Identification of Candida spp. by randomly amplified polymorphic DNA analysis and differentiation between Candida albicans and Candida dubliniensis by direct PCR methods

Journal of Clinical Microbiology

Volumn 41, Issue 1, 2003, Pages 414-420

  Bautista Muñoz, Consuelo ^a   Boldo, Xavier M ^a   Villa Tanaca, Lourdes ^a   Hernández Rodríguez, César ^a  

^a INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACID PROTEINASE; DIPEPTIDYL PEPTIDASE; OLIGONUCLEOTIDE; PROTEINASE; UNCLASSIFIED DRUG;

ANTIBIOTIC SENSITIVITY; ARTICLE; CANDIDA ALBICANS; CANDIDA DUBLINIENSIS; DNA FINGERPRINTING; FUNGAL GENE; FUNGUS IDENTIFICATION; MEASUREMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPPORTUNISTIC INFECTION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; RELIABILITY; REPRODUCIBILITY; SEQUENCE ANALYSIS; SPECIES DIFFERENTIATION; STRAIN DIFFERENCE; TECHNIQUE;

CANDIDA; CANDIDA ALBICANS; DNA, FUNGAL; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

CANDIDA; CANDIDA ALBICANS; CANDIDA DUBLINIENSIS; FUNGI;

EID: 0037232147     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.41.1.414-420.2003     Document Type: Article

References (37)

1. Andrighetto, C., E. Psomas, N. Tzanetakis, G. Suzzi, and A. Lombardi. 2000. Randomly amplified polymorphic DNA (RAPD) PCR for the identification of yeasts isolated from dairy products. Lett. Appl. Microbiol. 30:5-9.
2. Burgener-Kairuz, P., J.-P. Zuber, P. Jaunin, T. G. Buchman, J. Bille, and M. Rossier. 1994. Rapid detection and identification of Candida albicans and Torulopsis (Candida) glabrata in clinical specimens by species-specific nested PCR amplification of a cytochrome P-450 lanosterol-α-demethylase (L1A1) gene fragment. J. Clin. Microbiol. 32:1902-1907.
3. Chang, H. C., S. N. Leaw, A. H. Huang, T. L. Wu, and T. C. Chang. 2001. Rapid identification of yeasts in positive blood cultures by a multiplex PCR method. J. Clin. Microbiol. 39:3466-3471.
4. Coleman, D., D. Sullivan, B. Harrington, K. Haynes, M. Henman, D. Shanley, D. Bennett, G. Moran, C. McCreary, and L. O'Neill. 1997. Molecular and phenotypic analysis of C. dubliniensis: a recently identified species linked with oral candidosis in HIV-infected and AIDS patients. Oral Dis. 3(Suppl. 1):S96-S101.
5. Diaz-Guerra, T. M., E. Mellado, M. Cuenca-Estrella, F. Laguna, and J. L. Rodríguez Tudela. 1999. Molecular characterization by PCR-fingerprinting of C. dubliniensis strains isolated from two HIV-positive patients in Spain. Diagn. Microbiol. Infect. Dis. 35:113-119.
6. Donnelly, S. M., D. J. Sullivan, D. B. Shanley, and D. C. Coleman. 1999. Phylogenetic analysis and rapid identification of Candida dubliniensis based on analysis of ACT1 intron and exon sequences. Microbiology 145:1871-1882.
7. Dooley, D. P., M. L. Beckius, and B. S. Jeffrey. 1994. Misidentification of clinical yeast isolates by using the updated Vitek Yeast Biochemical Card. J. Clin. Microbiol. 32:2889-2892.
8. Dupont, J., S. Magnin, A. Marti, and M. Brousse. 1999. Molecular tools for identification of Penicillium starter cultures used in the food industry. Int. J. Food Microbiol. 49:109-118.
9. Einsele, H., H. Hebart, G. Roller, J. Löffler, I. Rothenhöfer, C. A. Müller, R. A. Bowden, J. van Burik, D, Engelhard, L. Kanz, and U. Schumacher. 1997. Detection and identification of fungal pathogens in blood by using molecular probes. J. Clin. Microbiol. 35:1353-1360.
10. Elie, C. M., T. J. Lott, E. Reiss, and C. J. Morrison. 1998. Rapid identification of Candida species with species-specific DNA probes. J. Clin. Microbiol. 36:3260-3265.
11. Fujita, S., B. A. Lasker, T. J. Lott, E. Reiss, and C. J. Morrison. 1995. Microtitration plate enzyme immunoassay to detect PCR-amplified DNA from Candida species in blood. J. Clin. Microbiol. 33:962-967.
12. Fujita, S.-I., Y. Senda, S. Nakaguchi, and T. Hashimoto. 2001. Multiplex PCR using internal transcribed spacer I and 2 regions for rapid detection and identification of yeasts strains. J. Clin. Microbiol. 39:3617-3622.
13. Guiver, M., K. Levi, and B. A. Oppenheim. 2001. Rapid identification of Candida species by TaqMan PCR. J. Clin. Pathol. 54:362-366.
14. Haynes, K. A., and T. J. Westerneng. 1996. Rapid identification of Candida albicans, C. glabrata, C. parapsilosis and C. krusei by species-specific PCR of large subunit ribosomal DNA. J. Med. Microbiol. 44:390-396.
15. Jordan, J. A. 1994. PCR identification of four medically important Candida species by using a single primer pair. J. Clin. Microbiol. 32:2962-2967.
16. Kanbe, T., T. Horii, T. Arishima, M. Ozeki, and A. Kikuchi. 2002. PCR-based identification of pathogenic Candida species using primer mixes specific to Candida DNA topoisomerase II genes. Yeast 19:973-989.
17. King, D., J. Rhine-Chalberg, M. A. Pfaller, S. A. Moser, and W. G. Merz. 1995. Comparison of four DNA-based methods for strain delineation of Candida lusitaniae. J. Clin. Microbiol. 33:1467-1470.
18. Kurzai, O., W. J. Heinz, D. J. Sullivan, D. C. Coleman, M. Frosch, and F. A. Muhlschlegel. 1999. Rapid PCR test for discriminating between Candida albicans and Candida dubliniensis isolates using primers derived from the pH-regulated PHR1 and PHR2 genes of C. albicans, J. Clin. Microbiol. 37:1587-1590.
19. Lehmann, P. F., D. Lin, and B. A. Lasker. 1992. Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA. J. Clin. Microbiol. 30:3249-3254.
20. Liu, D., S. Coloe, S. L. Jones, R. Baird, and J. Pedersen. 1996. Genetic speciation of Candida isolates by arbitrary primed polymerase chain reaction. FEMS Microbiol. Lett. 145:23-26.
21. Lockhart, S. R., S. Joly, C. Pujol, J. D. Sobel, M. A. Pfaller, and D. R. Soll. 1997. Development and verification of fingerprinting probes for Candida glabrata. Microbiology 143:3733-3746.
22. Mannarelli, B. M., and C. P. Kurtzman. 1998. Rapid identification of Candida albicans and other human pathogenic yeasts by using short oligonucleotides in a PCR. J. Clin. Microbiol. 36:1634-1641.
23. Melo, A. S., L. P. de Almeida, A. L. Colombo, and M. R. Briones. 1998. Evolutionary distances and identification of Candida species in clinical isolates by randomly amplified polymorphic DNA (RAPD). Mycopathologia 142:57-66.
24. Meyer, W., K. Maszewska, and T. C. Sorrell. 2001. PCR fingerprint: a convenient molecular tool to distinguish between C. dubliniensis and C. albicans. Med. Mycol. 39:185-193.
25. Molnár, O., R. Messner, H. Prillinger, U. Stahl, and E. Slavikova. 1995. Genotypic identification of Saccharomyces species using random amplified polymorphic DNA analysis. Syst. Appl. Microbiol. 18:136-145.
26. Park, S., M. Wong, S. A. Marras, E. W. Cross, T. E. Kiehn, V. Tyagi, and D. S. Perlin. 2000. Rapid identification of C dubliniensis using a species-specific molecular beacon. J. Clin. Microbiol. 38:2829-2836.
27. Shin, J. H., F. S. Nolte, B. P. Holloway, and C. J. Morrison. 1999. Rapid identification of up to three Candida species in a single reaction tube by a 5′ exonuclease assay using fluorescent DNA probes. J. Clin. Microbiol. 37:165-170.
28. Shin, J. H., F. S. Nolte, and C. J. Morrison. 1997. Rapid identification of Candida species in blood cultures by a clinically useful PCR method. J. Clin. Microbiol. 35:1454-1459.
29. Steffan, P., J. A. Vázquez, D. Biokov, C. Xu, J. D. Sobell, and R. A. Akins. 1997. Identification of Candida species by randomly amplified polymorphic DNA fingerprinting of colony lysates. J. Clin. Microbiol. 35:2031-2039.
30. Sullivan, D. J., T. J. Westerneng, K. A. Haynes, D. E. Bennet, and D. C. Coleman. 1995. Candida dubliniensis sp. nov.: phenotypic and molecular characterization of a novel species associated with oral candidosis in HIV-infected individuals. Microbiology 141:1507-1521.
31. Tamura, M., K. Watanabe, T. Imai, Y. Mikami, and K. Nishimura. 2000. New PCR primer pairs specific for Candida dubliniensis and detection of the fungi from the Candida albicans clinical isolates in Japan. Clin. Lab. 46:33-40.
32. Taylor, J. W., D. M. Geiser, A. Burt, and V. Koufopanou, 1999. The evolutionary biology and population genetics underlying fungal strains typing. Clin. Microbiol. Rev. 12:126-146.
33. Thanos, M., G. Schönian, W. Meyer, C. Schweynoch, Y. Gräser, T. G. Mitchell, W. Presber, and H.-J. Tietz. 1996. Rapid identification of Candida species by DNA fingerprinting with PCR. J. Clin. Microbiol. 34:615-621.
34. Thomson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
35. Tietz, H.-J., A. Küssner, M. Thanos, M. Pinto de Andrade, W. Presber, and G. Schönian. 1995. Phenotypic and genotypic characterization of unusual vaginal isolates of Candida albicans from Africa. J. Clin. Microbiol. 33:2462-2465.
36. Warren, N. G., and K. C. Hazen. 1999. Candida, Cryptococcus, and other yeasts of medical importance, p. 1184-1199. In P. R. Murray, E. J. Baron, M. A. Pfaller, P. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology,7th ed. American Society for Microbiology, Washington, D. C.
37. Williams, D. W., M. J. Wilson, M. A. O. Lewis, and A. J. C. Potts. 1995. Identification of Candida species by PCR and restriction fragment length polymorphic analysis of intergenic spacer regions of ribosomal DNA. J. Clin. Microbiol. 33:2476-2479.