-
1
-
-
29244457242
-
Human liver proteome project: Plan, progress and perspectives
-
in press
-
He, F. C.; Human liver proteome project: plan, progress and perspectives. Mol. Cell Proteomics, in press.
-
Mol. Cell Proteomics
-
-
He, F.C.1
-
2
-
-
0038561131
-
A method for the comprehensive proteomic analysis of membrane proteins
-
Wu, C. C.; MacCoss, M. J.; Howell, K. E.; Yates, J. R. A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 2003, 21, 532-538.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 532-538
-
-
Wu, C.C.1
MacCoss, M.J.2
Howell, K.E.3
Yates, J.R.4
-
3
-
-
0037337308
-
The application of mass spectrometry to membrane proteomics
-
Wu, C. C.; Yates III, J. R. The application of mass spectrometry to membrane proteomics. Nat. Biotechnol. 2003, 21, 262-267.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 262-267
-
-
Wu, C.C.1
Yates III, J.R.2
-
4
-
-
0034120122
-
Proteomic analysis of the human colon carcinoma cell line (LIM 1215): Development of a membrane protein, database
-
Simpson, R. J.; Connolly, L. M.; Eddes, J. S.; Pereira, J. J.; Moritz, R. L.; Reid, G. E. Proteomic analysis of the human colon carcinoma cell line (LIM 1215): development of a membrane protein, database. Electrophoresis 2000, 21, 1707-1732.
-
(2000)
Electrophoresis
, vol.21
, pp. 1707-1732
-
-
Simpson, R.J.1
Connolly, L.M.2
Eddes, J.S.3
Pereira, J.J.4
Moritz, R.L.5
Reid, G.E.6
-
5
-
-
4644252123
-
A proteomic characterization of the PM of human epidermis by high-throughput mass spectrometry
-
Blonder, J.; Terunuma, A.; Conrads, T. P.; Chan, K. C.; Yee, C.; Lucas, D. A.; Schaefer, C. F.; Yu, L. R.; Issaq, H. J. A proteomic characterization of the PM of human epidermis by high-throughput mass spectrometry. J. Invest. Dermatol. 2004, 123, 691-699.
-
(2004)
J. Invest. Dermatol.
, vol.123
, pp. 691-699
-
-
Blonder, J.1
Terunuma, A.2
Conrads, T.P.3
Chan, K.C.4
Yee, C.5
Lucas, D.A.6
Schaefer, C.F.7
Yu, L.R.8
Issaq, H.J.9
-
6
-
-
13244251039
-
Proteomic analysis of PM vesicles, isolated from the rat renal cortex
-
Cutillas, P. R.; Biber, J.; Marks, J.; Jacob, R.; Stieger, B.; Cramer, R.; Waterfield, M.; Burlingame, A. L.; Unwin, R. J.; Proteomic analysis of PM vesicles, isolated from the rat renal cortex. Proteomics 2005, 5, 101-112.
-
(2005)
Proteomics
, vol.5
, pp. 101-112
-
-
Cutillas, P.R.1
Biber, J.2
Marks, J.3
Jacob, R.4
Stieger, B.5
Cramer, R.6
Waterfield, M.7
Burlingame, A.L.8
Unwin, R.J.9
-
7
-
-
0347134596
-
Affinity-enrichment of plasma membrane for proteomics analysis
-
Zhang, W.; Zhou, G.; Zhao, Y.; White, M. A.; Zhao, Y. Affinity-enrichment of plasma membrane for proteomics analysis. Electrophoresis 2003, 24, 2855-2863.
-
(2003)
Electrophoresis
, vol.24
, pp. 2855-2863
-
-
Zhang, W.1
Zhou, G.2
Zhao, Y.3
White, M.A.4
Zhao, Y.5
-
8
-
-
0042563232
-
Capillary HPLC/mass spectrometric analysis of proteins from affinity-purified plasma membrane
-
Zhao, Y.; Zhang, W.; White, M. A.; Zhao, Y. Capillary HPLC/mass spectrometric analysis of proteins from affinity-purified plasma membrane. Anal. Chem. 2003, 75, 3751-3757
-
(2003)
Anal. Chem.
, vol.75
, pp. 3751-3757
-
-
Zhao, Y.1
Zhang, W.2
White, M.A.3
Zhao, Y.4
-
9
-
-
11144300133
-
Integration of jacobson's pellicle method into proteomic strategies for plasma membrane proteins
-
Rahbar, A. M.; Fenselau, C.; Integration of jacobson's pellicle method into proteomic strategies for plasma membrane proteins. J. Proteome Res. 2004, 3, 1267-1277.
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1267-1277
-
-
Rahbar, A.M.1
Fenselau, C.2
-
10
-
-
3543023287
-
Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
-
Durr, E.; Yu, J.; Krasinska, K. M.; Carver, L. A.; Yates, J. R. Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nat. Biotechnol. 2004, 22 (8), 985-992.
-
(2004)
Nat. Biotechnol.
, vol.22
, Issue.8
, pp. 985-992
-
-
Durr, E.1
Yu, J.2
Krasinska, K.M.3
Carver, L.A.4
Yates, J.R.5
-
11
-
-
2942529235
-
Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy
-
Oh, P.; Li, Y.; Yu, J.; Durr, E.; Krasinska, K. M.; Carver, L. A.; Testa, J. E.; Schnitzer, J. E. Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy. Nature 2004, 429 (6992), 629-635.
-
(2004)
Nature
, vol.429
, Issue.6992
, pp. 629-635
-
-
Oh, P.1
Li, Y.2
Yu, J.3
Durr, E.4
Krasinska, K.M.5
Carver, L.A.6
Testa, J.E.7
Schnitzer, J.E.8
-
12
-
-
28444455281
-
Proteomic analysis of mouse liver plasma membrane: Use of differential extraction to enrich hydrophobic membrane proteins
-
Zhang, L. J.; Xie, J. Y.; Tang, X. K.; Wang, X. E.; Liu, X. H.; Cao, R.; Hu, W. J.; Nie, S.; Fang, C. M.; Liang, S. P. Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics 2005, 10.
-
(2005)
Proteomics
, pp. 10
-
-
Zhang, L.J.1
Xie, J.Y.2
Tang, X.K.3
Wang, X.E.4
Liu, X.H.5
Cao, R.6
Hu, W.J.7
Nie, S.8
Fang, C.M.9
Liang, S.P.10
-
13
-
-
0024516337
-
Isolation of purified plasma membranes from cultured cells and hepatomas by two-phase partition and preparative Free-flow electrophoresis
-
Placido, N.; David, D. N.; Morre, D. J. Isolation of purified plasma membranes from cultured cells and hepatomas by two-phase partition and preparative Free-flow electrophoresis. Cancer Res. 1989, 49, 2147-2156.
-
(1989)
Cancer Res.
, vol.49
, pp. 2147-2156
-
-
Placido, N.1
David, D.N.2
Morre, D.J.3
-
14
-
-
33644840807
-
Aqueous two-phase partition applied to the isolation of plasma membranes and Golgi apparatus from cultured mammalian cells
-
Morre, D. M.; Morre, D. J. Aqueous two-phase partition applied to the isolation of plasma membranes and Golgi apparatus from cultured mammalian cells. J. Chromatogr. B. 2000, 74, 3377-3387.
-
(2000)
J. Chromatogr. B
, vol.74
, pp. 3377-3387
-
-
Morre, D.M.1
Morre, D.J.2
-
15
-
-
0009919082
-
-
Fishers, D., Ed.; Academic Press: Orlando, FL
-
Walter, H.; Brooks, D. E. Partitioning in Aqueous Two-Phase Systems: Theory, Methods, Uses and Applications to Biotechnology, Fishers, D., Ed.; Academic Press: Orlando, FL, 1985; p 327.
-
(1985)
Partitioning in Aqueous Two-Phase Systems: Theory, Methods, Uses and Applications to Biotechnology
, pp. 327
-
-
Walter, H.1
Brooks, D.E.2
-
16
-
-
0024747496
-
Cell membrane techniques. Preparation of mammalian plasma membranes by aqueous two-phase partition
-
Morre, D. J.; Morre D. M. Cell membrane techniques. Preparation of mammalian plasma membranes by aqueous two-phase partition. BioTechniques 1989, 7 (9), 946-958.
-
(1989)
BioTechniques
, vol.7
, Issue.9
, pp. 946-958
-
-
Morre, D.J.1
Morre, D.M.2
-
17
-
-
5444256180
-
Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-b-D- maltoside as an additive for gel-based membrane proteomics
-
Hiroyuki, K.; Tsuyoshi, T.; Yasushi, I.; Toshitaka, S.; Yoshiya, O.; Takeshi, N. Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-b- D-maltoside as an additive for gel-based membrane proteomics. Rapid Commun. Mass Spectrom. 2004, 18, 2388-2394.
-
(2004)
Rapid Commun. Mass Spectrom.
, vol.18
, pp. 2388-2394
-
-
Hiroyuki, K.1
Tsuyoshi, T.2
Yasushi, I.3
Toshitaka, S.4
Yoshiya, O.5
Takeshi, N.6
-
18
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometric data
-
Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometric data. Electrophoresis 1999, 20 (18), 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
19
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; Butler, H.; Cherry, J. M.; Davis, A. P.; Dolinski, K.; Dwight, S. S.; Eppig, J. T. Gene Ontology: tool for the unification of biology. Nat. Genetics 2000, 25, 25-29.
-
(2000)
Nat. Genetics
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
20
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A.; Larsson, B.; Heijne, G.; Sonnhammer, E. L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305(3), 567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Heijne, G.3
Sonnhammer, E.L.4
-
21
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157, 105-132.
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
23
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H.; Sadygov, R. G.; Yates, J. R. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates, J.R.3
-
24
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics. Mol. Cell Proteomics 2005, 4, 1487-1502.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
Sevinsky, J.R.6
Resing, K.A.7
Ahn, N.G.8
-
25
-
-
2642535128
-
A high-throughput approach for subcellular proteome
-
Jiang, X. S.; Zhou, H.; Zhang, L.; Sheng, Q. H.; Zeng, R. A high-throughput approach for subcellular proteome. Mol. Cell Proteomics 2004, 3, 441-455.
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 441-455
-
-
Jiang, X.S.1
Zhou, H.2
Zhang, L.3
Sheng, Q.H.4
Zeng, R.5
-
26
-
-
0033769442
-
High-throughput profiling of the mitochondrial proteome using affinity fractionation and automation
-
Lopez, M. F.; Kristal, B. S.; Chernokalskaya, E.; Lazarev, A.; Shestopalov, A. I.; Bogdanova, A.; Robinson, M. High-throughput profiling of the mitochondrial proteome using affinity fractionation and automation. Electrophoresis 2000, 21, 3427-3440
-
(2000)
Electrophoresis
, vol.21
, pp. 3427-3440
-
-
Lopez, M.F.1
Kristal, B.S.2
Chernokalskaya, E.3
Lazarev, A.4
Shestopalov, A.I.5
Bogdanova, A.6
Robinson, M.7
-
27
-
-
0036179817
-
The rat liver mitochondrial proteins
-
Fountoulakis, M.; Berndt, P.; Langen, H.; Suter, L. The rat liver mitochondrial proteins. Electrophoresis 2002, 23, 311-328.
-
(2002)
Electrophoresis
, vol.23
, pp. 311-328
-
-
Fountoulakis, M.1
Berndt, P.2
Langen, H.3
Suter, L.4
-
28
-
-
0031409582
-
Two-dimensional mapping of the endogenous proteins of the rat hepatocyte Golgi complex cleared of proteins in transit
-
Taylor, R. S.; Fialka, I.; Jones, S. M.; Huber, L. A.; Howell, K. E. Two-dimensional mapping of the endogenous proteins of the rat hepatocyte Golgi complex cleared of proteins in transit. Electrophoresis 1997, 18, 2601-2612.
-
(1997)
Electrophoresis
, vol.18
, pp. 2601-2612
-
-
Taylor, R.S.1
Fialka, I.2
Jones, S.M.3
Huber, L.A.4
Howell, K.E.5
-
29
-
-
0033769457
-
Proteomics of rat liver Golgi complex: Minor proteins are identified through sequential fractionation
-
Taylor, R. S.; Wu, C. C.; Hays, L. G.; Eng, J. K.; Yate, J. R.; Howell, K. E. Proteomics of rat liver Golgi complex: Minor proteins are identified through sequential fractionation. Electrophoresis 2000, 21, 3441-3459.
-
(2000)
Electrophoresis
, vol.21
, pp. 3441-3459
-
-
Taylor, R.S.1
Wu, C.C.2
Hays, L.G.3
Eng, J.K.4
Yate, J.R.5
Howell, K.E.6
-
30
-
-
0037176203
-
Proteomic analysis of the rat liver
-
Fountoulakis, M.; Suter, L. Proteomic analysis of the rat liver. J. Chromatogr. B. 2002, 782, 197-218.
-
(2002)
J. Chromatogr. B
, vol.782
, pp. 197-218
-
-
Fountoulakis, M.1
Suter, L.2
-
31
-
-
0037008997
-
Proteomics analysis of the mammalian nuclear pore com-plex
-
Cronshaw, J. M.; Krutchinsky, A. N.; Zhang, W.; Chait, B. T.; Matunis, M. J. Proteomics analysis of the mammalian nuclear pore com-plex. J. Cell Biol. 2002, 158, 915-927.
-
(2002)
J. Cell Biol.
, vol.158
, pp. 915-927
-
-
Cronshaw, J.M.1
Krutchinsky, A.N.2
Zhang, W.3
Chait, B.T.4
Matunis, M.J.5
-
32
-
-
0028826565
-
Isolation and characterization of rat liver mitochondrial ribosomes
-
Cahill, A.; Baio, D. L.; Cunningham, C. C. Isolation and characterization of rat liver mitochondrial ribosomes. Anal. Biochem. 1995, 232, 47-55.
-
(1995)
Anal. Biochem.
, vol.232
, pp. 47-55
-
-
Cahill, A.1
Baio, D.L.2
Cunningham, C.C.3
-
33
-
-
0034066471
-
Membrane proteins and proteomics: Un amour impossible?
-
Santoni, V.; Molloy, M.; Rabilloud, T. Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000, 21, 1054-1070.
-
(2000)
Electrophoresis
, vol.21
, pp. 1054-1070
-
-
Santoni, V.1
Molloy, M.2
Rabilloud, T.3
-
34
-
-
0037434977
-
Biomedical informatics for proteomics
-
Boguski, M. S.; McIntosh, M. W. Biomedical informatics for proteomics. Nature 2003, 422, 233-237.
-
(2003)
Nature
, vol.422
, pp. 233-237
-
-
Boguski, M.S.1
McIntosh, M.W.2
-
35
-
-
1042266254
-
Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS
-
Nesvizhskii, A. I.; Aebersold, R. Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS. Drug Discuss. Today 2004, 9, 173-181.
-
(2004)
Drug Discuss. Today
, vol.9
, pp. 173-181
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
36
-
-
2542640024
-
Protein identification by mass spectrometry: Issues to be considered
-
Baldwin, M. A. Protein identification by mass spectrometry: issues to be considered. Mol. Cell. Proteomics 2004, 3 (1), 1-9.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, Issue.1
, pp. 1-9
-
-
Baldwin, M.A.1
-
37
-
-
27644555055
-
Interpretation of shotgun proteomics data: The Protein inference problem
-
Nesvizhskii, A. I.; Aebersold, R. Interpretation of shotgun proteomics data: the Protein inference problem. Mol. Cell Proteomics 2005, 4(10), 1419-1440.
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.10
, pp. 1419-1440
-
-
Nesvizhskii, A.I.1
Aebersold, R.2
-
38
-
-
20844457100
-
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
-
Chen Y.; Kwon, S. W.; Kim, S. C.; Zhao, Y. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. J. Proteome Res. 2005, 998-1005.
-
(2005)
J. Proteome Res.
, pp. 998-1005
-
-
Chen, Y.1
Kwon, S.W.2
Kim, S.C.3
Zhao, Y.4
-
39
-
-
3042623823
-
Proteomic analysis of detergent-resistant membrane rafts
-
Blonder, J.; Hale, M. L.; Lucas, D. A.; Schaefer, C. F.; Yu, L. R.; Conrads, T. P.; Issaq, H. J.; Stiles, B. G.; Veenstra, T. D. Proteomic analysis of detergent-resistant membrane rafts. Electrophoresis 2004, 25 (9), 1307-1318.
-
(2004)
Electrophoresis
, vol.25
, Issue.9
, pp. 1307-1318
-
-
Blonder, J.1
Hale, M.L.2
Lucas, D.A.3
Schaefer, C.F.4
Yu, L.R.5
Conrads, T.P.6
Issaq, H.J.7
Stiles, B.G.8
Veenstra, T.D.9
-
40
-
-
14944385370
-
A proteomic analysis of lysosomal integral membrane proteins reveals the diverse composition of the organelle
-
Bagshaw, R. D.; Mahuran, D. J.; Callahan, J. W. A proteomic analysis of lysosomal integral membrane proteins reveals the diverse composition of the organelle. Mol. Cell Proteomics 2005, 4 (2), 133-143.
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.2
, pp. 133-143
-
-
Bagshaw, R.D.1
Mahuran, D.J.2
Callahan, J.W.3
-
41
-
-
33644838519
-
Mammalian organelle map by protein correlation profiling
-
August 28-September 1, Munich. Invited Speaker Abstracts
-
Foster, C. L.; Hoog, D.; Xie, X.; Mootha, V.; Mann, M. A. Mammalian organelle map by protein correlation profiling. HUPO 4th annual world congress, August 28-September 1, 2005, Munich. Invited Speaker Abstracts.
-
(2005)
HUPO 4th Annual World Congress
-
-
Foster, C.L.1
Hoog, D.2
Xie, X.3
Mootha, V.4
Mann, M.A.5
-
42
-
-
0027752018
-
A membrane-bound form of protein disulfide isomerase (PDI) and the hepatic uptake of organic anions
-
Honscha, W.; Ottallah, M.; Kistner, A.; Platte, H.; Petzinger, E.; A. membrane-bound form of protein disulfide isomerase (PDI) and the hepatic uptake of organic anions. Biochim Biophys. Acta 1993, 1153, 175-183.
-
(1993)
Biochim Biophys. Acta
, vol.1153
, pp. 175-183
-
-
Honscha, W.1
Ottallah, M.2
Kistner, A.3
Platte, H.4
Petzinger, E.5
-
43
-
-
8744293655
-
Lipid raft proteome reveals ATP synthase complex in the cell surface
-
Bae, T. J.; Kim, M. S.; Kim, J. W.; Kim, B. W.; Choo, H. J.; Lee, J. W.; Kim, K. B.; Lee, C. S.; Kim, J. H.; Chang, S. Y.; Kang, C. Y.; Lee, S. W.; Ko, Y. G. Lipid raft proteome reveals ATP synthase complex in the cell surface. Proteomics 2004, 4 (11), 3536-3548.
-
(2004)
Proteomics
, vol.4
, Issue.11
, pp. 3536-3548
-
-
Bae, T.J.1
Kim, M.S.2
Kim, J.W.3
Kim, B.W.4
Choo, H.J.5
Lee, J.W.6
Kim, K.B.7
Lee, C.S.8
Kim, J.H.9
Chang, S.Y.10
Kang, C.Y.11
Lee, S.W.12
Ko, Y.G.13
|