 scopus 로고    scopus 로고
    • Alpha-cyano-4-hydroxycinnamic acid affinity sample preparation: A protocol for MALDI-MS peptide analysis in proteomics
    • Gobom, J., Schuerenberg, M., Mueller, M., Theiss, D., Lehrach, H. and Nordhoff, E. (2001) Alpha-cyano-4-hydroxycinnamic acid affinity sample preparation: a protocol for MALDI-MS peptide analysis in proteomics. Anal. Chem. 73, 434-438.
    • (2001) Anal. Chem. , vol.73 , pp. 434-438
    • Gobom, J.1    Schuerenberg, M.2    Mueller, M.3    Theiss, D.4    Lehrach, H.5    Nordhoff, E.6
  • 18
    • 33644841214 scopus 로고    scopus 로고
    • Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins
    • Cao, R., Li, X., Liu, Z., Peng, X., Hu, W., Wang, X., Chen, P., Xie, J. and Liang, S. (2006) Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins. J. Proteom. Res. 5, 634-642.
    • (2006) J. Proteom. Res. , vol.5 , pp. 634-642
    • Cao, R.1    Li, X.2    Liu, Z.3    Peng, X.4    Hu, W.5    Wang, X.6    Chen, P.7    Xie, J.8    Liang, S.9
  • 19
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D. N., Pappin, D. J., Creasy, D. M. and Cottrell, J. S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 20
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H., Sadygov, R. G. and Yates, J. R., 3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76, 4193-4201.
    • (2004) Anal. Chem. , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 21
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte, J. and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 23
    • 0344406716 scopus 로고    scopus 로고
    • Reliability measures for membrane protein topology prediction algorithms
    • Melen, K., Krogh, A. and von Heijne, G. (2003) Reliability measures for membrane protein topology prediction algorithms. J. Mol. Biol. 327, 735-744.
    • (2003) J. Mol. Biol. , vol.327 , pp. 735-744
    • Melen, K.1    Krogh, A.2    Von Heijne, G.3
  • 27
    • 0033773868 scopus 로고    scopus 로고
    • Organic solvent extraction as a versatile procedure to identify hydrophobic chloroplast membrane proteins
    • Ferro, M., Seigneurin-Berny, D., Rolland, N., Chapel, A., Salvi, D., Garin, J. and Joyard, J. (2000) Organic solvent extraction as a versatile procedure to identify hydrophobic chloroplast membrane proteins. Electrophoresis 21, 3517-3526.
    • (2000) Electrophoresis , vol.21 , pp. 3517-3526
    • Ferro, M.1    Seigneurin-Berny, D.2    Rolland, N.3    Chapel, A.4    Salvi, D.5    Garin, J.6    Joyard, J.7
  • 29
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J. and Gygi, S. P. (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteom. Res. 2, 43-50.
    • (2003) J. Proteom. Res. , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 30
    • 0023472472 scopus 로고
    • Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
    • Schagger, H. and von Jagow, G. (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166, 368-379.
    • (1987) Anal. Biochem. , vol.166 , pp. 368-379
    • Schagger, H.1    Von Jagow, G.2
  • 31
    • 28444455281 scopus 로고    scopus 로고
    • Proteomic analysis of mouse liver plasma membrane: Use of differential extraction to enrich hydrophobic membrane proteins
    • Zhang, L., Xie, J., Wang, X., Liu, X., Tang, X., Cao, R., Hu, W., Nie, S., Fan, C. and Liang, S. (2005) Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics 5 (17), 4510-4524.
    • (2005) Proteomics , vol.5 , Issue.17 , pp. 4510-4524
    • Zhang, L.1    Xie, J.2    Wang, X.3    Liu, X.4    Tang, X.5    Cao, R.6    Hu, W.7    Nie, S.8    Fan, C.9    Liang, S.10
  • 33
    • 70449658667 scopus 로고    scopus 로고
    • Effect of strong detergents and chaotropes on the detection of proteins in two-dimensional gels
    • Fountoulakis, M. and Takacs, B. (2001) Effect of strong detergents and chaotropes on the detection of proteins in two-dimensional gels. Electrophoresis 22, 1593-1602.
    • (2001) Electrophoresis , vol.22 , pp. 1593-1602
    • Fountoulakis, M.1    Takacs, B.2
  • 35
    • 1842529218 scopus 로고    scopus 로고
    • Proteomic analysis of integral plasma membrane proteins
    • Zhao, Y., Zhang, W., Kho, Y. and Zhao, Y. (2004) Proteomic analysis of integral plasma membrane proteins. Anal. Chem. 76, 1817-1823.
    • (2004) Anal. Chem. , vol.76 , pp. 1817-1823
    • Zhao, Y.1    Zhang, W.2    Kho, Y.3    Zhao, Y.4
  • 36
    • 11144273935 scopus 로고    scopus 로고
    • Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking
    • Alexandersson, E., Saalbach, G., Larsson, C. and Kjellbom, P. (2004) Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking. Plant Cell Physiol. 45, 1543-1556.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1543-1556
    • Alexandersson, E.1    Saalbach, G.2    Larsson, C.3    Kjellbom, P.4
  • 38
    • 0032168039 scopus 로고    scopus 로고
    • Protein kinase A-catalyzed phosphorylation of heat shock protein 60 chaperone regulates its attachment to histone 2B in the T lymphocyte plasma membrane
    • USA
    • Khan, I. U., Wallin, R., Gupta, R. S. and Kammer, G. M. (1998) Protein kinase A-catalyzed phosphorylation of heat shock protein 60 chaperone regulates its attachment to histone 2B in the T lymphocyte plasma membrane. Proc. Natl. Acad. Sci. USA 95, 10425-10430.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 10425-10430
    • Khan, I.U.1    Wallin, R.2    Gupta, R.S.3    Kammer, G.M.4
  • 40
    • 14644442306 scopus 로고    scopus 로고
    • A comparative proteomic strategy for subcellular proteome research: ICAT approach coupled with bioinformatics prediction to ascertain rat liver mitochondrial proteins and indication of mitochondrial localization for catalase
    • Jiang, X. S., Dai, J., Sheng, Q. H., Zhang, L., Xia, Q. C., Wu, J. R. and Zeng, R. (2005) A comparative proteomic strategy for subcellular proteome research: ICAT approach coupled with bioinformatics prediction to ascertain rat liver mitochondrial proteins and indication of mitochondrial localization for catalase. Mol. Cell Proteom. 4, 12-34.
    • (2005) Mol. Cell Proteom. , vol.4 , pp. 12-34
    • Jiang, X.S.1    Dai, J.2    Sheng, Q.H.3    Zhang, L.4    Xia, Q.C.5    Wu, J.R.6    Zeng, R.7
  • 41
    • 0035000563 scopus 로고    scopus 로고
    • Expression profiles of cell-cell and cell-matrix junction proteins in developing human epidermis
    • Hentula, M., Peltonen, J. and Peltonen, S. (2001) Expression profiles of cell-cell and cell-matrix junction proteins in developing human epidermis. Arch. Dermatol. Res. 293, 259-267.
    • (2001) Arch. Dermatol. Res. , vol.293 , pp. 259-267
    • Hentula, M.1    Peltonen, J.2    Peltonen, S.3
  • 42
    • 0037947831 scopus 로고    scopus 로고
    • Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors
    • USA
    • Foster, L. J., De Hoog, C. L. and Mann, M. (2003) Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors. Proc. Natl. Acad. Sci. USA 100, 5813-5818.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 5813-5818
    • Foster, L.J.1    De Hoog, C.L.2    Mann, M.3


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