-
1
-
-
0037429737
-
Epidermal growth factor receptor: Mechanisms of activation and signalling
-
Jorissen RN, Walker F, Pouliot N, Garrett TP, Ward CW, Burgess AW. Epidermal growth factor receptor: mechanisms of activation and signalling. Exp Cell Res 2003;284:31-53.
-
(2003)
Exp Cell Res
, vol.284
, pp. 31-53
-
-
Jorissen, R.N.1
Walker, F.2
Pouliot, N.3
Garrett, T.P.4
Ward, C.W.5
Burgess, A.W.6
-
2
-
-
0034773992
-
The EGFR family and its ligands in human cancer signalling mechanisms and therapeutic opportunities
-
Yarden Y. The EGFR family and its ligands in human cancer signalling mechanisms and therapeutic opportunities. Eur J Cancer 2001;37 (Suppl 4):S3-S8.
-
(2001)
Eur J Cancer
, vol.37
, Issue.SUPPL. 4
-
-
Yarden, Y.1
-
4
-
-
33749018813
-
Clinical implications of the mechanism of epidermal growth factor receptor inhibitors
-
Marshall J. Clinical implications of the mechanism of epidermal growth factor receptor inhibitors. Cancer 2006;107:1207-1218.
-
(2006)
Cancer
, vol.107
, pp. 1207-1218
-
-
Marshall, J.1
-
6
-
-
0033573921
-
Mechanism of biological synergy between cellular Src and epidermal growth factor receptor
-
Tice DA, Biscardi JS, Nickles AL, Parsons SJ. Mechanism of biological synergy between cellular Src and epidermal growth factor receptor. Proc Natl Acad Sci USA 1999;96:1415-1420.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 1415-1420
-
-
Tice, D.A.1
Biscardi, J.S.2
Nickles, A.L.3
Parsons, S.J.4
-
7
-
-
36549085536
-
Dynamic equilibrium between multiple active and inactive conformations explains regulation and oncogenic mutations in ErbB receptors
-
Landau M, Ben-Tal N. Dynamic equilibrium between multiple active and inactive conformations explains regulation and oncogenic mutations in ErbB receptors. Biochim Biophys Acta 2008;1785:12-31.
-
(2008)
Biochim Biophys Acta
, vol.1785
, pp. 12-31
-
-
Landau, M.1
Ben-Tal, N.2
-
8
-
-
0141599428
-
Structure of the epidermal growth factor receptor kinase domain alone and in complex with a 4-anilinoquinazoline inhibitor
-
Stamos J, Sliwkowski MX, Eigenbrot C. Structure of the epidermal growth factor receptor kinase domain alone and in complex with a 4-anilinoquinazoline inhibitor. J Biol Chem 2002;277:46265-46272.
-
(2002)
J Biol Chem
, vol.277
, pp. 46265-46272
-
-
Stamos, J.1
Sliwkowski, M.X.2
Eigenbrot, C.3
-
9
-
-
33745002702
-
An allosteric mechanism for activation of the kinase domain of epidermal growth factor receptor
-
Zhang X, Gureasko J, Shen K, Cole PA, Kuriyan J. An allosteric mechanism for activation of the kinase domain of epidermal growth factor receptor. Cell 2006;125:1137-1149.
-
(2006)
Cell
, vol.125
, pp. 1137-1149
-
-
Zhang, X.1
Gureasko, J.2
Shen, K.3
Cole, P.A.4
Kuriyan, J.5
-
10
-
-
34548052247
-
Database of somatic mutations in EGFR with analyses revealing indel hotspots but no smoking-associated signature
-
Gu D, Scaringe WA, Li K, Saldivar JS, Hill KA, Chen Z, Gonzalez KD, Sommer SS. Database of somatic mutations in EGFR with analyses revealing indel hotspots but no smoking-associated signature. Hum Mutat 2007;28:760-770.
-
(2007)
Hum Mutat
, vol.28
, pp. 760-770
-
-
Gu, D.1
Scaringe, W.A.2
Li, K.3
Saldivar, J.S.4
Hill, K.A.5
Chen, Z.6
Gonzalez, K.D.7
Sommer, S.S.8
-
11
-
-
2342471392
-
Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib
-
Lynch TJ, Bell DW, Sordella R, Gurubhagavatula S, Okimoto RA, Brannigan BW, Harris PL, Haserlat SM, Supko JG, Haluska FG, Louis DN, Christiani DC, Settleman J, Haber DA. Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib. N Engl J Med 2004;350:2129-2139.
-
(2004)
N Engl J Med
, vol.350
, pp. 2129-2139
-
-
Lynch, T.J.1
Bell, D.W.2
Sordella, R.3
Gurubhagavatula, S.4
Okimoto, R.A.5
Brannigan, B.W.6
Harris, P.L.7
Haserlat, S.M.8
Supko, J.G.9
Haluska, F.G.10
Louis, D.N.11
Christiani, D.C.12
Settleman, J.13
Haber, D.A.14
-
12
-
-
2342624080
-
EGFR mutations in lung cancer: Correlation with clinical response to gefitinib therapy
-
Paez JG, Janne PA, Lee JC, Tracy S, Greulich H, Gabriel S, Herman P, Kaye FJ, Lindeman N, Boggon TJ, Naoki K, Sasaki H, Fujii Y, Eck MJ, Sellers WR, Johnson BE, Meyerson M. EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapy. Science 2004;304:1497-1500.
-
(2004)
Science
, vol.304
, pp. 1497-1500
-
-
Paez, J.G.1
Janne, P.A.2
Lee, J.C.3
Tracy, S.4
Greulich, H.5
Gabriel, S.6
Herman, P.7
Kaye, F.J.8
Lindeman, N.9
Boggon, T.J.10
Naoki, K.11
Sasaki, H.12
Fujii, Y.13
Eck, M.J.14
Sellers, W.R.15
Johnson, B.E.16
Meyerson, M.17
-
13
-
-
43249096031
-
Structure and clinical relevance of the epidermal growth factor receptor in human cancer
-
Kumar A, Petri ET, Halmos B, Boggon TJ. Structure and clinical relevance of the epidermal growth factor receptor in human cancer. J Clin Oncol 2008;26:1742-1751.
-
(2008)
J Clin Oncol
, vol.26
, pp. 1742-1751
-
-
Kumar, A.1
Petri, E.T.2
Halmos, B.3
Boggon, T.J.4
-
14
-
-
33847406095
-
Structures of lung cancer-derived EGFR mutants and inhibitor complexes: Mechanism of activation and insights into differential inhibitor sensitivity
-
Yun CH, Boggon TJ, Li Y, Woo MS, Greulich H, Meyerson M, Eck MJ. Structures of lung cancer-derived EGFR mutants and inhibitor complexes: mechanism of activation and insights into differential inhibitor sensitivity. Cancer Cell 2007;11:217-227.
-
(2007)
Cancer Cell
, vol.11
, pp. 217-227
-
-
Yun, C.H.1
Boggon, T.J.2
Li, Y.3
Woo, M.S.4
Greulich, H.5
Meyerson, M.6
Eck, M.J.7
-
15
-
-
4644289313
-
A unique structure for epidermal growth factor receptor bound to GW572016 (Lapatinib): Relationships among protein conformation, inhibitor off-rate, and receptor activity in tumor cells
-
Wood ER, Truesdale AT, McDonald OB, Yuan D, Hassell A, Dickerson SH, Ellis B, Pennisi C, Horne E, Lackey K, Alligood KJ, Rusnak DW, Gilmer TM, Shewchuk L. A unique structure for epidermal growth factor receptor bound to GW572016 (Lapatinib): relationships among protein conformation, inhibitor off-rate, and receptor activity in tumor cells. Cancer Res 2004;64:6652-6659.
-
(2004)
Cancer Res
, vol.64
, pp. 6652-6659
-
-
Wood, E.R.1
Truesdale, A.T.2
McDonald, O.B.3
Yuan, D.4
Hassell, A.5
Dickerson, S.H.6
Ellis, B.7
Pennisi, C.8
Horne, E.9
Lackey, K.10
Alligood, K.J.11
Rusnak, D.W.12
Gilmer, T.M.13
Shewchuk, L.14
-
16
-
-
0037013143
-
The conformational plasticity of protein kinases
-
Huse M, Kuriyan J. The conformational plasticity of protein kinases. Cell 2002;109:275-282.
-
(2002)
Cell
, vol.109
, pp. 275-282
-
-
Huse, M.1
Kuriyan, J.2
-
17
-
-
33845197964
-
Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism
-
Kornev AP, Haste NM, Taylor SS, Eyck LF. Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism. Proc Natl Acad Sci USA 2006;103:17783-17788.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 17783-17788
-
-
Kornev, A.P.1
Haste, N.M.2
Taylor, S.S.3
Eyck, L.F.4
-
19
-
-
18744371588
-
Molecular dynamics and protein function
-
Karplus M, Kuriyan J. Molecular dynamics and protein function. Proc Natl Acad Sci USA 2005;102:6679-6685.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 6679-6685
-
-
Karplus, M.1
Kuriyan, J.2
-
20
-
-
49649108911
-
Solution conformations and dynamics of ABL kinase-inhibitor complexes determined by NMR substantiate the different binding modes of imatinib/nilotinib and dasatinib
-
Vajpai N, Strauss A, Fendrich G, Cowan-Jacob SW, Manley PW, Grzesiek S, Jahnke W. Solution conformations and dynamics of ABL kinase-inhibitor complexes determined by NMR substantiate the different binding modes of imatinib/nilotinib and dasatinib. J Biol Chem 2008;283:18292-18302.
-
(2008)
J Biol Chem
, vol.283
, pp. 18292-18302
-
-
Vajpai, N.1
Strauss, A.2
Fendrich, G.3
Cowan-Jacob, S.W.4
Manley, P.W.5
Grzesiek, S.6
Jahnke, W.7
-
21
-
-
0028455053
-
Targeted molecular dynamics: A new approach for searching pathways of conformational transitions
-
Schlitter J, Engels M, Kruger P. Targeted molecular dynamics: a new approach for searching pathways of conformational transitions. J Mol Graph 1994;12:84-89.
-
(1994)
J Mol Graph
, vol.12
, pp. 84-89
-
-
Schlitter, J.1
Engels, M.2
Kruger, P.3
-
22
-
-
0034665864
-
A dynamic model for the allosteric mechanism of GroEL
-
Ma J, Sigler PB, Xu Z, Karplus M. A dynamic model for the allosteric mechanism of GroEL. J Mol Biol 2000;302:303-313.
-
(2000)
J Mol Biol
, vol.302
, pp. 303-313
-
-
Ma, J.1
Sigler, P.B.2
Xu, Z.3
Karplus, M.4
-
23
-
-
33646755174
-
A Src-like inactive conformation in the abl tyrosine kinase domain
-
Levinson NM, Kuchment O, Shen K, Young MA, Koldobskiy M, Karplus M, Cole PA, Kuriyan J. A Src-like inactive conformation in the abl tyrosine kinase domain. PLoS Biol 2006;4:e144.
-
(2006)
PLoS Biol
, vol.4
-
-
Levinson, N.M.1
Kuchment, O.2
Shen, K.3
Young, M.A.4
Koldobskiy, M.5
Karplus, M.6
Cole, P.A.7
Kuriyan, J.8
-
24
-
-
34249904963
-
Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD
-
Perdih A, Kotnik M, Hodoscek M, Solmajer T. Targeted molecular dynamics simulation studies of binding and conformational changes in E. coli MurD. Proteins 2007;68:243-254.
-
(2007)
Proteins
, vol.68
, pp. 243-254
-
-
Perdih, A.1
Kotnik, M.2
Hodoscek, M.3
Solmajer, T.4
-
25
-
-
44949190466
-
Detailed conformational dynamics of juxtamembrane region and activation loop in c-Kit kinase activation process
-
Zou J, Wang YD, Ma FX, Xiang ML, Shi B, Wei YQ, Yang SY. Detailed conformational dynamics of juxtamembrane region and activation loop in c-Kit kinase activation process. Proteins 2008;72:323-332.
-
(2008)
Proteins
, vol.72
, pp. 323-332
-
-
Zou, J.1
Wang, Y.D.2
Ma, F.X.3
Xiang, M.L.4
Shi, B.5
Wei, Y.Q.6
Yang, S.Y.7
-
26
-
-
41449111596
-
Catalytically requisite conformational dynamics in the mRNA-capping enzyme probed by targeted molecular dynamics
-
Swift RV, McCammon JA. Catalytically requisite conformational dynamics in the mRNA-capping enzyme probed by targeted molecular dynamics. Biochemistry 2008;47:4102-4111.
-
(2008)
Biochemistry
, vol.47
, pp. 4102-4111
-
-
Swift, R.V.1
McCammon, J.A.2
-
28
-
-
23444454552
-
The Amber biomolecular simulation programs
-
Case DA, Cheatham TE, III, Darden T, Gohlke H, Luo R, Merz KM, Jr, Onufriev A, Simmerling C, Wang B,Woods RJ. The Amber biomolecular simulation programs. J Comput Chem 2005;26:1668-1688.
-
(2005)
J Comput Chem
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham III, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz Jr, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
29
-
-
0025197061
-
pKa's of ionizable groups in proteins: Atomic detail from a continuum electrostatic model
-
Bashford D, Karplus M. pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model. Biochemistry 1990;29:10219-10225.
-
(1990)
Biochemistry
, vol.29
, pp. 10219-10225
-
-
Bashford, D.1
Karplus, M.2
-
30
-
-
0029011701
-
A second generation force field for the simulation of proteins, nucleic acids, and organic molecules
-
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM, Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA. A second generation force field for the simulation of proteins, nucleic acids, and organic molecules. J Am Chem Soc 1995;117:5179-5197.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz Jr, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
31
-
-
14244273182
-
Theory and applications of the generalized Born solvation model in macromolecular simulations
-
Tsui V, Case DA. Theory and applications of the generalized Born solvation model in macromolecular simulations. Biopolymers 2001;56:275-291.
-
(2001)
Biopolymers
, vol.56
, pp. 275-291
-
-
Tsui, V.1
Case, D.A.2
-
33
-
-
84986440341
-
Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models
-
Miyamoto S, Kollman PA. Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. J Comput Chem 1992;13:952-962.
-
(1992)
J Comput Chem
, vol.13
, pp. 952-962
-
-
Miyamoto, S.1
Kollman, P.A.2
-
34
-
-
0029170114
-
Molecular dynamics simulations on solvated biomolecular systems: The particle mesh Ewald method leads to stable trajectories of DNA. RNA, and proteins
-
Cheatham TEI, Miller JL, Fox T, Darden TA, Kollman PA. Molecular dynamics simulations on solvated biomolecular systems: The particle mesh Ewald method leads to stable trajectories of DNA. RNA, and proteins. J Am Chem Soc 1995;117:4193-4194.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 4193-4194
-
-
Cheatham, T.E.I.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
35
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, Haak JR. Molecular dynamics with coupling to an external bath. J Chem Phys 1984;81:3684-3690.
-
(1984)
J Chem Phys
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
36
-
-
0029878720
-
VMD: Visual molecular dynamics. J Mol Graph
-
Humphrey W, Dalke A, Schulten K. VMD: visual molecular dynamics. J Mol Graph 1996;14:33-38, 27-38.
-
(1996)
, vol.14
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
37
-
-
33750372649
-
Insights into the evolution of the ErbB receptor family and their ligands from sequence analysis
-
Stein RA, Staros JV. Insights into the evolution of the ErbB receptor family and their ligands from sequence analysis. BMC Evol Biol 2006;6:79.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 79
-
-
Stein, R.A.1
Staros, J.V.2
-
38
-
-
0029029617
-
Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex
-
Jeffrey PD, Russo AA, Polyak K, Gibbs E, Hurwitz J, Massague J, Pavletich NP. Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex. Nature 1995;376:313-320.
-
(1995)
Nature
, vol.376
, pp. 313-320
-
-
Jeffrey, P.D.1
Russo, A.A.2
Polyak, K.3
Gibbs, E.4
Hurwitz, J.5
Massague, J.6
Pavletich, N.P.7
-
39
-
-
33749002274
-
Impact of EGFR point mutations on the sensitivity to gefitinib: Insights from comparative structural analyses and molecular dynamics simulations
-
Liu B, Bernard B, Wu JH. Impact of EGFR point mutations on the sensitivity to gefitinib: insights from comparative structural analyses and molecular dynamics simulations. Proteins 2006;65:331-346.
-
(2006)
Proteins
, vol.65
, pp. 331-346
-
-
Liu, B.1
Bernard, B.2
Wu, J.H.3
-
40
-
-
33748066632
-
Kinetic analysis of epidermal growth factor receptor somatic mutant proteins shows increased sensitivity to the epidermal growth factor receptor tyrosine kinase inhibitor, erlotinib
-
Carey KD, Garton AJ, Romero MS, Kahler J, Thomson S, Ross S, Park F, Haley JD, Gibson N, Sliwkowski MX. Kinetic analysis of epidermal growth factor receptor somatic mutant proteins shows increased sensitivity to the epidermal growth factor receptor tyrosine kinase inhibitor, erlotinib. Cancer Res 2006;66:8163-8171.
-
(2006)
Cancer Res
, vol.66
, pp. 8163-8171
-
-
Carey, K.D.1
Garton, A.J.2
Romero, M.S.3
Kahler, J.4
Thomson, S.5
Ross, S.6
Park, F.7
Haley, J.D.8
Gibson, N.9
Sliwkowski, M.X.10
-
41
-
-
0037059757
-
Comparison of the biochemical and kinetic properties of the type 1 receptor tyrosine kinase intracellular domains: Demonstration of differential sensitivity to kinase inhibitors
-
Brignola PS, Lackey K, Kadwell SH, Hoffman C, Horne E, Carter HL, Stuart JD, Blackburn K, Moyer MB, Alligood KJ, Knight WB, Wood ER. Comparison of the biochemical and kinetic properties of the type 1 receptor tyrosine kinase intracellular domains: Demonstration of differential sensitivity to kinase inhibitors. J Biol Chem 2002;277:1576-1585.
-
(2002)
J Biol Chem
, vol.277
, pp. 1576-1585
-
-
Brignola, P.S.1
Lackey, K.2
Kadwell, S.H.3
Hoffman, C.4
Horne, E.5
Carter, H.L.6
Stuart, J.D.7
Blackburn, K.8
Moyer, M.B.9
Alligood, K.J.10
Knight, W.B.11
Wood, E.R.12
|