-
1
-
-
0037232147
-
Identification of Candida spp. by randomly amplified polymorphic DNA and differentiation between C. albicans and C. dubliniensis by direct PCR methods
-
Bautista-Muñoz C, Boldo XM, Villa-Tanaca L, Hernández- Rodríguez C 2003. Identification of Candida spp. by randomly amplified polymorphic DNA and differentiation between C. albicans and C. dubliniensis by direct PCR methods. J Clin Microbiol 41: 414-420.
-
(2003)
J Clin Microbiol
, vol.41
, pp. 414-420
-
-
Bautista-Muñoz, C.1
Boldo, X.M.2
Villa-Tanaca, L.3
Hernández-Rodríguez, C.4
-
3
-
-
0347823003
-
MatGAT: An application that generates similarity/identity matrices using protein or DNA sequences
-
Campanella JJ, Bitincka L, Smalley J 2003. MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences. BMC Bioinformatics 4: 29.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 29
-
-
Campanella, J.J.1
Bitincka, L.2
Smalley, J.3
-
4
-
-
0037080207
-
Antiretroviral therapy with protease inhibitors has an early, immune reconstitution-independent beneficial effect on Candida virulence and oral candidiasis in human immunodeficiency virus-infected subjects
-
Cassone A, Tacconelli E, De Bernardis F, Tumbarello M, Torosantucci A, Chiani P, Cauda R 2002. Antiretroviral therapy with protease inhibitors has an early, immune reconstitution-independent beneficial effect on Candida virulence and oral candidiasis in human immunodeficiency virus-infected subjects. J Infect Dis 185: 188-195.
-
(2002)
J Infect Dis
, vol.185
, pp. 188-195
-
-
Cassone, A.1
Tacconelli, E.2
de Bernardis, F.3
Tumbarello, M.4
Torosantucci, A.5
Chiani, P.6
Cauda, R.7
-
5
-
-
0000507749
-
-
National Biomedical Research Foundation, Silver Springs, Maryland
-
Dayhoff MO 1979. Atlas of protein sequence and structure, vol. 5, Suppl. 3, National Biomedical Research Foundation, Silver Springs, Maryland, p. 353-358.
-
(1979)
Atlas of protein sequence and structure
, vol.5
, Issue.SUPPL. 3
, pp. 353-358
-
-
Dayhoff, M.O.1
-
6
-
-
33745736295
-
Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution
-
Dujon B 2006. Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet 22: 375-387.
-
(2006)
Trends Genet
, vol.22
, pp. 375-387
-
-
Dujon, B.1
-
7
-
-
0036084361
-
The PROSITE database
-
Falquet L, Pagni M, Bucher P, Hulo N, Sigrist CJ, Hofmann K, Bairoch A 2002. The PROSITE database. Nucleic Acids Res 30: 235-238.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 235-238
-
-
Falquet, L.1
Pagni, M.2
Bucher, P.3
Hulo, N.4
Sigrist, C.J.5
Hofmann, K.6
Bairoch, A.7
-
8
-
-
0036081594
-
Can- dida albicans hyphal formation and the expression of the Efg1-regulated proteinases Sap4 to Sap6 are required for the invasion of parenchymal organs
-
Felk A, Kretschmar M, Albrecht A, Schaller M, Beinhauer S, Nichterlein T, D Sanglard D, Korting HC, Schäfer W, Hube B 2002. Candida albicans hyphal formation and the expression of the Efg1-regulated proteinases Sap4 to Sap6 are required for the invasion of parenchymal organs. Infect Immun 70: 3689-3700.
-
(2002)
Infect Immun
, vol.70
, pp. 3689-3700
-
-
Felk, A.1
Kretschmar, M.2
Albrecht, A.3
Schaller, M.4
Beinhauer, S.5
Nichterlein, T.6
D sanglard, D.7
Korting, H.C.8
Schäfer, W.9
Hube, B.10
-
10
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch WM 1970. Distinguishing homologous from analogous proteins. Syst Zool 19: 99-113.
-
(1970)
Syst Zool
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
11
-
-
33845452848
-
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
-
Fitzpatrick D, Logue ME, Stajich JE, Butler G 2006. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6: 99.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 99
-
-
Fitzpatrick, D.1
Logue, M.E.2
Stajich, J.E.3
Butler, G.4
-
12
-
-
0030464460
-
SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny
-
Galtier N, Gouy M, Gautier C 1996. SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
13
-
-
0031956886
-
Candida dubliniensis: Phylogeny and putative virulence factors
-
Gilfillan GD, Sullivan DJ, Haynes K, Parkinson T, Coleman DC, Gow NAR 1998. Candida dubliniensis: phylogeny and putative virulence factors. Microbiology 144: 829-838.
-
(1998)
Microbiology
, vol.144
, pp. 829-838
-
-
Gilfillan, G.D.1
Sullivan, D.J.2
Haynes, K.3
Parkinson, T.4
Coleman, D.C.5
Gow, N.A.R.6
-
14
-
-
0023481280
-
A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli
-
Hoffman CS, Winston F 1987. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57: 267-272.
-
(1987)
Gene
, vol.57
, pp. 267-272
-
-
Hoffman, C.S.1
Winston, F.2
-
15
-
-
0035044601
-
Characterization of agglutinin-like sequence genes from non-albicans Candida and phylogenetic analysis of the ALS family
-
Hoyer LL, Fundyga R, Hecht JE, Kapteyn JC, Klis FM, Arnold J 2001. Characterization of agglutininlike sequence genes from non-albicans Candida and phylogenetic analysis of the ALS family. Genetics 157: 1555-1567.
-
(2001)
Genetics
, vol.157
, pp. 1555-1567
-
-
Hoyer, L.L.1
Fundyga, R.2
Hecht, J.E.3
Kapteyn, J.C.4
Klis, F.M.5
Arnold, J.6
-
16
-
-
0027940569
-
Expression of seven members of the gene family encoding secretory aspartyl proteinases in Candida albicans
-
Hube B, Monod M, Schofield DA, Brown AJP, Gow NAR 1994. Expression of seven members of the gene family encoding secretory aspartyl proteinases in Candida albicans. Mol Microbiol 14: 87-99.
-
(1994)
Mol Microbiol
, vol.14
, pp. 87-99
-
-
Hube, B.1
Monod, M.2
Schofield, D.A.3
Brown, A.J.P.4
Gow, N.A.R.5
-
17
-
-
0011747192
-
Extracellular hydrolases
-
In RA Calderone, ASM Press, Washington DC
-
Hube B, Naglik JR 2002. Extracellular hydrolases. In RA Calderone, Candida and candidiasis, ASM Press, Washington DC, p. 107-122.
-
(2002)
Candida and candidiasis
, pp. 107-122
-
-
Hube, B.1
Naglik, J.R.2
-
18
-
-
31144442097
-
Distribution of secreted aspartyl proteinase using a polymerase chain reaction assay with SAP specific primers in Candida albicans isolates
-
Kalkanci A, Bozdayi G, Biri A, Kustimur S 2005. Distribution of secreted aspartyl proteinase using a polymerase chain reaction assay with SAP specific primers in Candida albicans isolates. Folia Microbiol 50: 409-413.
-
(2005)
Folia Microbiol
, vol.50
, pp. 409-413
-
-
Kalkanci, A.1
Bozdayi, G.2
Biri, A.3
Kustimur, S.4
-
19
-
-
34250617570
-
A family of glycosylphosphatidylinositol-linked aspartyl proteases is required for virulence of Candida glabrata
-
Kaur R, Ma B, Cormack BP 2007. A family of glycosylphosphatidylinositol-linked aspartyl proteases is required for virulence of Candida glabrata. Proc Natl Acad Sci USA 104: 7628-7633.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7628-7633
-
-
Kaur, R.1
Ma, B.2
Cormack, B.P.3
-
20
-
-
23844501292
-
Yapsins are a family of aspartyl protease required for cell wall integrity in Saccharomyces cerevisiae
-
Krysan DJ, Ting EL, Abeijon C, Kroos L, Fuller RS 2005. Yapsins are a family of aspartyl protease required for cell wall integrity in Saccharomyces cerevisiae. Eukaryot Cell 4: 1364-1374.
-
(2005)
Eukaryot Cell
, vol.4
, pp. 1364-1374
-
-
Krysan, D.J.1
Ting, E.L.2
Abeijon, C.3
Kroos, L.4
Fuller, R.S.5
-
21
-
-
0034965228
-
Evidence for a more recently evolved clade within a Candida albicans North American population
-
Lott TJ, Effat MM 2001. Evidence for a more recently evolved clade within a Candida albicans North American population. Microbiology 147: 1687-1692.
-
(2001)
Microbiology
, vol.147
, pp. 1687-1692
-
-
Lott, T.J.1
Effat, M.M.2
-
22
-
-
0028345371
-
A fourth secreted aspartyl proteinase gene (SAP4) and a CARE2 repetitive element are located upstream of the SAP1 gene in Candida albicans
-
Miyasaki SH, White TC, Agabian N 1994. A fourth secreted aspartyl proteinase gene (SAP4) and a CARE2 repetitive element are located upstream of the SAP1 gene in Candida albicans. J Bacteriol 176: 1702-1710.
-
(1994)
J Bacteriol
, vol.176
, pp. 1702-1710
-
-
Miyasaki, S.H.1
White, T.C.2
Agabian, N.3
-
23
-
-
0031765521
-
Differential regulation of SAP8 and SAP9, which encode two new members of the secreted aspartic proteinase family in Candida albicans
-
Monod M, Hube B, Hess D, Sanglard D 1998. Differential regulation of SAP8 and SAP9, which encode two new members of the secreted aspartic proteinase family in Candida albicans. Microbiology 144: 2731-2737.
-
(1998)
Microbiology
, vol.144
, pp. 2731-2737
-
-
Monod, M.1
Hube, B.2
Hess, D.3
Sanglard, D.4
-
24
-
-
0028233073
-
Multiplicity of genes encoding secreted aspartic proteinases in Candida species
-
Monod M, Togni G, Hube B, Sanglard D 1994. Multiplicity of genes encoding secreted aspartic proteinases in Candida species. Mol Microbiol 13: 357-368.
-
(1994)
Mol Microbiol
, vol.13
, pp. 357-368
-
-
Monod, M.1
Togni, G.2
Hube, B.3
Sanglard, D.4
-
25
-
-
0001990631
-
Emergence of Non-Candida albicans Candida species as pathogen
-
In RA Calderone, ASM Press, Washington DC
-
Moran GP, Derek JS, Coleman DC 2002. Emergence of Non-Candida albicans Candida species as pathogen. In RA Calderone, Candida and candidiasis, ASM Press, Washington DC, p. 37.
-
(2002)
Candida and candidiasis
, pp. 37
-
-
Moran, G.P.1
Derek, J.S.2
Coleman, D.C.3
-
26
-
-
4544365934
-
Candida albicans proteinases and host/pathogen Interactions
-
Naglik J, Albrecht A, Bader O, Hube B 2004. Candida albicans proteinases and host/pathogen Interactions. Cell Microbiol 6: 915-926.
-
(2004)
Cell Microbiol
, vol.6
, pp. 915-926
-
-
Naglik, J.1
Albrecht, A.2
Bader, O.3
Hube, B.4
-
27
-
-
0141789642
-
Candida albicans secreted aspartyl proteinases in virulence and pathogenesis
-
Naglik JR, Challacombe SJ, Hube B 2003. Candida albicans secreted aspartyl proteinases in virulence and pathogenesis. Microbiol Mol Biol Rev 67: 400-428.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 400-428
-
-
Naglik, J.R.1
Challacombe, S.J.2
Hube, B.3
-
28
-
-
84869293755
-
Evolution of pathogenic Candida species
-
In F Baquero, C Nombela, GH Cassell, JA Gutiérrez-Fuentes, ASM Press, Washington DC
-
Odds FC 2008. Evolution of pathogenic Candida species. In F Baquero, C Nombela, GH Cassell, JA Gutiérrez-Fuentes, Evolutionary biology of bacterial and fungal pathogens, ASM Press, Washington DC, p. 567-580.
-
(2008)
Evolutionary biology of bacterial and fungal pathogens
, pp. 567-580
-
-
Odds, F.C.1
-
29
-
-
33846466508
-
Epidemiology of invasive candidiasis: A persistent public health problem
-
Pfaller MA, Diekema DJ 2007. Epidemiology of invasive candidiasis: a persistent public health problem. Clin Microbiol Rev 20: 133-163.
-
(2007)
Clin Microbiol Rev
, vol.20
, pp. 133-163
-
-
Pfaller, M.A.1
Diekema, D.J.2
-
30
-
-
0034844346
-
Secreted aspartic proteases of Candida albicans, Candida tropicalis, Candida parapsilosis and Candida lusitaniae. Inhibition with peptidomimetic inhibitors
-
Pichova I, Pavlickova L, Dostal J, Dolejsi E, Hruskova-Heidingsfel dova O, Weber J, Ruml T, Soucek M 2001. Secreted aspartic proteases of Candida albicans, Candida tropicalis, Candida parapsilosis and Candida lusitaniae. Inhibition with peptidomimetic inhibitors. Eur J Biochem 268: 2669-2677.
-
(2001)
Eur J Biochem
, vol.268
, pp. 2669-2677
-
-
Pichova, I.1
Pavlickova, L.2
Dostal, J.3
Dolejsi, E.4
Hruskova-Heidingsfeldova, O.5
Weber, J.6
Ruml, T.7
Soucek, M.8
-
31
-
-
0028971143
-
MatInd and MatInspector -new fast and versatile tools for detection of consensus matches in nucleotide sequence data
-
Quandt K, French K, Kara H, Wingender E, Werner T 1995. MatInd and MatInspector -new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res 23: 4878-4884.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
French, K.2
Kara, H.3
Wingender, E.4
Werner, T.5
-
32
-
-
0037090110
-
Evidence for differential expression of Candida albicans virulence genes during oral infection in intact and human immunodeficiency virus type 1-transgenic mice
-
Ripeau JS, Fiorillo M, Aumont F, Belhumeur P, de Repentigny L 2002. Evidence for differential expression of Candida albicans virulence genes during oral infection in intact and human immunodeficiency virus type 1-transgenic mice. J Infect Dis 185: 1094-1102.
-
(2002)
J Infect Dis
, vol.185
, pp. 1094-1102
-
-
Ripeau, J.S.1
Fiorillo, M.2
Aumont, F.3
Belhumeur, P.4
de Repentigny, L.5
-
33
-
-
0004136246
-
-
3rd ed., Cold Spring Harbor Laboratory Press, New York, section 1.31-1.32
-
Sambrook J, Rusell DW 2001. Molecular cloning: a laboratory manual, 3rd ed., Cold Spring Harbor Laboratory Press, New York, section 1.31-1.32.
-
(2001)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Rusell, D.W.2
-
34
-
-
17644403191
-
Candida albicans-secreted aspartic proteinases modify the epithelial cytokine response in an in vitro model of vaginal candidiasis
-
Schaller M, Korting HC, Borelli C, Hamm G, Hube B 2005. Candida albicans-secreted aspartic proteinases modify the epithelial cytokine response in an in vitro model of vaginal candidiasis. Infect Immun 73: 2758-2765.
-
(2005)
Infect Immun
, vol.73
, pp. 2758-2765
-
-
Schaller, M.1
Korting, H.C.2
Borelli, C.3
Hamm, G.4
Hube, B.5
-
35
-
-
0041439950
-
Hydrolytic gene expression during oroesophageal and gastric candidiasis in immunocompetent and immunodeficient gnotobiotic mice
-
Schofield DA, Westwater C, Warner T, Nicholas PJ, Paulling EE, Balish E 2003. Hydrolytic gene expression during oroesophageal and gastric candidiasis in immunocompetent and immunodeficient gnotobiotic mice. J Infect Dis 188: 591-599.
-
(2003)
J Infect Dis
, vol.188
, pp. 591-599
-
-
Schofield, D.A.1
Westwater, C.2
Warner, T.3
Nicholas, P.J.4
Paulling, E.E.5
Balish, E.6
-
36
-
-
14344273992
-
Prevalence of small inversions in yeast gene order evolution
-
Seoighe C, Federspiel N, Jones T, Hansen N, Bivolarovic V, Surzycki R, Tamse R, Komp C, Huizar L, Davis RW, Scherer S, Tait E, Shaw DJ, Harris D, Murphy L, Oliver K, Taylor K, Rajandream MA, Barrell BG, Wolfe KH 2000. Prevalence of small inversions in yeast gene order evolution. Proc Natl Acad Sci USA 97: 14433-14437.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14433-14437
-
-
Seoighe, C.1
Federspiel, N.2
Jones, T.3
Hansen, N.4
Bivolarovic, V.5
Surzycki, R.6
Tamse, R.7
Komp, C.8
Huizar, L.9
Davis, R.W.10
Scherer, S.11
Tait, E.12
Shaw, D.J.13
Harris, D.14
Murphy, L.15
Oliver, K.16
Taylor, K.17
Rajandream, M.A.18
Barrell, B.G.19
Wolfe, K.H.20
more..
-
37
-
-
0034456391
-
Extracellular hydrolytic enzymes and their relevance during Candida albicans infections
-
Stehr F, Felk A, Kretschmar M, Schaller M, Schafer W, Hube B 2000. Extracellular hydrolytic enzymes and their relevance during Candida albicans infections. Mycoses 43: 17-21.
-
(2000)
Mycoses
, vol.43
, pp. 17-21
-
-
Stehr, F.1
Felk, A.2
Kretschmar, M.3
Schaller, M.4
Schafer, W.5
Hube, B.6
-
38
-
-
6344284641
-
Inner kinetochore of the pathogenic yeast Candida glabrata
-
Stoyan T, Carbon J 2004. Inner kinetochore of the pathogenic yeast Candida glabrata. Eukaryot Cell 3: 1154-1163.
-
(2004)
Eukaryot Cell
, vol.3
, pp. 1154-1163
-
-
Stoyan, T.1
Carbon, J.2
-
39
-
-
20444451594
-
Tracking repeats using significance and transitivity
-
Szklarczyk R, Heringa J 2004. Tracking repeats using significance and transitivity. Bioinformatics 20: 311-317.
-
(2004)
Bioinformatics
, vol.20
, pp. 311-317
-
-
Szklarczyk, R.1
Heringa, J.2
-
40
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
41
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 29: 22-28.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
42
-
-
1842579011
-
Genetic evidence for recombination in Candida albicans based on haplotype analysis
-
Tavanti A, Gow NA, Maiden MC, Odds FC, Shaw DJ 2004. Genetic evidence for recombination in Candida albicans based on haplotype analysis. Fungal Genet Biol 41: 553-562.
-
(2004)
Fungal Genet Biol
, vol.41
, pp. 553-562
-
-
Tavanti, A.1
Gow, N.A.2
Maiden, M.C.3
Odds, F.C.4
Shaw, D.J.5
-
43
-
-
0031574072
-
The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thomson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG 1997. The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thomson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
44
-
-
0029128928
-
Candida albicans secreted aspartyl proteinases: Isoenzyme pattern is determined by cell type and levels are determined by environmental actors
-
White TC, Agabian N 1995. Candida albicans secreted aspartyl proteinases: isoenzyme pattern is determined by cell type and levels are determined by environmental actors. J Bacteriol 177: 5215-5221.
-
(1995)
J Bacteriol
, vol.177
, pp. 5215-5221
-
-
White, T.C.1
Agabian, N.2
-
45
-
-
0035172588
-
Secreted aspartic proteinase family of Candida tropicalis
-
Zaugg C, Borg-Von Zepelin M, Reichard U, Sanglard D, Monod M 2001. Secreted aspartic proteinase family of Candida tropicalis. Infect Immun 69: 405-412.
-
(2001)
Infect Immun
, vol.69
, pp. 405-412
-
-
Zaugg, C.1
Borg-Von Zepelin, M.2
Reichard, U.3
Sanglard, D.4
Monod, M.5
|