메뉴 건너뛰기




Volumn 5, Issue 3, 2006, Pages 634-642

Integration of a two-phase partition method into proteomics research on rat liver plasma membrane proteins

Author keywords

LC MS MS; Plasma membrane; Plasma membrane proteins; Rat liver; Two phase partition

Indexed keywords

5' NUCLEOTIDASE; ACTIVATED LEUKOCYTE CELL ADHESION MOLECULE; ADENOSINE TRIPHOSPHATASE (POTASSIUM SODIUM); BETA1 INTEGRIN; CADHERIN; CALNEXIN; CARRIER PROTEIN; CELL MEMBRANE PROTEIN; CYTOCHROME C OXIDASE; CYTOCHROME P450 1A2; CYTOCHROME P450 2A1; CYTOCHROME P450 2A3; CYTOCHROME P450 2C7; CYTOCHROME P450 2D4; CYTOCHROME P450 2D5; EPOXIDE HYDROLASE; FATTY ACID AMIDASE; GAP JUNCTION PROTEIN; GLUCURONOSYLTRANSFERASE; GUANINE NUCLEOTIDE BINDING PROTEIN; LIPOCORTIN 1; LIVER PROTEIN; LONG CHAIN FATTY ACID COENZYME A LIGASE; MOESIN; ORGANIC CATION TRANSPORTER; PROTEIN DISULFIDE ISOMERASE; PROTEOME; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; TRYPSIN; UNCLASSIFIED DRUG; WATER;

EID: 33644841214     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr050387a     Document Type: Article
Times cited : (74)

References (43)
  • 1
    • 29244457242 scopus 로고    scopus 로고
    • Human liver proteome project: Plan, progress and perspectives
    • in press
    • He, F. C.; Human liver proteome project: plan, progress and perspectives. Mol. Cell Proteomics, in press.
    • Mol. Cell Proteomics
    • He, F.C.1
  • 2
    • 0038561131 scopus 로고    scopus 로고
    • A method for the comprehensive proteomic analysis of membrane proteins
    • Wu, C. C.; MacCoss, M. J.; Howell, K. E.; Yates, J. R. A method for the comprehensive proteomic analysis of membrane proteins. Nat. Biotechnol. 2003, 21, 532-538.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 532-538
    • Wu, C.C.1    MacCoss, M.J.2    Howell, K.E.3    Yates, J.R.4
  • 3
    • 0037337308 scopus 로고    scopus 로고
    • The application of mass spectrometry to membrane proteomics
    • Wu, C. C.; Yates III, J. R. The application of mass spectrometry to membrane proteomics. Nat. Biotechnol. 2003, 21, 262-267.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 262-267
    • Wu, C.C.1    Yates III, J.R.2
  • 4
    • 0034120122 scopus 로고    scopus 로고
    • Proteomic analysis of the human colon carcinoma cell line (LIM 1215): Development of a membrane protein, database
    • Simpson, R. J.; Connolly, L. M.; Eddes, J. S.; Pereira, J. J.; Moritz, R. L.; Reid, G. E. Proteomic analysis of the human colon carcinoma cell line (LIM 1215): development of a membrane protein, database. Electrophoresis 2000, 21, 1707-1732.
    • (2000) Electrophoresis , vol.21 , pp. 1707-1732
    • Simpson, R.J.1    Connolly, L.M.2    Eddes, J.S.3    Pereira, J.J.4    Moritz, R.L.5    Reid, G.E.6
  • 7
    • 0347134596 scopus 로고    scopus 로고
    • Affinity-enrichment of plasma membrane for proteomics analysis
    • Zhang, W.; Zhou, G.; Zhao, Y.; White, M. A.; Zhao, Y. Affinity-enrichment of plasma membrane for proteomics analysis. Electrophoresis 2003, 24, 2855-2863.
    • (2003) Electrophoresis , vol.24 , pp. 2855-2863
    • Zhang, W.1    Zhou, G.2    Zhao, Y.3    White, M.A.4    Zhao, Y.5
  • 8
    • 0042563232 scopus 로고    scopus 로고
    • Capillary HPLC/mass spectrometric analysis of proteins from affinity-purified plasma membrane
    • Zhao, Y.; Zhang, W.; White, M. A.; Zhao, Y. Capillary HPLC/mass spectrometric analysis of proteins from affinity-purified plasma membrane. Anal. Chem. 2003, 75, 3751-3757
    • (2003) Anal. Chem. , vol.75 , pp. 3751-3757
    • Zhao, Y.1    Zhang, W.2    White, M.A.3    Zhao, Y.4
  • 9
    • 11144300133 scopus 로고    scopus 로고
    • Integration of jacobson's pellicle method into proteomic strategies for plasma membrane proteins
    • Rahbar, A. M.; Fenselau, C.; Integration of jacobson's pellicle method into proteomic strategies for plasma membrane proteins. J. Proteome Res. 2004, 3, 1267-1277.
    • (2004) J. Proteome Res. , vol.3 , pp. 1267-1277
    • Rahbar, A.M.1    Fenselau, C.2
  • 10
    • 3543023287 scopus 로고    scopus 로고
    • Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
    • Durr, E.; Yu, J.; Krasinska, K. M.; Carver, L. A.; Yates, J. R. Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nat. Biotechnol. 2004, 22 (8), 985-992.
    • (2004) Nat. Biotechnol. , vol.22 , Issue.8 , pp. 985-992
    • Durr, E.1    Yu, J.2    Krasinska, K.M.3    Carver, L.A.4    Yates, J.R.5
  • 11
    • 2942529235 scopus 로고    scopus 로고
    • Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy
    • Oh, P.; Li, Y.; Yu, J.; Durr, E.; Krasinska, K. M.; Carver, L. A.; Testa, J. E.; Schnitzer, J. E. Subtractive proteomic mapping of the endothelial surface in lung and solid tumours for tissue-specific therapy. Nature 2004, 429 (6992), 629-635.
    • (2004) Nature , vol.429 , Issue.6992 , pp. 629-635
    • Oh, P.1    Li, Y.2    Yu, J.3    Durr, E.4    Krasinska, K.M.5    Carver, L.A.6    Testa, J.E.7    Schnitzer, J.E.8
  • 12
    • 28444455281 scopus 로고    scopus 로고
    • Proteomic analysis of mouse liver plasma membrane: Use of differential extraction to enrich hydrophobic membrane proteins
    • Zhang, L. J.; Xie, J. Y.; Tang, X. K.; Wang, X. E.; Liu, X. H.; Cao, R.; Hu, W. J.; Nie, S.; Fang, C. M.; Liang, S. P. Proteomic analysis of mouse liver plasma membrane: use of differential extraction to enrich hydrophobic membrane proteins. Proteomics 2005, 10.
    • (2005) Proteomics , pp. 10
    • Zhang, L.J.1    Xie, J.Y.2    Tang, X.K.3    Wang, X.E.4    Liu, X.H.5    Cao, R.6    Hu, W.J.7    Nie, S.8    Fang, C.M.9    Liang, S.P.10
  • 13
    • 0024516337 scopus 로고
    • Isolation of purified plasma membranes from cultured cells and hepatomas by two-phase partition and preparative Free-flow electrophoresis
    • Placido, N.; David, D. N.; Morre, D. J. Isolation of purified plasma membranes from cultured cells and hepatomas by two-phase partition and preparative Free-flow electrophoresis. Cancer Res. 1989, 49, 2147-2156.
    • (1989) Cancer Res. , vol.49 , pp. 2147-2156
    • Placido, N.1    David, D.N.2    Morre, D.J.3
  • 14
    • 33644840807 scopus 로고    scopus 로고
    • Aqueous two-phase partition applied to the isolation of plasma membranes and Golgi apparatus from cultured mammalian cells
    • Morre, D. M.; Morre, D. J. Aqueous two-phase partition applied to the isolation of plasma membranes and Golgi apparatus from cultured mammalian cells. J. Chromatogr. B. 2000, 74, 3377-3387.
    • (2000) J. Chromatogr. B , vol.74 , pp. 3377-3387
    • Morre, D.M.1    Morre, D.J.2
  • 16
    • 0024747496 scopus 로고
    • Cell membrane techniques. Preparation of mammalian plasma membranes by aqueous two-phase partition
    • Morre, D. J.; Morre D. M. Cell membrane techniques. Preparation of mammalian plasma membranes by aqueous two-phase partition. BioTechniques 1989, 7 (9), 946-958.
    • (1989) BioTechniques , vol.7 , Issue.9 , pp. 946-958
    • Morre, D.J.1    Morre, D.M.2
  • 17
    • 5444256180 scopus 로고    scopus 로고
    • Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-b-D- maltoside as an additive for gel-based membrane proteomics
    • Hiroyuki, K.; Tsuyoshi, T.; Yasushi, I.; Toshitaka, S.; Yoshiya, O.; Takeshi, N. Efficient in-gel digestion procedure using 5-cyclohexyl-1-pentyl-b- D-maltoside as an additive for gel-based membrane proteomics. Rapid Commun. Mass Spectrom. 2004, 18, 2388-2394.
    • (2004) Rapid Commun. Mass Spectrom. , vol.18 , pp. 2388-2394
    • Hiroyuki, K.1    Tsuyoshi, T.2    Yasushi, I.3    Toshitaka, S.4    Yoshiya, O.5    Takeshi, N.6
  • 18
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometric data
    • Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-based protein identification by searching sequence databases using mass spectrometric data. Electrophoresis 1999, 20 (18), 3551-3567.
    • (1999) Electrophoresis , vol.20 , Issue.18 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 20
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh, A.; Larsson, B.; Heijne, G.; Sonnhammer, E. L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305(3), 567-580.
    • (2001) J. Mol. Biol. , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Heijne, G.3    Sonnhammer, E.L.4
  • 21
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte, J.; Doolittle, R. F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 1982, 157, 105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 23
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H.; Sadygov, R. G.; Yates, J. R. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76, 4193-4201.
    • (2004) Anal. Chem. , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates, J.R.3
  • 28
    • 0031409582 scopus 로고    scopus 로고
    • Two-dimensional mapping of the endogenous proteins of the rat hepatocyte Golgi complex cleared of proteins in transit
    • Taylor, R. S.; Fialka, I.; Jones, S. M.; Huber, L. A.; Howell, K. E. Two-dimensional mapping of the endogenous proteins of the rat hepatocyte Golgi complex cleared of proteins in transit. Electrophoresis 1997, 18, 2601-2612.
    • (1997) Electrophoresis , vol.18 , pp. 2601-2612
    • Taylor, R.S.1    Fialka, I.2    Jones, S.M.3    Huber, L.A.4    Howell, K.E.5
  • 29
    • 0033769457 scopus 로고    scopus 로고
    • Proteomics of rat liver Golgi complex: Minor proteins are identified through sequential fractionation
    • Taylor, R. S.; Wu, C. C.; Hays, L. G.; Eng, J. K.; Yate, J. R.; Howell, K. E. Proteomics of rat liver Golgi complex: Minor proteins are identified through sequential fractionation. Electrophoresis 2000, 21, 3441-3459.
    • (2000) Electrophoresis , vol.21 , pp. 3441-3459
    • Taylor, R.S.1    Wu, C.C.2    Hays, L.G.3    Eng, J.K.4    Yate, J.R.5    Howell, K.E.6
  • 30
    • 0037176203 scopus 로고    scopus 로고
    • Proteomic analysis of the rat liver
    • Fountoulakis, M.; Suter, L. Proteomic analysis of the rat liver. J. Chromatogr. B. 2002, 782, 197-218.
    • (2002) J. Chromatogr. B , vol.782 , pp. 197-218
    • Fountoulakis, M.1    Suter, L.2
  • 32
    • 0028826565 scopus 로고
    • Isolation and characterization of rat liver mitochondrial ribosomes
    • Cahill, A.; Baio, D. L.; Cunningham, C. C. Isolation and characterization of rat liver mitochondrial ribosomes. Anal. Biochem. 1995, 232, 47-55.
    • (1995) Anal. Biochem. , vol.232 , pp. 47-55
    • Cahill, A.1    Baio, D.L.2    Cunningham, C.C.3
  • 33
    • 0034066471 scopus 로고    scopus 로고
    • Membrane proteins and proteomics: Un amour impossible?
    • Santoni, V.; Molloy, M.; Rabilloud, T. Membrane proteins and proteomics: un amour impossible? Electrophoresis 2000, 21, 1054-1070.
    • (2000) Electrophoresis , vol.21 , pp. 1054-1070
    • Santoni, V.1    Molloy, M.2    Rabilloud, T.3
  • 34
    • 0037434977 scopus 로고    scopus 로고
    • Biomedical informatics for proteomics
    • Boguski, M. S.; McIntosh, M. W. Biomedical informatics for proteomics. Nature 2003, 422, 233-237.
    • (2003) Nature , vol.422 , pp. 233-237
    • Boguski, M.S.1    McIntosh, M.W.2
  • 35
    • 1042266254 scopus 로고    scopus 로고
    • Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS
    • Nesvizhskii, A. I.; Aebersold, R. Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS. Drug Discuss. Today 2004, 9, 173-181.
    • (2004) Drug Discuss. Today , vol.9 , pp. 173-181
    • Nesvizhskii, A.I.1    Aebersold, R.2
  • 36
    • 2542640024 scopus 로고    scopus 로고
    • Protein identification by mass spectrometry: Issues to be considered
    • Baldwin, M. A. Protein identification by mass spectrometry: issues to be considered. Mol. Cell. Proteomics 2004, 3 (1), 1-9.
    • (2004) Mol. Cell. Proteomics , vol.3 , Issue.1 , pp. 1-9
    • Baldwin, M.A.1
  • 37
    • 27644555055 scopus 로고    scopus 로고
    • Interpretation of shotgun proteomics data: The Protein inference problem
    • Nesvizhskii, A. I.; Aebersold, R. Interpretation of shotgun proteomics data: the Protein inference problem. Mol. Cell Proteomics 2005, 4(10), 1419-1440.
    • (2005) Mol. Cell Proteomics , vol.4 , Issue.10 , pp. 1419-1440
    • Nesvizhskii, A.I.1    Aebersold, R.2
  • 38
    • 20844457100 scopus 로고    scopus 로고
    • Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
    • Chen Y.; Kwon, S. W.; Kim, S. C.; Zhao, Y. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. J. Proteome Res. 2005, 998-1005.
    • (2005) J. Proteome Res. , pp. 998-1005
    • Chen, Y.1    Kwon, S.W.2    Kim, S.C.3    Zhao, Y.4
  • 40
    • 14944385370 scopus 로고    scopus 로고
    • A proteomic analysis of lysosomal integral membrane proteins reveals the diverse composition of the organelle
    • Bagshaw, R. D.; Mahuran, D. J.; Callahan, J. W. A proteomic analysis of lysosomal integral membrane proteins reveals the diverse composition of the organelle. Mol. Cell Proteomics 2005, 4 (2), 133-143.
    • (2005) Mol. Cell Proteomics , vol.4 , Issue.2 , pp. 133-143
    • Bagshaw, R.D.1    Mahuran, D.J.2    Callahan, J.W.3
  • 41
    • 33644838519 scopus 로고    scopus 로고
    • Mammalian organelle map by protein correlation profiling
    • August 28-September 1, Munich. Invited Speaker Abstracts
    • Foster, C. L.; Hoog, D.; Xie, X.; Mootha, V.; Mann, M. A. Mammalian organelle map by protein correlation profiling. HUPO 4th annual world congress, August 28-September 1, 2005, Munich. Invited Speaker Abstracts.
    • (2005) HUPO 4th Annual World Congress
    • Foster, C.L.1    Hoog, D.2    Xie, X.3    Mootha, V.4    Mann, M.A.5
  • 42
    • 0027752018 scopus 로고
    • A membrane-bound form of protein disulfide isomerase (PDI) and the hepatic uptake of organic anions
    • Honscha, W.; Ottallah, M.; Kistner, A.; Platte, H.; Petzinger, E.; A. membrane-bound form of protein disulfide isomerase (PDI) and the hepatic uptake of organic anions. Biochim Biophys. Acta 1993, 1153, 175-183.
    • (1993) Biochim Biophys. Acta , vol.1153 , pp. 175-183
    • Honscha, W.1    Ottallah, M.2    Kistner, A.3    Platte, H.4    Petzinger, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.