-
1
-
-
0024935821
-
RNA splicing in yeast
-
Abelson, J. (1991). RNA splicing in yeast. Harvey Lect. 85, 1-42.
-
(1991)
Harvey Lect.
, vol.85
, pp. 1-42
-
-
Abelson, J.1
-
2
-
-
0022626134
-
Properties of a mutant Cre protein that alters the topological linkage of recombination products
-
Abremski, K., Wierzbicki, A., Frommer, B., and Hoess, R.H. (1986). Properties of a mutant Cre protein that alters the topological linkage of recombination products. J. Biol. Chem. 261, 391-396.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 391-396
-
-
Abremski, K.1
Wierzbicki, A.2
Frommer, B.3
Hoess, R.H.4
-
3
-
-
0026649231
-
Directed evolution of an RNA enzyme
-
Beaudry, A.A., and Joyce, G.F. (1992). Directed evolution of an RNA enzyme. Science 257, 635-641.
-
(1992)
Science
, vol.257
, pp. 635-641
-
-
Beaudry, A.A.1
Joyce, G.F.2
-
4
-
-
0000560681
-
Circular DNA plasmids of yeasts: Genome dynamics, protein synthesis and energetics
-
J. R. Broach, J.R. Pringle and E.W. Jones, eds. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press)
-
Broach, J.R., and Volkert, F.C. (1991). Circular DNA plasmids of yeasts: genome dynamics, protein synthesis and energetics. In The Molecular and Cellular Biology of the Yeast Saccharomyces, J. R. Broach, J.R. Pringle and E.W. Jones, eds. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 297-331.
-
(1991)
The Molecular and Cellular Biology of the Yeast Saccharomyces
, pp. 297-331
-
-
Broach, J.R.1
Volkert, F.C.2
-
5
-
-
0344110202
-
Can DNA topoisomerases be ribonucleases?
-
Burgin, A.B., Jr. (1997). Can DNA topoisomerases be ribonucleases? Cell 91, 873-874.
-
(1997)
Cell
, vol.91
, pp. 873-874
-
-
Burgin A.B., Jr.1
-
6
-
-
0017757667
-
3′-phosphatase activity in T4 polynucleotide kinase
-
Cameron, V., and Uhlenbeck, O.C. (1977). 3′-phosphatase activity in T4 polynucleotide kinase. Biochemistry 16, 5120-5126.
-
(1977)
Biochemistry
, vol.16
, pp. 5120-5126
-
-
Cameron, V.1
Uhlenbeck, O.C.2
-
7
-
-
0027176526
-
RNA. Fishing for fresh catalysts
-
Cech, T.R. (1993). RNA. Fishing for fresh catalysts. Nature 365, 204-205.
-
(1993)
Nature
, vol.365
, pp. 204-205
-
-
Cech, T.R.1
-
8
-
-
0002754552
-
Group I ribozymes: Substrate recognition, catalytic strategies, and comparative mechanistic analysis
-
F. Eckstein and D.M.J. Lilley, eds., (Berlin: Springer-Verlag)
-
Cech, T.R., and Herschlag, D. (1996). Group I ribozymes: substrate recognition, catalytic strategies, and comparative mechanistic analysis. In Nucleic Acids and Molecular Biology, F. Eckstein and D.M.J. Lilley, eds., (Berlin: Springer-Verlag) 10, 1-18.
-
(1996)
Nucleic Acids and Molecular Biology
, vol.10
, pp. 1-18
-
-
Cech, T.R.1
Herschlag, D.2
-
9
-
-
0026641669
-
Functional analysis of Box I mutations in yeast site-specific recombinases Flp and R: Pairwise complementation with recombinase variants lacking the active site tyrosine
-
Chen, J.-W., Evans, B.R., Yang, S.H., Araki, H., and Oshima, Y. (1992a). Functional analysis of Box I mutations in yeast site-specific recombinases Flp and R: pairwise complementation with recombinase variants lacking the active site tyrosine. Mol. Cell. Biol. 12, 3757-3765.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 3757-3765
-
-
Chen, J.-W.1
Evans, B.R.2
Yang, S.H.3
Araki, H.4
Oshima, Y.5
-
10
-
-
0026651559
-
DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands
-
Chen, J.-W., Lee, J., and Jayaram, M. (1992b). DNA cleavage in trans by the active site tyrosine during Flp recombination: switching protein partners before exchanging strands. Cell 69, 647-658.
-
(1992)
Cell
, vol.69
, pp. 647-658
-
-
Chen, J.-W.1
Lee, J.2
Jayaram, M.3
-
11
-
-
0028279785
-
The covalent eukaryotic topoisomerase I-DNA intermediate catalyzes pH-dependent hydrolysis and alcoholysis
-
Christiansen, K., Knudsen, B.R., and Westergaard, O. (1994). The covalent eukaryotic topoisomerase I-DNA intermediate catalyzes pH-dependent hydrolysis and alcoholysis. J. Biol. Chem. 269, 11367-11373.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 11367-11373
-
-
Christiansen, K.1
Knudsen, B.R.2
Westergaard, O.3
-
12
-
-
0030881917
-
Xer recombination in E. coli: Site-specific topoisomerase activity of the XerC and XerD recombinases
-
Cornet, F., Hallet, B., and Sherratt, D.J. (1997). Xer recombination in E. coli: site-specific topoisomerase activity of the XerC and XerD recombinases. J. Biol. Chem. 272, 21927-21931.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 21927-21931
-
-
Cornet, F.1
Hallet, B.2
Sherratt, D.J.3
-
13
-
-
0009210820
-
Evolution of DNA topology: Implications for its biological roles
-
Cozzarelli, N.R. (1992). Evolution of DNA topology: implications for its biological roles. Proc. Symp. Appl. Math. 45, 1-16.
-
(1992)
Proc. Symp. Appl. Math.
, vol.45
, pp. 1-16
-
-
Cozzarelli, N.R.1
-
14
-
-
0029037713
-
A DNA metalloenzyme with DNA ligase activity
-
Cuenoud, B., and Szostak, J.W. (1995). A DNA metalloenzyme with DNA ligase activity. Nature 375, 611-614.
-
(1995)
Nature
, vol.375
, pp. 611-614
-
-
Cuenoud, B.1
Szostak, J.W.2
-
15
-
-
0030816550
-
The integrase family of tyrosine recombinases: Evolution of a conserved active site domain
-
Esposito, D., and Scocca, J.J. (1997) The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucleic Acids Res. 25, 3605-3614.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3605-3614
-
-
Esposito, D.1
Scocca, J.J.2
-
16
-
-
0011877042
-
Chapter 15. Structures and mechanisms of selected enzymes
-
New York: W.H. Freeman and Co.
-
Fersht, A.F. (1984). Chapter 15. Structures and mechanisms of selected enzymes. In Enzyme Structure and Mechanism (New York: W.H. Freeman and Co.), pp. 426-434.
-
(1984)
Enzyme Structure and Mechanism
, pp. 426-434
-
-
Fersht, A.F.1
-
17
-
-
0030886293
-
Structure of cre recombinase complexed with DNA in a site-specific recombination synapse
-
Guo, F., Gopaul, D.N., and Van Duyne, G.D. (1997). Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature 389, 40-45.
-
(1997)
Nature
, vol.389
, pp. 40-45
-
-
Guo, F.1
Gopaul, D.N.2
Van Duyne, G.D.3
-
18
-
-
0030904786
-
Molecular organization in site-specific recombination: The catalytic domain of bacteriophage HP1 integrase at 2.7 Å resolution
-
Hickman, A.B., Waniger, S., Scocca, J.J., and Dyda F. (1997). Molecular organization in site-specific recombination: the catalytic domain of bacteriophage HP1 integrase at 2.7 Å resolution. Cell 89, 227-237.
-
(1997)
Cell
, vol.89
, pp. 227-237
-
-
Hickman, A.B.1
Waniger, S.2
Scocca, J.J.3
Dyda, F.4
-
19
-
-
0011167645
-
Mechanism of site-specific recombination: The Flp paradigm
-
F. Eckstein and D.M.J. Lilley, eds. (Springer-Verlag)
-
Jayaram, M. (1994). Mechanism of site-specific recombination: the Flp paradigm. Nucleic Acids and Mol. Biol., F. Eckstein and D.M.J. Lilley, eds. (Springer-Verlag) 8, 268-286.
-
(1994)
Nucleic Acids and Mol. Biol.
, vol.8
, pp. 268-286
-
-
Jayaram, M.1
-
20
-
-
0024476917
-
RNA evolution and the origins of life
-
Joyce, G.F. (1989). RNA evolution and the origins of life. Nature. 338, 217-224.
-
(1989)
Nature
, vol.338
, pp. 217-224
-
-
Joyce, G.F.1
-
21
-
-
2642665308
-
Nicking-closing activity associated with bacteriophage lambda Int gene product
-
Kikuchi, Y., and Nash, H.A. (1979). Nicking-closing activity associated with bacteriophage lambda Int gene product. Proc. Natl. Acad. Sci. USA 76, 3760-3764.
-
(1979)
Proc. Natl. Acad. Sci. USA
, vol.76
, pp. 3760-3764
-
-
Kikuchi, Y.1
Nash, H.A.2
-
22
-
-
0027277026
-
Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by Flp recombianse
-
Kimball, A., Lee, J., Jayaram, M.,and Tullius, T.D. (1993). Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by Flp recombianse. Biochemistry 32, 4698-4701.
-
(1993)
Biochemistry
, vol.32
, pp. 4698-4701
-
-
Kimball, A.1
Lee, J.2
Jayaram, M.3
Tullius, T.D.4
-
23
-
-
0023724432
-
Novel splicing mechnaism for the ribosomal RNA intron in the Archaebacterium Desulfurococcus mobilis
-
Kjems, J., and Garrett, R.A. (1988). Novel splicing mechnaism for the ribosomal RNA intron in the Archaebacterium Desulfurococcus mobilis. Cell 54, 693-703.
-
(1988)
Cell
, vol.54
, pp. 693-703
-
-
Kjems, J.1
Garrett, R.A.2
-
24
-
-
0031566951
-
The yeast site-specific recombinase Flp mediates alcoholysis and hydrolysis of the strand cleavage product: Mimicking the strand joining reaction with non-DNA nucleophiles
-
Knudsen, B.R., Dahlstrom, K., Westergaard, O., and Jayaram, M. (1997). The yeast site-specific recombinase Flp mediates alcoholysis and hydrolysis of the strand cleavage product: mimicking the strand joining reaction with non-DNA nucleophiles. J. Mol. Biol. 266, 93-107.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 93-107
-
-
Knudsen, B.R.1
Dahlstrom, K.2
Westergaard, O.3
Jayaram, M.4
-
25
-
-
0001656001
-
Flexibility in DNA recombination: Structure of the lambda integrase catalytic core
-
Kwon, J.K., Tirumalai, R., Landy, A., and Ellenberger, T. (1997). Flexibility in DNA recombination: structure of the lambda integrase catalytic core. Science 276, 126-131.
-
(1997)
Science
, vol.276
, pp. 126-131
-
-
Kwon, J.K.1
Tirumalai, R.2
Landy, A.3
Ellenberger, T.4
-
26
-
-
0027435209
-
Mechanistic and structural complexity in the site-specific recombination pathways of Int and FLP
-
Landy, A. (1993). Mechanistic and structural complexity in the site-specific recombination pathways of Int and FLP. Curr. Opin. Genet. Dev. 3, 699-707.
-
(1993)
Curr. Opin. Genet. Dev.
, vol.3
, pp. 699-707
-
-
Landy, A.1
-
27
-
-
0027093070
-
Functional analysis of Box II mutations in yeast site-specific recombinase Flp and R; significance of amino acid conservation within the int family and the yeast subfamily
-
Lee, J., Serre, M.C., Yang, S.H., Whang, I., Araki, H., and Oshima, Y., and Jayaram, M. (1992). Functional analysis of Box II mutations in yeast site-specific recombinase Flp and R; significance of amino acid conservation within the Int family and the yeast subfamily. J. Mol. Biol. 228, 1091-1103.
-
(1992)
J. Mol. Biol.
, vol.228
, pp. 1091-1103
-
-
Lee, J.1
Serre, M.C.2
Yang, S.H.3
Whang, I.4
Araki, H.5
Oshima, Y.6
Jayaram, M.7
-
28
-
-
0027248517
-
Mechanism of site-specific recombination: Logic of assembling the recombinase catalytic site from fractional active sites
-
Lee, J., and Jayaram, M. (1993). Mechanism of site-specific recombination: logic of assembling the recombinase catalytic site from fractional active sites. J. Biol. Chem. 268, 17564-17579.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17564-17579
-
-
Lee, J.1
Jayaram, M.2
-
29
-
-
0029088838
-
Functional roles of individual recombinase monomers in strand breakage and strand reunion during site-specific DNA recombination
-
Lee, J., and Jayaram, M. (1995). Functional roles of individual recombinase monomers in strand breakage and strand reunion during site-specific DNA recombination. J. Biol. Chem. 270, 23203-23211.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 23203-23211
-
-
Lee, J.1
Jayaram, M.2
-
30
-
-
0029993536
-
Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: Implication fora recombination mechanism
-
Lee, J., Whang, I., and Jayaram, M. (1996) Assembly and orientation of Flp recombinase active sites on two-, three-and four-armed DNA substrates: implication fora recombination mechanism. J. Mol. Biol. 257, 532-549.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 532-549
-
-
Lee, J.1
Whang, I.2
Jayaram, M.3
-
31
-
-
0028124128
-
In vitro evolution of new ribozymes with polynucleotide kinase activity
-
Lorsch, J.R., and Szostak, J.W. (1994). In vitro evolution of new ribozymes with polynucleotide kinase activity. Nature 371, 31-36.
-
(1994)
Nature
, vol.371
, pp. 31-36
-
-
Lorsch, J.R.1
Szostak, J.W.2
-
32
-
-
9844256088
-
A bacterial group II intron encoding reverse transcriptase, maturase and DNA endonuclease activities: Biochemical demonstration of maturase activity and insertion of new genetic information within the intron
-
Matsuura, M., Saldhana, R., Ma, H., Wank, H., Yang, J., Mohr, G., Cavanagh, S., Dunny, G., Belfort, M., and Lambowitz, A. (1997). A bacterial group II intron encoding reverse transcriptase, maturase and DNA endonuclease activities: biochemical demonstration of maturase activity and insertion of new genetic information within the intron. Genes Dev. 11, 2910-2924.
-
(1997)
Genes Dev.
, vol.11
, pp. 2910-2924
-
-
Matsuura, M.1
Saldhana, R.2
Ma, H.3
Wank, H.4
Yang, J.5
Mohr, G.6
Cavanagh, S.7
Dunny, G.8
Belfort, M.9
Lambowitz, A.10
-
33
-
-
0026748245
-
Ligation activity of FLP recombinase: The strand ligation activity of a site-specific recombinase using an activated DNA substrate
-
Pan G., and Sadowski, P.D. (1992). Ligation activity of FLP recombinase: the strand ligation activity of a site-specific recombinase using an activated DNA substrate. J. Biol. Chem. 267, 12397-12399.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 12397-12399
-
-
Pan, G.1
Sadowski, P.D.2
-
34
-
-
0027159168
-
Mechanism of cleavage and ligation by FLP recombinase: Classification of mutations in FLP protein by in vitro complementation analysis
-
Pan, G., Luetke, K., and Sadowski, P.D. (1993). Mechanism of cleavage and ligation by FLP recombinase: classification of mutations in FLP protein by in vitro complementation analysis. Mol. Cell. Biol. 13, 3167-3175.
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 3167-3175
-
-
Pan, G.1
Luetke, K.2
Sadowski, P.D.3
-
35
-
-
0023708318
-
Step-arrest mutants of Flp recombinase: Implications for the catalytic mechanism of DNA recombination
-
Parsons, R.L., Prasad, P.V., Harshey, R.M., and Jayaram, M. (1988). Step-arrest mutants of Flp recombinase: implications for the catalytic mechanism of DNA recombination. Mol. Cell. Biol. 8, 3303-3310.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 3303-3310
-
-
Parsons, R.L.1
Prasad, P.V.2
Harshey, R.M.3
Jayaram, M.4
-
36
-
-
0025264936
-
Functional analyses of Arg-308 mutants of Flp recombinase: Possible role of Arg-308 in coupling substrate binding to catalysis
-
Parsons, R.L., Evans, B.R., Zheng, L., and Jayaram, M. (1990). Functional analyses of Arg-308 mutants of Flp recombinase: possible role of Arg-308 in coupling substrate binding to catalysis. J. Biol. Chem. 265, 4527-4533.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 4527-4533
-
-
Parsons, R.L.1
Evans, B.R.2
Zheng, L.3
Jayaram, M.4
-
37
-
-
0020710638
-
Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease
-
Peebles, C.L., Gegenheimer, P., and Abelson, J. (1983). Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32, 525-536.
-
(1983)
Cell
, vol.32
, pp. 525-536
-
-
Peebles, C.L.1
Gegenheimer, P.2
Abelson, J.3
-
38
-
-
0023322410
-
Mutations in the 2-micron circle site-specific recombinase that abolish recombination without affecting substrate recognition
-
Prasad, P.V., Young, L.J., and Jayaram, M. (1987). Mutations in the 2-micron circle site-specific recombinase that abolish recombination without affecting substrate recognition. Proc. Natl. Acad. Sci. USA 84, 2189-2193.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 2189-2193
-
-
Prasad, P.V.1
Young, L.J.2
Jayaram, M.3
-
39
-
-
0026701381
-
Reactions between half- and full-FLP recombination target sites. A model system for analyzing early steps in FLP protein-mediated site-specific recombination
-
Qian, X.-H., Inman, R.B., and Cox, M.M. (1992). Reactions between half-and full-FLP recombination target sites. A model system for analyzing early steps in FLP protein-mediated site-specific recombination. J. Biol. Chem. 267, 7794-7805.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7794-7805
-
-
Qian, X.-H.1
Inman, R.B.2
Cox, M.M.3
-
40
-
-
0027173542
-
Site-specific genetic recombination: Hops, flips, and flops
-
Sadowski, P.D. (1993). Site-specific genetic recombination: hops, flips, and flops. FASEB J. 7, 760-767.
-
(1993)
FASEB J.
, vol.7
, pp. 760-767
-
-
Sadowski, P.D.1
-
41
-
-
0003903343
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
42
-
-
0031310666
-
Site-specific ribonuclease activity of eukaryotic DNA topoisomerase I
-
Sekiguchi, J., and Shuman, S. (1997). Site-specific ribonuclease activity of eukaryotic DNA topoisomerase I. Mol. Cell 1, 89-97.
-
(1997)
Mol. Cell
, vol.1
, pp. 89-97
-
-
Sekiguchi, J.1
Shuman, S.2
-
43
-
-
0026622965
-
Half-site recombinations mediated by yeast site-specific recombinases Flp and R
-
Serre, M.C., Evans, B.R., Araki, H., Oshima, Y., and Jayaram, M. (1992). Half-site recombinations mediated by yeast site-specific recombinases Flp and R. J. Mol. Biol. 225, 621-642.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 621-642
-
-
Serre, M.C.1
Evans, B.R.2
Araki, H.3
Oshima, Y.4
Jayaram, M.5
-
44
-
-
0030817595
-
Crystal structure of the site-specific recombinase, XerD
-
Subramanya, H.S., Arciszewska, L.K., Baker, R.A., Bird, L.E., Sheratt, D.J., and Wigley, D.B. (1997). Crystal structure of the site-specific recombinase, XerD. EMBO J. 16, 5178-5187.
-
(1997)
EMBO J.
, vol.16
, pp. 5178-5187
-
-
Subramanya, H.S.1
Arciszewska, L.K.2
Baker, R.A.3
Bird, L.E.4
Sheratt, D.J.5
Wigley, D.B.6
-
45
-
-
0029792919
-
An RNA topoisomerase
-
Wang, H., Di Gate, R.J., and Seeman, N.C. (1996). An RNA topoisomerase. Proc. Natl. Acad. Sci. USA 93, 9477-9482.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9477-9482
-
-
Wang, H.1
Di Gate, R.J.2
Seeman, N.C.3
-
46
-
-
0029931406
-
Efficient integration of an intron RNA into double-stranded DNA by reverse splicing
-
Yang, J., Zimmerly, S., Perlman, P.S., and Lambowitz, A.M. (1996). Efficient integration of an intron RNA into double-stranded DNA by reverse splicing. Nature 381, 280-281.
-
(1996)
Nature
, vol.381
, pp. 280-281
-
-
Yang, J.1
Zimmerly, S.2
Perlman, P.S.3
Lambowitz, A.M.4
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