Differential utilization of poly(rC) binding protein 2 in translation directed by picornavirus IRES elements

RNA

Volumn 5, Issue 12, 1999, Pages 1570-1585

  Walter, Brandon L ^a   Nguyen, Joseph H C ^a   Ehrenfeld, Ellie ^b   Semler, Bert L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

5' noncoding region; Cap independent translation; Coxsackievirus; Encephalomyocarditis virus; Foot and mouth disease virus; Human rhinovirus; Poliovirus; RNA binding proteins

Indexed keywords

RNA BINDING PROTEIN;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; COXSACKIE VIRUS; FOOT AND MOUTH DISEASE VIRUS; HUMAN; HUMAN CELL; HUMAN RHINOVIRUS; NONHUMAN; PICORNAVIRUS; POLIOMYELITIS VIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEPLETION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; RIBOSOME; RNA PURIFICATION; RNA TRANSLATION; TRANSLATION INITIATION;

EID: 0032806372     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838299991483     Document Type: Article

References (68)

1. Barton DJ, Flanegan JB. 1993. Coupled translation and replication of poliovirus RNA in vitro: Synthesis of functional 3D polymerase and infectious virus. J Virol 67:822-831.
2. Blair WS, Parsley TB, Bogerd HP, Towner JS, Semler BL, Cullen BR. 1998. Utilization of a mammalian cell-based RNA binding assay to characterize the RNA binding properties of picornavirus 3C proteinases. RNA 4:215-225.
3. Blyn LB, Chen R, Semler BL, Ehrenfeld E. 1995. Host cell proteins binding to domain IV of the 5′ noncoding region of poliovirus RNA. J Virol 69:4381-4389.
4. Blyn LB, Swiderek KM, Richards O, Stahl DC, Semler BL, Ehrenfeld E. 1996. Poly(rC) binding protein 2 binds to stem-loop IV of the poliovirus RNA 5′ noncoding region: Identification by automated liquid chromatography-tandem mass spectrometry. Proc Natl Acad Sci USA 93:11115-11120.
5. Blyn LB, Towner JS, Semler BL, Ehrenfeld E. 1997. Requirement of poly(rC) binding protein 2 for translation of poliovirus RNA. J Virol 71:6243-6246.
6. Borman A, Howell MT, Patton JG, Jackson RJ. 1993. The involvement of a spliceosome component in internal initiation of human rhinovirus RNA translation. J Gen Virol 74:1775-1788.
7. Borman AM, Kirchweger R, Ziegler E, Rhoads RE, Skern T, Kean KM. 1997. elF4G and its proteolytic cleavage products: Effect on initiation of protein synthesis from capped, uncapped, and IRES-containing mRNAs. RNA 3:186-196.
8. Brown BA, Ehrenfeld E. 1979. Translation of poliovirus RNA in vitro: Changes in cleavage pattern and initiation sites by ribosomal salt wash. Virology 97:396-405.
9. Brown EA, Zajac AJ, Lemon SM. 1994. In vitro characterization of an internal ribosomal entry site (IRES) present within the 5′ non-translated region of hepatitis A virus RNA: Comparison with the 1RES of encephalomyocarditis virus. J Virol 68:1066-1074.
10. Buckley B, Ehrenfeld E. 1987. The cap-binding protein complex in uninfected and poliovirus-infected HeLa cells. J Biol Chem 262: 13599-13606.
11. Chapman NM, Tu Z, Tracy S, Gauntt CJ. 1994. An infectious cDNA copy of the genome of a non-cardiovirulent coxsackievirus B3 strain: Its complete sequence analysis and comparison to the genomes of cardiovirulent coxsackieviruses. Arch Virol 135:115-130.
12. Collier B, Goobar-Larsson L, Sokolowski M, Schwartz S. 1998. Translational inhibition in vitro of human papillomavirus type 16 L2 mRNA mediated through interaction with heterogenous ribonucleoprotein K and poly(rC)-binding proteins 1 and 2. J Biol Chem 273:22648-22656.
13. Czyzyk-Krzeska MF, Bendixen AC. 1999. Identification of the poly(C) binding protein in the complex associated with the 3′ untranslated region of erythropoietin messenger RNA. Blood 93:2111-2120.
14. del Angel RM, Papavassiliou AG, Fernandez-Tomas C, Silverstein SJ, Racaniello VR. 1989. Cell proteins bind to multiple sites within the 5' untranslated region of poliovirus RNA. Proc Natl Acad Sci USA 36:8299-8303.
15. Dildine SL, Semler BL. 1992. Conservation of RNA-protein interactions among picornaviruses. J Virol 66:4364-4376.
16. Dorner AJ, Semler BL, Jackson RJ, Hanecak R, Duprey E, Wimmer E. 1984. In vitro translation of poliovirus RNA: Utilization of internal initiation sites in reticulocyte lysate. J Virol 50:507-514.
17. Fahnestock SR, Nomura M. 1972. Activity of ribosomes containing 5S RNA with a chemically modified 3′-terminus. Proc Natl Acad Sci USA 69:363-365.
18. Futterer J, Kiss-Laszlo Z, Hohn T. 1993. Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA. Cell 73:789-802.
19. Gamarnik AV, Andino R. 1997. Two functional complexes formed by KH domain containing proteins with the 5′ noncoding region of poliovirus RNA. RNA 3:882-892.
20. Gamarnik AV, Andino R. 1998. Switch from translation to RNA replication in a positive-stranded RNA virus. Genes & Dev 12:2293-2304.
21. Ghazi F, Hughes PJ, Hyypia T, Stanway G. 1998. Molecular analysis of human parechovirus type 2 (formerly echovirus 23). J Gen Virol 79:2641-2650.
22. Graff J, Cha J, Blyn LB, Ehrenfeld E. 1998. Interaction of poly(rC) binding protein 2 with the 5′ noncoding region of hepatitis A virus RNA and its effects on translation. J Virol 72:9668-9675.
23. Gutierrez AL, Denova-Ocampo M, Racaniello VR, del Angel RM. 1997. Attenuating mutations in the poliovirus 5′ untranslated region alter its interaction with polypyrimidine tract-binding protein. J Virol 71:3826-3833.
24. Hahn H, Palmenberg AC. 1995. Encephalomyocarditis viruses with short poly(C) tracts are more virulent than their mengovirus counterparts. J Virol 69:2697-2699.
25. Haller AA, Semler BL. 1992. Linker scanning mutagenesis of the internal ribosome entry site of poliovirus RNA. J Virol 66:5075-5086.
26. Haller AA, Semler BL 1995. Stem-loop structure synergy in binding cellular proteins to the 5′ noncoding region of poliovirus RNA. Virology 206:923-934.
27. Hellen CU, Pestova TV, Litterst M, Wimmer E. 1994. The cellular polypeptide p57 (pyrimidine tract-binding protein) binds to multiple sites in the poliovirus 5′ nontranslated region. J Virol 68:941-950.
28. Hellen CU, Witherell GW, Schmid M, Shin SH, Pestova TV, Gil A, Wimmer E. 1993. A cytoplasmic 57-kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc Natl Acad Sci USA 90:7642-7646.
29. Holcik M, Liebhaber SA. 1997. Four highly stable eukaryotic mRNAs assemble 3′ untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci USA 94:2410-2414.
30. Hunt SL, Hsuan JJ, Totty N, Jackson RJ. 1999. unr, a cellular cytoplasmic RNA-binding protein with five cold-shock domains, is required for internal initiation of translation of human rhinovirus RNA. Genes & Dev 13:437-448.
31. Hunt SL, Jackson RJ. 1999. Polypyrimidine-tract binding protein (PTB) is necessary, but not sufficient, for efficient internal initiation of translation of human rhinovirus-2 RNA. RNA 5:344-359.
32. Jackson RJ, Kaminski A. 1995. Internal initiation of translation in eukaryotes: The picornavirus paradigm and beyond. RNA 1:985-1000.
33. Jang SK, Krausslich HG, Nicklin MJ, Duke GM, Palmenberg AC, Wimmer E. 1988. A segment of the 5′ nontranslated region of encephalomyocarditis virus RNA directs internal entry of ribosomes during in vitro translation. J Virol 62:2636-2643.
34. Jang SK, Pestova TV, Hellen CU, Witherell GW, Wimmer E. 1990. Cap-independent translation of picornavirus RNAs: Structure and function of the internal ribosomal entry site. Enzyme 44:292-309.
35. Jang SK, Wimmer E. 1990. Cap-independent translation of encephalomyocarditis virus RNA: Structural elements of the internal ribosomal entry site and involvement of a cellular 57-kD RNA-binding protein. Genes & Dev 4:1560-1572.
36. Kaminski A, Jackson RJ. 1998. The polypyrimidine tract binding protein (PTB) requirement for internal initiation of translation of cardiovirus RNAs is conditional rather than absolute. RNA 4:626-638.
37. Kiledjian M, Wang X, Liebhaber SA. 1995. Identification of two KH domain proteins in the alpha-globin mRNP stability complex. EMBO J 14:4357-4364.
38. Kolupaeva VG, Pestova TV, Hellen CU, Shatsky IN. 1998. Translation eukaryotic initiation factor 4G recognizes a specific structural element within the internal ribosome entry site of encephalomyocarditis virus RNA. J Biol Chem 273:18599-18604.
39. Kozak M. 1987. An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res 15:8125-8148.
40. Kozak M. 1989. The scanning model for translation: An update. J Cell Biol 108:229-241.
41. Letters H, Dejgaard K, Cells JE. 1995. Characterisation of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur J Biochem 230:447-453.
42. Luz N, Beck E. 1991. Interaction of a cellular 57-kilodalton protein with the internal translation initiation site of foot-and-mouth disease virus. J Virol 65:6486-6494.
43. Meerovitch K, Pelletier J, Sonenberg N. 1989. A cellular protein that binds to the 5′-noncoding region of poliovirus RNA: Implications for internal translation initiation. Genes & Dev 3:1026-1034.
44. Meerovitch K, Svitkin YV, Lee HS, Lejbkowicz F, Kenan DJ, Chan EK, Agol VI, Keene JD, Sonenberg N. 1993. La autoantigen enhances and corrects aberrant translation of poliovirus RNA in reticulocyte lysate. J Virol 67:3798-3807.
45. Metspalu A, Saarma M, Villems R, Ustav M, Lind A. 1978. Interaction of 5-S RNA, 5.8-S RNA, and tRNA with rat-liver ribosomal proteins. Eur J Biochem 91:73-81.
46. Meyer K, Petersen A, Niepmann M, Beck E. 1995. Interaction of eukaryotic initiation factor elF-4B with a picornavirus internal translation initiation site. J Virol 69:2819-2824.
47. Niepmann M, Petersen A, Meyer K, Beck E. 1997. Functional involvement of polypyrimidine tract-binding protein in translation initiation complexes with the internal ribosome entry site of foot-and-mouth disease virus. J Virol 71:8330-8339.
48. Parsley TB. 1998. Functional analysis of poliovirus 3CD proteinase in viral gene expression and RNA replication. Ph.D. Dissertation. Irvine, California: University of California.
49. Parsley TB, Towner JS, Blyn LB, Ehrenfeld E, Semler BL. 1997. Poly (rC) binding protein 2 forms a ternary complex with the 5′-terminal sequences of poliovirus RNA and the viral 3CD proteinase. RNA 3:1124-1134.
50. Paulding WR, Czyzyk-Krzeska MF. 1999. Regulation of tyrosine hydroxylase mRNA stability by protein-binding, pyrimidine-rich sequence in the 3′-untranslated region. J Biol Chem 274:2532-2538.
51. Pause A, Methot N, Svitkin Y, Merrick WC, Sonenberg N. 1994. Dominant negative mutants of mammalian translation initiation factor elF-4A define a critical role for elF-4F in cap-dependent and capindependent initiation of translation. EMBO J 13:1205-1215.
52. Pelletier J, Sonenberg N. 1988. Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature 334:320-325.
53. Pestova TV, Hellen CU, Shatsky IN. 1996a. Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry. Mol Cell Biol 16:6859-6869.
54. Pestova TV, Hellen CU, Wimmer E. 1991. Translation of poliovirus RNA: Role of an essential cis-acting oligopyrimidine element within the 5′ nontranslated region and involvement of a cellular 57-kilodalton protein. J Virol 65:6194-6204.
55. Pestova TV, Shatsky IN, Hellen CU. 1996b. Functional dissection of eukaryotic initiation factor 4F: The 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes. Mol Cell Biol 16:6870-6878.
56. Phillips BA, Emmert A. 1986. Modulation of the expression of polio-virus proteins in reticulocyte lysates. Virology 148:255-267.
57. Rieder E, Bunch T, Brown F, Mason PW. 1993. Genetically engineered foot-and-mouth disease viruses with poly(C) tracts of two nucleotides are virulent in mice. J Virol 67:5139-5145.
58. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning. A laboratory manual. 2nd ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
59. Scheper GC, Voorma HO, Thomas AA. 1992. Eukaryotic initiation factors-4E and -4F stimulate 5′ cap-dependent as well as internal initiation of protein synthesis. J Biol Chem 267:7269-7274.
60. Shih DS, Shin CT, Kew O, Pallansch M, Rueckert R, Kaesberg P. 1978. Cell-free synthesis and processing of the proteins of polio-virus. Proc Natl Acad Sci USA 75:5807-5811.
61. Shih DS, Shih CT, Zimmern D, Rueckert RR, Kaesberg P. 1979. Translation of encephalomyocarditis virus RNA in reticulocyte lysates: Kinetic analysis of the formation of virion proteins and a protein required for processing. J Virol 30:472-480.
62. Stanway G, Hyypia T. 1999. Parechoviruses. J Virol 73:5249-5254.
63. Stewart SR, Semler BL. 1997. RNA determinants of picornavirus cap-independent translation initiation. Semin Virol 8:242-255.
64. Svitkin YV, Meerovitch K, Lee HS, Dholakia JN, Kenan DJ, Agol VI, Sonenberg N. 1994. Internal translation initiation on poliovirus RNA: Further characterization of La function in poliovirus translation in vitro. J Virol 63:1544-1550.
65. Svitkin YV, Pestova TV, Maslova SV, Agol VI. 1988. Point mutations modify the response of poliovirus RNA to a translation initiation factor: A comparison of neurovirulent and attenuated strains. Virology 166:394-404.
66. Todd S, Towner JS, Semler BL. 1997. Translation and replication properties of the human rhinovirus genome in vivo and in vitro. Virology 229:90-97.
67. Wimmer E, Hellen CU, Cao X. 1993. Genetics of poliovirus. Annu Rev Genet 27:353-436.
68. Yueh A, Schneider RJ. 1996. Selective translation initiation by ribosome jumping in adenovirus-infected and heat-shocked cells. Genes & Dev 10:1557-1567.