Comparative analysis of the large fragment of the 5 untranslated region (LF-5 UTR) of serotype A foot-and-mouth disease virus field isolates from India

Virus Genes

Volumn 39, Issue 1, 2009, Pages 81-89

  Mohapatra, Jajati K ^a   Sahu, Abhipsa ^a   Barik, Sushanta K ^a   Sanyal, Aniket ^a   Pattnaik, Bramhadev ^a  

^a Indian Veterinary Research Institute Campus   (India)

Author keywords

Comparative analysis; FMD virus; LF 5 UTR; Serotype A

Indexed keywords

NUCLEOTIDE; POLYPYRIMIDINE TRACT BINDING PROTEIN; PROTEIN VP3; PYRIMIDINE;

5' UNTRANSLATED REGION; ARTICLE; BINDING SITE; CONTROLLED STUDY; FOOT AND MOUTH DISEASE VIRUS; GENE DELETION; GENE MAPPING; GENETIC CONSERVATION; GENOTYPE; INDIA; INTERNAL RIBOSOME ENTRY SITE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; VIRUS TRANSCRIPTION;

5' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; CONSERVED SEQUENCE; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; INDIA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY;

FOOT-AND-MOUTH DISEASE VIRUS; MIRIDAE;

EID: 67649502986     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-009-0366-x     Document Type: Article

References (58)

1. RK Jangra C Tosh A Sanyal D Hemadri SK Bandyopadhyay 2005 Virus Res. 112 52 59 10.1016/j.virusres.2005.03.021
2. C Tosh A Sanyal D Hemadri R Venkataraman 2002 Arch. Virol. 147 493 513 10.1007/s007050200002
3. JK Mohapatra D Hemadri TVS Rao BP Sreenivasa S Subramaniam A Sanyal TR Periyasamy NK Singh B Pattnaik R Venkataramanan 2008 Vet. Microbiol. 131 65 72 10.1016/j.vetmic.2008.02.020
4. S Forss K Strebel E Beck H Schaller 1984 Nucleic Acids Res. 12 6587 6601 10.1093/nar/12.16.6587
5. BE Clarke AL Brown KM Currey SE Newton DJ Rowlands AR Carroll 1987 Nucleic Acids Res. 15 7067 7079 10.1093/nar/15.17.7067
6. PW Mason SV Bezborodova TM Henry 2002 J. Virol. 76 9686 9694 10.1128/JVI.76.19.9686-9694.2002
7. GJ Belsham JK Brangwyn 1990 J. Virol. 64 5389 5395
8. R Kuhn N Luz E Beck 1990 J. Virol. 64 4625 4631
9. EV Pilipenko VM Blinov BK Chernov TM Dmitrieva VI Agol 1989 Nucleic Acids Res. 17 5701 5711 10.1093/nar/17.14.5701
10. A Nayak IG Goodfellow KE Woolaway J Birtley S Curry GJ Belsham 2006 J. Virol. 80 9865 9875 10.1128/JVI.00561-06
11. N Luz E Beck 1990 FEBS Lett. 269 311 314 10.1016/0014-5793(90)81182-N
12. SR Stewart BL Semler 1997 Semin. Virol. 8 242 255 10.1006/smvy.1997.0127
13. S Lopez de Quinto E Lafuente E Martinez-Salas 2001 RNA 7 1213 1226 10.1017/S1355838201010433
14. R Ramos E Martinez-Salas 1999 RNA 5 1374 1383 10.1017/S1355838299991240
15. S Biswas A Sanyal D Hemadri C Tosh JK Mohapatra R Manoj Kumar SK Bandyopadhaya 2005 Arch. Virol. 150 2217 2239 10.1007/s00705-005-0576-z
16. C Carrillo ER Tulman G Delhon Z Lu A Carreno A Vagnozzi GF Kutish DL Rock 2005 J. Virol. 79 6487 6504 10.1128/JVI.79.10.6487-6504.2005
17. JK Mohapatra A Sanyal D Hemadri C Tosh S Biswas TJ Rasool SK Bandyopadhyay B Pattnaik 2008 Virus Res. 136 16 29 10.1016/j.virusres.2008.04. 010
18. EV Pilipenko EG Victorova ST Guest VI Agol RP Roos 2001 EMBO J. 20 6899 6908 10.1093/emboj/20.23.6899
19. CE Malnou TA Poyry RJ Jackson KM Kean 2002 J. Virol. 76 10617 10626 10.1128/JVI.76.21.10617-10626.2002
20. E Martinez-Salas JC Saiz M Davila GJ Belsham E Domingo 1993 J. Virol. 67 3748 3755
21. N.J. Knowles, A.R. Samuel, in Rpt. Sess. Res. Gp. Stand. Tech. Comm. Eur. Comm. Control of FMD (FAO), Vienna, Austria, September 1994, p. 45-53 (1995)
22. JD Thompson DG Higgins TJ Gibson 1994 Nucleic Acids Res. 22 4673 4680 10.1093/nar/22.22.4673
23. K. Tamura, J. Dudley, M. Nei, S. Kumar, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. (2007). doi: 10.1093/molbev/msm092
24. N Saitou M Nei 1987 Mol. Biol. 4 406 425
25. P.H.A. Sneath, R.R. Sokal, Numerical Taxonomy (Freeman, San Francisco, 1973)
26. J Felsenstein 1985 Evol. Int. J. Org. Evol. 39 783 791 10.2307/2408678
27. K Tamura M Nei 1993 Mol. Biol. Evol. 10 512 526
28. K Tamura S Kumar 2002 Mol. Biol. Evol. 19 1727 1736
29. S.C. Ray, SimPlot for Windows 95, version 2.5 (1999), www.med.jhu.edu/deptmed/sray/download. Accessed 15 Nov 2008.
30. J Reeder R Giegerich 2004 BMC Bioinformatics 5 104 10.1186/1471-2105-5- 104
31. L Heath E van der Walt A Varsani DP Martin 2006 J. Virol. 80 11827 11832 10.1128/JVI.01100-06
32. C Escarmis J Dopazo M Davila EL Palma E Domingo 1995 Virus Res. 35 155 167 10.1016/0168-1702(94)00091-P
33. S Lopez de Quinto E Martinez-Salas 1997 J. Virol. 71 4171 4175
34. O Fernandez-Miragall S Lopez de Quinto E Martinez-Salas 2009 Virus Res. 139 172 182 10.1016/j.virusres.2008.07.009
35. S Lopez de Quinto E Martinez-Salas 2000 RNA 6 1380 1392 10.1017/S1355838200000753
36. EV Pilipenko TV Pestova VG Kolupaeva EV Khitrina AN Poperechnaya VI Agol CUT Hellen 2000 Genes Dev. 14 2028 2045
37. C Escarmis M Toja M Medina E Domingo 1992 Virus Res. 26 113 125 10.1016/0168-1702(92)90151-X
38. Q Feng H Yu Y Liu C He J Hu H Sang N Ding M Ding YW Fung L Lau AC Yu J Chen 2004 Biochem. Biophys. Res. Commun. 323 254 263 10.1016/j.bbrc.2004.08.086
39. PW Mason MJ Grubman B Baxt 2003 Virus Res. 91 9 32 10.1016/S0168-1702(02) 00257-5
40. AV Paul J Yin J Mugavero E Rieder Y Liu E Wimmer 2003 J. Biol. Chem. 278 43951 43960 10.1074/jbc.M307441200
41. O Fernandez-Miragall E Martinez-Salas 2003 RNA 9 1333 1344 10.1261/rna.5950603
42. P Serrano J Gomez E Martinez-Salas 2007 RNA 13 849 859 10.1261/rna.506607
43. BL Walter JH Nguyen E Ehrenfeld BL Semler 1999 RNA 5 1570 1585 10.1017/S1355838299991483
44. IA Stassinopoulos GJ Belsham 2001 RNA 7 114 122 10.1017/S1355838201001170
45. E Martinez-salas S Lopez de Quinto R Ramos O Fernandez-Miragall 2002 Biochimie 84 755 763 10.1016/S0300-9084(02)01408-6
46. O Fernandez-Miragall R Ramos J Ramajo E Martinez-Salas 2006 RNA 12 223 234 10.1261/rna.2153206
47. P Nissen JA Ippolito N Ban PB Moore TA Steitz 2001 Proc. Natl. Acad. Sci. USA 98 4899 4903 10.1073/pnas.081082398
48. E Martinez-Salas MP Regalado E Domingo 1996 J. Virol. 70 992 998
49. L Saleh CR Rust R Fullkrug E Beck G Bassili K Ochs M Niepman 2001 J. Gen. Virol. 82 757 763
50. O Hagenbuchle M Santer JA Steitz 1978 Cell 13 551 563 10.1016/0092-8674(78)90328-8
51. VG Kolupaeva CU Hellen IN Shatsky 1996 RNA 2 1199 1212
52. N Luz E Beck 1991 J. Virol. 65 6486 6494
53. CR Rust K Ochs K Meyer E Beck M Niepmann 1999 J. Virol. 73 6111 6113
54. A Kaminski GJ Belsham RJ Jackson 1994 EMBO J. 13 1673 1681
55. R Nicholson J Pelletier SY Le N Sonenberg 1991 J. Virol. 65 5886 5894
56. Y Kaku LS Chard T Inoue GJ Belsham 2002 J. Virol. 76 11721 11728 10.1128/JVI.76.22.11721-11728.2002
57. GJ Belsham N Sonenberg 1996 Microbiol. Rev. 60 499 511
58. G.J. Belsham, R.J. Jackson, in Translational Control of Gene Expression, ed. by N. Sonenberg, J.W.B. Hershey, M.B. Mathews (Cold Spring Harbor, New York, 2000), pp. 869-900