-
1
-
-
0026586392
-
Evidence for a second conserved arginine residue in the integrase family of recombination proteins
-
Abremski, K.E., and Hoess, R.H. (1992). Evidence for a second conserved arginine residue in the integrase family of recombination proteins. Prot. Eng. 5, 87-91.
-
(1992)
Prot. Eng.
, vol.5
, pp. 87-91
-
-
Abremski, K.E.1
Hoess, R.H.2
-
2
-
-
0022669622
-
The integrase family of site-specific recombinases: Regional similarities and global diversity
-
Argos, P., Landy, A., Abremski, K., Egan, J.B., Haggard-Ljungquist, E., Hoess, R.H., Kahn, M.L., Kalionis, B., Narayana, S.V.L., Pierson, L.S., III, Sternberg, N., and Leong, J.M. (1986). The integrase family of site-specific recombinases: regional similarities and global diversity. EMBO J. 5, 433-440.
-
(1986)
EMBO J.
, vol.5
, pp. 433-440
-
-
Argos, P.1
Landy, A.2
Abremski, K.3
Egan, J.B.4
Haggard-Ljungquist, E.5
Hoess, R.H.6
Kahn, M.L.7
Kalionis, B.8
Narayana, S.V.L.9
Pierson L.S. III10
Sternberg, N.11
Leong, J.M.12
-
3
-
-
0027422093
-
Two related recombinases are required for site-specific recombination at dif and cer in E. Coli K12
-
Blakely, G., May, G., McCulloch, R., Arciszewska, L.K., Burke, M., Lovett, S.T., and Sherratt, D.J. (1993). Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12. Cell 75, 351-361.
-
(1993)
Cell
, vol.75
, pp. 351-361
-
-
Blakely, G.1
May, G.2
McCulloch, R.3
Arciszewska, L.K.4
Burke, M.5
Lovett, S.T.6
Sherratt, D.J.7
-
5
-
-
0026240806
-
RIBBONS 2.0
-
Carson, M. (1991). RIBBONS 2.0. J. Appl. Cryst. 24, 958-961.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 958-961
-
-
Carson, M.1
-
6
-
-
0026651559
-
DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands
-
Chen, J.-W., Lee, J., and Jayaram, M. (1992). DNA cleavage in trans by the active site tyrosine during Flp recombination: switching protein partners before exchanging strands. Cell 69, 647-658.
-
(1992)
Cell
, vol.69
, pp. 647-658
-
-
Chen, J.-W.1
Lee, J.2
Jayaram, M.3
-
7
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4 (1994). The CCP4 suite: programs for protein crystallography. Acta Cryst. D50, 760-763.
-
(1994)
Acta Cryst. D
, vol.50
, pp. 760-763
-
-
-
8
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly, M.L. (1983). Solvent-accessible surfaces of proteins and nucleic acids. Science 221, 709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
9
-
-
0003079284
-
Integrase
-
J. Karn, ed. (Oxford: Oxford University Press)
-
Craigie, R., Hickman, A.B., and Engelman, A. (1995). Integrase. In HIV Volume 2, a Practical Approach, J. Karn, ed. (Oxford: Oxford University Press), pp. 53-71.
-
(1995)
HIV Volume 2, a Practical Approach
, vol.2
, pp. 53-71
-
-
Craigie, R.1
Hickman, A.B.2
Engelman, A.3
-
10
-
-
0025125851
-
The role of metal ions in the conformation of the four-way DNA junction
-
Duckett, D.R., Murchie, A.I.H., and Lilley, D.M.J. (1990). The role of metal ions in the conformation of the four-way DNA junction. EMBO J. 9, 583-590.
-
(1990)
EMBO J.
, vol.9
, pp. 583-590
-
-
Duckett, D.R.1
Murchie, A.I.H.2
Lilley, D.M.J.3
-
11
-
-
0028584269
-
Crystal structure of the catalytic domain of HIV-1 integrase: Similarity to other polynucleotidyl transferases
-
Dyda, F., Hickman, A.B., Jenkins, T.M., Engelman, A., Craigie, R., and Davies, D.R. (1994). Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases. Science 266, 1981-1986.
-
(1994)
Science
, vol.266
, pp. 1981-1986
-
-
Dyda, F.1
Hickman, A.B.2
Jenkins, T.M.3
Engelman, A.4
Craigie, R.5
Davies, D.R.6
-
12
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein-structure refinement
-
Engh, R.A., and Huber, R. (1991). Accurate bond and angle parameters for X-ray protein-structure refinement. Acta Cryst. A47, 392-400.
-
(1991)
Acta Cryst.
, vol.A47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
13
-
-
0028023453
-
Identification of an HP1 phage protein required for site-specific excision
-
Esposito, D., and Scocca, J.J. (1994). Identification of an HP1 phage protein required for site-specific excision. Mol. Microbiol. 13, 685-695.
-
(1994)
Mol. Microbiol.
, vol.13
, pp. 685-695
-
-
Esposito, D.1
Scocca, J.J.2
-
14
-
-
0029984959
-
The complete nucleotide sequence of bacteriophage HP1 DNA
-
Esposito, D., Fitzmaurice, W.P., Benjamin, R.C., Goodman, S.D., Waldman, A.S., and Scocca, J.J. (1996). The complete nucleotide sequence of bacteriophage HP1 DNA. Nucleic Acids Res. 24, 2360-2368.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2360-2368
-
-
Esposito, D.1
Fitzmaurice, W.P.2
Benjamin, R.C.3
Goodman, S.D.4
Waldman, A.S.5
Scocca, J.J.6
-
15
-
-
0025129866
-
Identification of the active site tyrosine of FIp recombinase. Possible relevance of its location to the mechanism of recombination
-
Evans, B.R., Chen, J.-W., Parsons, R.L., Bauer, T.K., Teplow, D.B., and Jayaram, M. (1990). Identification of the active site tyrosine of FIp recombinase. Possible relevance of its location to the mechanism of recombination. J. Biol. Chem. 265, 18504-18510.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18504-18510
-
-
Evans, B.R.1
Chen, J.-W.2
Parsons, R.L.3
Bauer, T.K.4
Teplow, D.B.5
Jayaram, M.6
-
16
-
-
0030818593
-
PHASES-95: A program package for the processing and analysis of diffraction data for macromolecules
-
in press
-
Furey, W., and Swaminathan, S. (1997). PHASES-95: a program package for the processing and analysis of diffraction data for macromolecules. Meth. Enzymol., in press.
-
(1997)
Meth. Enzymol.
-
-
Furey, W.1
Swaminathan, S.2
-
17
-
-
0024321864
-
Nucleotide sequence and expression of the gene for the site-specific integration protein from bacteriophage HP1 of Haemophilus influenzae
-
Goodman, S.D., and Scocca, J.J. (1989). Nucleotide sequence and expression of the gene for the site-specific integration protein from bacteriophage HP1 of Haemophilus influenzae. J. Bacteriol. 171, 4232-4240.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4232-4240
-
-
Goodman, S.D.1
Scocca, J.J.2
-
18
-
-
0028070923
-
Binding sites for bacteriophage HP1 integrase on its DNA substrates
-
Hakimi, J.M., and Scocca, J.J. (1994). Binding sites for bacteriophage HP1 integrase on its DNA substrates. J. Biol. Chem. 269, 21340-21345.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 21340-21345
-
-
Hakimi, J.M.1
Scocca, J.J.2
-
19
-
-
0030016760
-
Purification and characterization of the integrase from the Haemophilus influenzae bacteriophage HP1. Identification of a four-stranded intermediate and the order of strand exchange
-
Hakimi, J.M., and Scocca, J.J. (1996). Purification and characterization of the integrase from the Haemophilus influenzae bacteriophage HP1. Identification of a four-stranded intermediate and the order of strand exchange. Mol. Microbiol. 21, 147-158.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 147-158
-
-
Hakimi, J.M.1
Scocca, J.J.2
-
20
-
-
0024554116
-
Site-specific recombination between cloned attP and attB sites from the Haemophilus influenzae bacteriophage HP1 propagated in recombination-deficient Escherichia coli
-
Hakimi-Astumian, J., Waldman, A.S., and Scocca, J.J. (1989). Site-specific recombination between cloned attP and attB sites from the Haemophilus influenzae bacteriophage HP1 propagated in recombination-deficient Escherichia coli. J. Bacteriol. 171, 1747-1750.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 1747-1750
-
-
Hakimi-Astumian, J.1
Waldman, A.S.2
Scocca, J.J.3
-
21
-
-
0027427546
-
Complementation of bacteriophage lambda integrase mutants: Evidence for an intersubunit active site
-
Han, Y.W., Gumport, R.I., and Gardner, J.F. (1993). Complementation of bacteriophage lambda integrase mutants: evidence for an intersubunit active site. EMBO J. 12, 4577-4584.
-
(1993)
EMBO J.
, vol.12
, pp. 4577-4584
-
-
Han, Y.W.1
Gumport, R.I.2
Gardner, J.F.3
-
22
-
-
0002549697
-
Resolvases and DNA-invertases: A family of enzymes active in site-specific recombination
-
R. Kucherlaphati and G.R. Smith, eds. (Washington, D.C.: American Society for Microbiology)
-
Hatfull, G.F., and Grindley, N.D.F. (1989). Resolvases and DNA-invertases: a family of enzymes active in site-specific recombination. In Genetic Recombination, R. Kucherlaphati and G.R. Smith, eds. (Washington, D.C.: American Society for Microbiology), pp. 357-396.
-
(1989)
Genetic Recombination
, pp. 357-396
-
-
Hatfull, G.F.1
Grindley, N.D.F.2
-
23
-
-
0026760447
-
Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site
-
Hauser, M.A., and Scocca, J.J. (1992). Site-specific integration of the Haemophilus influenzae bacteriophage HP1. Identification of the points of recombinational strand exchange and the limits of the host attachment site. J. Biol. Chem. 267, 6859-6864.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 6859-6864
-
-
Hauser, M.A.1
Scocca, J.J.2
-
24
-
-
0026095584
-
Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
-
Hendrickson, W.A. (1991). Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science 254, 51-58.
-
(1991)
Science
, vol.254
, pp. 51-58
-
-
Hendrickson, W.A.1
-
25
-
-
0027991446
-
The FSSP database of structurally aligned protein fold families
-
Holm, L., and Sander, C. (1994). The FSSP database of structurally aligned protein fold families. Nucleic Acids Res. 22, 3600-3609.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 3600-3609
-
-
Holm, L.1
Sander, C.2
-
26
-
-
0026206788
-
Sparse matrix sampling: A screening method for crystallization of proteins
-
Jancarik, J., and Kim, S.H. (1991). Sparse matrix sampling: a screening method for crystallization of proteins. J. Appl. Cryst. 24, 409-411.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 409-411
-
-
Jancarik, J.1
Kim, S.H.2
-
27
-
-
0028180387
-
Phosphoryl transfer in Flp recombination: A templateforstrand transfer mechanisms
-
Jayaram, M. (1994). Phosphoryl transfer in Flp recombination: a templateforstrand transfer mechanisms. Trends Biol. Sci. 19, 78-82.
-
(1994)
Trends Biol. Sci.
, vol.19
, pp. 78-82
-
-
Jayaram, M.1
-
28
-
-
0029396763
-
Return to sobriety after the catalytic party
-
Jayaram, M., and Lee, J. (1995). Return to sobriety after the catalytic party. Trends Genet. 11, 432-433.
-
(1995)
Trends Genet.
, vol.11
, pp. 432-433
-
-
Jayaram, M.1
Lee, J.2
-
29
-
-
0001134318
-
Site-specific recombinases and their interactions with DNA
-
D.M.J. Lilley, ed. (Oxford: IRL Press)
-
Johnson, R.C. (1995). Site-specific recombinases and their interactions with DNA. In DNA-Protein: Structural Interactions, D.M.J. Lilley, ed. (Oxford: IRL Press), pp. 141-176.
-
(1995)
DNA-protein: Structural Interactions
, pp. 141-176
-
-
Johnson, R.C.1
-
30
-
-
0029109468
-
Protein-protein interactions: A review of protein dimer structures
-
Jones, S., and Thornton, J.M. (1995). Protein-protein interactions: a review of protein dimer structures. Prog. Biophys. Mol. Biol. 63, 31-65.
-
(1995)
Prog. Biophys. Mol. Biol.
, vol.63
, pp. 31-65
-
-
Jones, S.1
Thornton, J.M.2
-
31
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Cryst. A47, 110-119.
-
(1991)
Acta Cryst. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
32
-
-
0025223119
-
Mapping of a higher order protein-DNA complex: Two kinds of long-range interactions in λ attL
-
Kim, S., Moitoso de Vargas, L., Nunes-Düby, S.E., and Landy, A. (1990). Mapping of a higher order protein-DNA complex: two kinds of long-range interactions in λ attL. Cell 63, 773-781.
-
(1990)
Cell
, vol.63
, pp. 773-781
-
-
Kim, S.1
Moitoso De Vargas, L.2
Nunes-Düby, S.E.3
Landy, A.4
-
33
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24, 946-950.
-
(1991)
J. Appl. Cryst.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
34
-
-
0024386798
-
Dynamic, structural, and regulatory aspects of λ site-specific recombination
-
Landy, A. (1989). Dynamic, structural, and regulatory aspects of λ site-specific recombination. Annu. Rev. Biochem. 58, 913-949.
-
(1989)
Annu. Rev. Biochem.
, vol.58
, pp. 913-949
-
-
Landy, A.1
-
35
-
-
0027435209
-
Mechanistic and structural complexity in the site-specific recombination pathways of Int and FLP
-
Landy, A. (1993). Mechanistic and structural complexity in the site-specific recombination pathways of Int and FLP. Curr. Opin. Genet. Dev. 3, 699-707.
-
(1993)
Curr. Opin. Genet. Dev.
, vol.3
, pp. 699-707
-
-
Landy, A.1
-
36
-
-
0028115776
-
Three-dimensional structure of the 67K N-terminal fragment of E. Coli DNA topoisomerase I
-
Lima, C.D., Wang, J.C., and Mondragon, A. (1994). Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature 367, 138-146.
-
(1994)
Nature
, vol.367
, pp. 138-146
-
-
Lima, C.D.1
Wang, J.C.2
Mondragon, A.3
-
37
-
-
0024295418
-
Autonomous DNA binding domains of λ integrase recognize two different sequence families
-
Moitoso de Vargas, L., Pargellis, C.A., Hasan, N.M., Bushman, E.W., and Landy, A. (1988). Autonomous DNA binding domains of λ integrase recognize two different sequence families. Cell 54, 923-929.
-
(1988)
Cell
, vol.54
, pp. 923-929
-
-
Moitoso De Vargas, L.1
Pargellis, C.A.2
Hasan, N.M.3
Bushman, E.W.4
Landy, A.5
-
38
-
-
0000078911
-
Site-specific recombination: Integration, excision, resolution, and inversion of defined DNA segments
-
F.C. Neidhardt, ed. (Washington, D.C.: American Society for Microbiology)
-
Nash, H.A. (1996). Site-specific recombination: integration, excision, resolution, and inversion of defined DNA segments. In Escherichia coli and Salmonella. Cellular and Molecular Biology, 2nd Ed., F.C. Neidhardt, ed. (Washington, D.C.: American Society for Microbiology), pp. 2363-2376.
-
(1996)
Escherichia Coli and Salmonella. Cellular and Molecular Biology, 2nd Ed.
, pp. 2363-2376
-
-
Nash, H.A.1
-
39
-
-
0343940865
-
-
Columbia University, New York
-
Nicholls, A. (1991). A GRASP Manual. Columbia University, New York.
-
(1991)
A GRASP Manual
-
-
Nicholls, A.1
-
40
-
-
0028168871
-
λ Integrase cleaves DNA in cis
-
Nunes-Düby, S.E., Tirumalai, R.S., Dorgai, L., Yagil, E., Weisberg, R.A., and Landy, A. (1994). λ integrase cleaves DNA in cis. EMBO J. 13, 4421-4430.
-
(1994)
EMBO J.
, vol.13
, pp. 4421-4430
-
-
Nunes-Düby, S.E.1
Tirumalai, R.S.2
Dorgai, L.3
Yagil, E.4
Weisberg, R.A.5
Landy, A.6
-
41
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. Meth. Enzymol. 276, 307-326.
-
(1997)
Meth. Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
42
-
-
0025848032
-
Identification of the DNA-binding domain of the FLP recombinase
-
Pan, H., Clary, D., and Sadowski, P.D. (1991). Identification of the DNA-binding domain of the FLP recombinase. J. Biol. Chem. 266, 11347-11354.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11347-11354
-
-
Pan, H.1
Clary, D.2
Sadowski, P.D.3
-
43
-
-
0027402969
-
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
-
Ramakrishnan, V., Finch, J.T., Graziano, V., Lee, P.L., and Sweet, R.M. (1993). Crystal structure of globular domain of histone H5 and its implications for nucleosome binding. Nature 362, 219-223.
-
(1993)
Nature
, vol.362
, pp. 219-223
-
-
Ramakrishnan, V.1
Finch, J.T.2
Graziano, V.3
Lee, P.L.4
Sweet, R.M.5
-
44
-
-
0029129435
-
Structure of the bacteriophage mutransposase core: A common structural motif for DNA transposition and retroviral integration
-
Rice, P., and Mizuuchi, K. (1995). Structure of the bacteriophage Mutransposase core: a common structural motif for DNA transposition and retroviral integration. Cell 82, 209-220.
-
(1995)
Cell
, vol.82
, pp. 209-220
-
-
Rice, P.1
Mizuuchi, K.2
-
45
-
-
0022665826
-
Site-specific recombinases: Changing partners and doing the twist
-
Sadowski, P. (1986). Site-specific recombinases: changing partners and doing the twist. J. Bacteriol. 165, 341-347.
-
(1986)
J. Bacteriol.
, vol.165
, pp. 341-347
-
-
Sadowski, P.1
-
46
-
-
0027173542
-
Site-specific genetic recombination: Hops, flips, and flops
-
Sadowski, P.D. (1993). Site-specific genetic recombination: hops, flips, and flops. FASEB J. 7, 760-767.
-
(1993)
FASEB J.
, vol.7
, pp. 760-767
-
-
Sadowski, P.D.1
-
47
-
-
0029654354
-
Site-specific recombination and circular chromosome segregation
-
Sherratt, D.J., Arciszewska, L.K., Blakely, G., Colloms, S., Grant, K., Leslie, N., and McCulloch, R. (1995). Site-specific recombination and circular chromosome segregation. Phil. Trans. R. Soc. (Lond.) B 347, 37-42.
-
(1995)
Phil. Trans. R. Soc. (Lond.) B
, vol.347
, pp. 37-42
-
-
Sherratt, D.J.1
Arciszewska, L.K.2
Blakely, G.3
Colloms, S.4
Grant, K.5
Leslie, N.6
McCulloch, R.7
-
48
-
-
0028949487
-
Gatecrashers at the catalytic party
-
Stark, W.M., and Boocock, M.R. (1995). Gatecrashers at the catalytic party. Trends Genet. 11, 121-123.
-
(1995)
Trends Genet.
, vol.11
, pp. 121-123
-
-
Stark, W.M.1
Boocock, M.R.2
-
49
-
-
0002518563
-
Knowledge-based B-factor restraints for the refinement of proteins
-
Tronrud, D.E. (1996). Knowledge-based B-factor restraints for the refinement of proteins. J. Appl. Cryst. 29, 100-104.
-
(1996)
J. Appl. Cryst.
, vol.29
, pp. 100-104
-
-
Tronrud, D.E.1
-
50
-
-
0025266027
-
The stereo-chemistry of a four-way DNA junction: A theoretical study
-
von Kitzing, E., Lilley, D.M.J., and Diekmann, S. (1990). The stereo-chemistry of a four-way DNA junction: a theoretical study. Nucleic Acids Res. 18, 2671-2683.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 2671-2683
-
-
Kitzing, E.1
Lilley, D.M.J.2
Diekmann, S.3
-
51
-
-
0023151256
-
Nucleotide sequences and properties of the sites involved in lysogenic insertion of the bacteriophage HP1c1 genome into the Haemophilus influenzae chromosome
-
Waldman, A.S., Goodman, S.D., and Scocca, J.J. (1987). Nucleotide sequences and properties of the sites involved in lysogenic insertion of the bacteriophage HP1c1 genome into the Haemophilus influenzae chromosome. J. Bacteriol. 169, 238-246.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 238-246
-
-
Waldman, A.S.1
Goodman, S.D.2
Scocca, J.J.3
-
52
-
-
0022325950
-
Resolution of phase ambiguity in macromolecular crystallography
-
Wang, B.C. (1985). Resolution of phase ambiguity in macromolecular crystallography. Meth. Enzymol. 115, 90-112.
-
(1985)
Meth. Enzymol.
, vol.115
, pp. 90-112
-
-
Wang, B.C.1
-
53
-
-
0029127032
-
Crystal structure of the site-specific recombinase γδ resolvase complexed with a 34 bp cleavage site
-
Yang, W., and Steitz, T.A. (1995). Crystal structure of the site-specific recombinase γδ resolvase complexed with a 34 bp cleavage site. Cell 82, 193-207.
-
(1995)
Cell
, vol.82
, pp. 193-207
-
-
Yang, W.1
Steitz, T.A.2
|