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Volumn 74, Issue 1, 2009, Pages 16-24

On the origins of enzyme inhibitor selectivity and promiscuity: A case study of protein kinase binding to staurosporine

Author keywords

ATP binding site; Kinase selectivity; Mantel test; Staurosporine; Structural analysis

Indexed keywords

ADENOSINE TRIPHOSPHATE; ASPARTIC ACID; GLYCINE; METHYLAMINE; PROTEIN KINASE; STAUROSPORINE;

EID: 67650457580     PISSN: 17470277     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1747-0285.2009.00832.x     Document Type: Article
Times cited : (75)

References (30)
  • 1
    • 0037032835 scopus 로고    scopus 로고
    • The protein kinase complement of the human genome
    • DOI 10.1126/science.1075762
    • Manning G., Whyte D.B., Martinez R., Hunter T., Sudarsanam S. (2002) The protein kinase complement of the human genome. Science 298 : 1912 1934. (Pubitemid 35425239)
    • (2002) Science , vol.298 , Issue.5600 , pp. 1912-1934
    • Manning, G.1    Whyte, D.B.2    Martinez, R.3    Hunter, T.4    Sudarsanam, S.5
  • 2
    • 0037013143 scopus 로고    scopus 로고
    • The conformational plasticity of protein kinases
    • DOI 10.1016/S0092-8674(02)00741-9
    • Huse M., Kuriyan J. (2002) The conformational plasticity of protein kinases. Cell 109 : 275 282. (Pubitemid 34606870)
    • (2002) Cell , vol.109 , Issue.3 , pp. 275-282
    • Huse, M.1    Kuriyan, J.2
  • 3
    • 0035902180 scopus 로고    scopus 로고
    • Oncogenic kinase signalling
    • DOI 10.1038/35077225
    • Blume-Jensen P., Hunter T. (2001) Oncogenic kinase signalling. Nature 411 : 355 365. (Pubitemid 32467045)
    • (2001) Nature , vol.411 , Issue.6835 , pp. 355-365
    • Blume-Jensen, P.1    Hunter, T.2
  • 4
    • 0036527429 scopus 로고    scopus 로고
    • Protein kinases - The major drug targets of the twenty-first century?
    • Cohen P. (2002) Protein kinases: the major drug targets of the twenty-first century? Nat Rev Drug Discov 1 : 309 315. (Pubitemid 37361447)
    • (2002) Nature Reviews Drug Discovery , vol.1 , Issue.4 , pp. 309-315
    • Cohen, P.1
  • 5
    • 0032850020 scopus 로고    scopus 로고
    • p38 MAPK signalling cascades in inflammatory disease
    • DOI 10.1016/S1357-4310(99)01544-0, PII S1357431099015440
    • Herlaar E., Brown Z. (1999) p38 MAPK signalling cascades in inflammatory disease. Mol Med Today 5 : 439 447. (Pubitemid 29455026)
    • (1999) Molecular Medicine Today , vol.5 , Issue.10 , pp. 439-447
    • Herlaar, E.1    Brown, Z.2
  • 6
    • 1642323740 scopus 로고    scopus 로고
    • Protein Kinase Inhibitors: Insights into Drug Design from Structure
    • DOI 10.1126/science.1095920
    • Noble M.E., Endicott J.A., Johnson L.N. (2004) Protein kinase inhibitors: insights into drug design from structure. Science 303 : 1800 1805. (Pubitemid 38374863)
    • (2004) Science , vol.303 , Issue.5665 , pp. 1800-1805
    • Noble, M.E.M.1    Endicott, J.A.2    Johnson, L.N.3
  • 7
    • 1642412825 scopus 로고    scopus 로고
    • Inhibitors of Protein Kinase Signaling Pathways: Emerging Therapies for Cardiovascular Disease
    • DOI 10.1161/01.CIR.0000118538.21306.A9
    • Force T., Kuida K., Namchuk M., Parang K., Kyriakis J.M. (2004) Inhibitors of protein kinase signaling pathways: emerging therapies for cardiovascular disease. Circulation 109 : 1196 1205. (Pubitemid 38372775)
    • (2004) Circulation , vol.109 , Issue.10 , pp. 1196-1205
    • Force, T.1    Kuida, K.2    Namchuk, M.3    Parang, K.4    Kyriakis, J.M.5
  • 9
    • 24944552075 scopus 로고    scopus 로고
    • High affinity targets of protein kinase inhibitors have similar residues at the positions energetically important for binding
    • DOI 10.1016/j.jmb.2005.07.074, PII S0022283605009009
    • Sheinerman F.B., Giraud E., Laoui A. (2005) High affinity targets of protein kinase inhibitors have similar residues at the positions energetically important for binding. J Mol Biol 352 : 1134 1156. (Pubitemid 41316721)
    • (2005) Journal of Molecular Biology , vol.352 , Issue.5 , pp. 1134-1156
    • Sheinerman, F.B.1    Giraud, E.2    Laoui, A.3
  • 10
    • 0017395981 scopus 로고
    • A new alkaloid AM 2282 of Streptomyces origin taxonomy, fermentation, isolation and preliminary characterization
    • Omura S., Iwai Y., Hirano A., Nakagawa A., Awaya J., Tsuchya H., Takahashi Y., Masuma R. (1977) A new alkaloid AM-2282 of Streptomyces origin. Taxonomy, fermentation, isolation and preliminary characterization. J Antibiot (Tokyo) 30 : 275 282. (Pubitemid 8119845)
    • (1977) Journal of Antibiotics , vol.30 , Issue.4 , pp. 275-282
    • Omura, S.1    Iwai, Y.2    Hirano, A.3
  • 11
    • 0028866845 scopus 로고
    • Different susceptibility of protein kinases to staurosporine inhibition. Kinetic studies and molecular bases for the resistance of protein kinase CK2
    • doi: M.A.*Biggs III. W.H.*Treiber D.K.*Atteridge C.E.*Azimioara M.D.*Benedetti M.G.*Carter T.A.*et al. A small molecule-kinase interaction map for clinical kinase inhibitor. Nat Biotechnol
    • Meggio F., Deana A.D., Ruzzene M., Brunati A.M., Cesaro L., Guerra B., Meyer T., Mett H., Fabbro D., Furet P. et al. (1995) Different susceptibility of protein kinases to staurosporine inhibition. Kinetic studies and molecular bases for the resistance of protein kinase CK2. Eur J Biochem 234 : 317 322 doi : M.A., Biggs W.H. III., Treiber D.K., Atteridge C.E., Azimioara M.D., Benedetti M.G., Carter T.A. et al. (2005) A small molecule-kinase interaction map for clinical kinase inhibitors. Nat Biotechnol 23 : 329 336.
    • (1995) Eur J Biochem , vol.234 , pp. 317-322
    • Meggio, F.1    Deana, A.D.2    Ruzzene, M.3    Brunati, A.M.4    Cesaro, L.5    Guerra, B.6    Meyer, T.7    Mett, H.8    Fabbro, D.9    Furet, P.10
  • 12
    • 0014842790 scopus 로고
    • A technique of nonparametric multivariate analysis
    • Mantel N., Valand R.S. (1970) A technique of nonparametric multivariate analysis. Biometrics 26 : 547 558.
    • (1970) Biometrics , vol.26 , pp. 547-558
    • Mantel, N.1    Valand, R.S.2
  • 13
    • 9144231249 scopus 로고    scopus 로고
    • E-MSD: An integrated data resource for bioinformatics
    • doi:10.1093/nar/gkh078 G.*Dunbrack Jr. R.L. (2003) PISCES: a protein sequence culling server. Bioinformatics 19 : 1589 1591
    • Golovin A., Oldfield T.J., Tate J.G., Velankar S., Barton G.J., Boutselakis H., Dimitropoulos D. et al. (2004) E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res 32 : D211 D216 doi:10.1093/nar/gkh078 G., Dunbrack R.L. Jr. (2003) PISCES: a protein sequence culling server. Bioinformatics 19 : 1589 1591.
    • (2004) Nucleic Acids Res , vol.32
    • Golovin, A.1    Oldfield, T.J.2    Tate, J.G.3    Velankar, S.4    Barton, G.J.5    Boutselakis, H.6    Dimitropoulos, D.7
  • 14
    • 0025350388 scopus 로고
    • From comparisons of protein sequences and structures to protein modelling and design
    • Sali A., Overington J.P., Johnson M.S., Blundell T.L. (1990) From comparisons of protein sequences and structures to protein modelling and design. Trends Biochem Sci 15 : 235 240. (Pubitemid 20175357)
    • (1990) Trends in Biochemical Sciences , vol.15 , Issue.6 , pp. 235-240
    • Sali, A.1    Overington, J.P.2    Johnson, M.S.3    Blundell, T.L.4
  • 15
    • 0026342401 scopus 로고
    • Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase
    • Knighton D.R., Zheng J.H., Ten Eyck L.F., Ashford V.A., Xuong N.H., Taylor S.S., Sowadski J.M. (1991) Crystal structure of the catalytic subunit of cyclic adenosine monophosphate-dependent protein kinase. Science 253 : 407 414 R.H., Buzko O.V., Haste N.M., Taylor A., Gribskov M., Taylor S.S. (2006) Protein kinase resource: an integrated environment for phosphorylation research. Proteins 63 : 78 86. (Pubitemid 21917165)
    • (1991) Science , vol.253 , Issue.5018 , pp. 407-414
    • Knighton, D.R.1    Zheng, J.2    Ten Eyck, L.F.3    Ashford, V.A.4    Xuong, N.-H.5    Taylor, S.S.6    Sowadski, J.M.7
  • 16
    • 1542364165 scopus 로고    scopus 로고
    • Zt: A software tool for simple and partial Mantel tests
    • Bonnet E., Van de Peer Y. (2002) ZT: a software tool for simple and partial Mantel tests. J Stat Softw 7 : 1 12. (Pubitemid 39217779)
    • (2002) Journal of Statistical Software , vol.7 , pp. 1-12
    • Bonnet, E.1    Van De Peer, Y.2
  • 18
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page R.D.M. (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12 : 357 358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 19
    • 33845873289 scopus 로고    scopus 로고
    • Interactive Tree Of Life (iTOL): An online tool for phylogenetic tree display and annotation
    • DOI 10.1093/bioinformatics/btl529
    • Letunic I., Bork P. (2007) Interactive tree of life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23 : 127 128. (Pubitemid 46017867)
    • (2007) Bioinformatics , vol.23 , Issue.1 , pp. 127-128
    • Letunic, I.1    Bork, P.2
  • 23
    • 67650406921 scopus 로고    scopus 로고
    • New York. Addinsoft.
    • Fahmy T. (2008) XLSTAT 2008. New York : Addinsoft.
    • (2008) XLSTAT 2008.
    • Fahmy, T.1
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25 : 4876 4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 25
    • 58149092163 scopus 로고    scopus 로고
    • CREDO: A protein-ligand interaction database for drug discovery
    • Schreyer A., Blundell T. (2009) CREDO: a protein-ligand interaction database for drug discovery. Chem Biol Drug Des 73 : 157 167.
    • (2009) Chem Biol Drug des , vol.73 , pp. 157-167
    • Schreyer, A.1    Blundell, T.2
  • 26
    • 33846933784 scopus 로고    scopus 로고
    • Optimizing fragment and scaffold docking by use of molecular interaction fingerprints
    • DOI 10.1021/ci600342e
    • Marcou G., Rognan D. (2007) Optimizing fragment and scaffold docking by use of molecular interaction fingerprints. J Chem Inf Model 47 : 195 207. (Pubitemid 46237537)
    • (2007) Journal of Chemical Information and Modeling , vol.47 , Issue.1 , pp. 195-207
    • Marcou, G.1    Rognan, D.2
  • 27
    • 0017380132 scopus 로고
    • Two conformations of crystalline adenylate kinase
    • Sachsenheimer W., Schulz G.E. (1977) Two conformations of crystalline adenylate kinase. J Mol Biol 114 : 23 36. (Pubitemid 8149494)
    • (1977) Journal of Molecular Biology , vol.114 , Issue.1 , pp. 23-36
    • Sachsenheimer, W.1    Schulz, G.E.2
  • 28
    • 0030859238 scopus 로고    scopus 로고
    • Role of the glycine triad in the ATP-binding site of cAMP-dependent protein kinase
    • DOI 10.1074/jbc.272.27.16946
    • Hemmer W., McGlone M., Tsigelny I., Taylor S.S. (1997) Role of the glycine triad in the ATP-binding site of cAMP-dependent protein kinase. J Biol Chem 272 : 16946 16954 doi :. (Pubitemid 27289797)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.27 , pp. 16946-16954
    • Hemmer, W.1    McGlone, M.2    Tsigelny, I.3    Taylor, S.S.4
  • 29
    • 0032474777 scopus 로고    scopus 로고
    • New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids
    • DOI 10.1021/jm9700575
    • Sandberg M., Eriksson L., Jonsson J., Sjostrom M., Wold S. (1998) New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids. J Med Chem 41 : 2481 2491. (Pubitemid 28321898)
    • (1998) Journal of Medicinal Chemistry , vol.41 , Issue.14 , pp. 2481-2491
    • Sandberg, M.1    Eriksson, L.2    Jonsson, J.3    Sjostrom, M.4    Wold, S.5


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