메뉴 건너뛰기




Volumn 49, Issue 4, 2009, Pages 865-876

Study of MDM2 binding to p53-analogues: Affinity, helicity, and applicability to drug design

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; HYDROGEN BONDS; PHOSPHORYLATION; SOLVENTS;

EID: 66149113939     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/ci800352c     Document Type: Article
Times cited : (14)

References (38)
  • 1
    • 0035835820 scopus 로고    scopus 로고
    • Regulation of p53 function
    • Woods, D. B.; Vousden, K. H. Regulation of p53 function. Exp. Cell Res. 2001, 264, 56-66.
    • (2001) Exp. Cell Res , vol.264 , pp. 56-66
    • Woods, D.B.1    Vousden, K.H.2
  • 2
    • 0027964904 scopus 로고
    • Immunochemical analysis of the interaction of p53 with MDM2; - fine mapping of the MDM2 binding site on p53 using synthetic peptides
    • Picksley, S. M.; Vojtesek, B.; Sparks, A.; Lane, D. P. Immunochemical analysis of the interaction of p53 with MDM2; - fine mapping of the MDM2 binding site on p53 using synthetic peptides. Oncoeene 1994, 9, 2523-2529.
    • (1994) Oncoeene , vol.9 , pp. 2523-2529
    • Picksley, S.M.1    Vojtesek, B.2    Sparks, A.3    Lane, D.P.4
  • 3
    • 0028303752 scopus 로고
    • Several hydrophobic amino acids in the p53 amino-terminal domain are required for transcriptional activation, binding to mdm-2 and the adenovirus 5 E1B 55-kD protein
    • Lin, J.; Chen, J.; Elenbaas, B.; Levine, A. J. Several hydrophobic amino acids in the p53 amino-terminal domain are required for transcriptional activation, binding to mdm-2 and the adenovirus 5 E1B 55-kD protein. Genes Dev. 1994, 8, 1235-1246.
    • (1994) Genes Dev , vol.8 , pp. 1235-1246
    • Lin, J.1    Chen, J.2    Elenbaas, B.3    Levine, A.J.4
  • 7
    • 13944274061 scopus 로고    scopus 로고
    • Grasberger, B. L.; Lu, T.; Schubert, C.; Parks, D. J.; Carver, T. E.; Koblish, H. K.; Cummings, M. D.; LaFrance, L. V.; Milkiewicz, K. L.; Calvo, R. R.; Maguire, D.; Lattanze, J.; Franks, C. F.; Zhao, S.; Ramachandren, K.; Bylebyl, G. R.; Zhang, M.; Manthey, C. L.; Petrella, E. C.; Pantoliano, M. W.; Deckman, I. C.; Spurlino, J. C.; Maroney, A. C.; Tomczuk, B. E.; Molloy, C. J.; Bone, R. F. Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells. J. Med. Chem. 2005, 48, 909-912.
    • Grasberger, B. L.; Lu, T.; Schubert, C.; Parks, D. J.; Carver, T. E.; Koblish, H. K.; Cummings, M. D.; LaFrance, L. V.; Milkiewicz, K. L.; Calvo, R. R.; Maguire, D.; Lattanze, J.; Franks, C. F.; Zhao, S.; Ramachandren, K.; Bylebyl, G. R.; Zhang, M.; Manthey, C. L.; Petrella, E. C.; Pantoliano, M. W.; Deckman, I. C.; Spurlino, J. C.; Maroney, A. C.; Tomczuk, B. E.; Molloy, C. J.; Bone, R. F. Discovery and cocrystal structure of benzodiazepinedione HDM2 antagonists that activate p53 in cells. J. Med. Chem. 2005, 48, 909-912.
  • 8
    • 0034664684 scopus 로고    scopus 로고
    • Thermodynamics of p53 binding to hdm2(1-126): Effects of phosphorylation and p53 peptide length
    • Lai, Z.; Auger, K. R.; Manubay, C. M.; Copeland, R. A. Thermodynamics of p53 binding to hdm2(1-126): effects of phosphorylation and p53 peptide length. Arch. Biochem. Biovhys. 2000, 381, 278-284.
    • (2000) Arch. Biochem. Biovhys , vol.381 , pp. 278-284
    • Lai, Z.1    Auger, K.R.2    Manubay, C.M.3    Copeland, R.A.4
  • 9
    • 0037057316 scopus 로고    scopus 로고
    • Mdm-2 binding and TAF(II)31 recruitment is regulated by hydrogen bond disruption between the p53 residues Thr18 and Asp21
    • Jabbur, J. R.; Tabor, A. D.; Cheng, X. D.; Wang, H.; Uesugi, M.; Lozano, G.; Zhang, W. Mdm-2 binding and TAF(II)31 recruitment is regulated by hydrogen bond disruption between the p53 residues Thr18 and Asp21. Oncosene 2002, 21, 7100-7113.
    • (2002) Oncosene , vol.21 , pp. 7100-7113
    • Jabbur, J.R.1    Tabor, A.D.2    Cheng, X.D.3    Wang, H.4    Uesugi, M.5    Lozano, G.6    Zhang, W.7
  • 12
    • 33749378169 scopus 로고    scopus 로고
    • Determinants of specificity of MDM2 for the activation domains of p53 and p65: Proline27 disrupts the MDM2-binding motif of p53
    • Zondlo, S. C.; Lee, A. E.; Zondlo, N. J. Determinants of specificity of MDM2 for the activation domains of p53 and p65: proline27 disrupts the MDM2-binding motif of p53. Biochemistry 2006, 45, 11945-11957.
    • (2006) Biochemistry , vol.45 , pp. 11945-11957
    • Zondlo, S.C.1    Lee, A.E.2    Zondlo, N.J.3
  • 13
    • 0346455771 scopus 로고    scopus 로고
    • The MDM2-p53 interaction
    • Moll, U. M.; Petrenko, O. The MDM2-p53 interaction. Mol. Cancer Res. 2003, 1, 1001-1008.
    • (2003) Mol. Cancer Res , vol.1 , pp. 1001-1008
    • Moll, U.M.1    Petrenko, O.2
  • 14
    • 0035887213 scopus 로고    scopus 로고
    • Critical roles for the serine 20, but not the serine 15, phosphorylation site and for the polyproline domain in regulating p53 turnover
    • Dumaz, N.; Milne, D. M.; Jardine, L. J.; Meek, D. W. Critical roles for the serine 20, but not the serine 15, phosphorylation site and for the polyproline domain in regulating p53 turnover. Biochem. J. 2001, 359, 459-464.
    • (2001) Biochem. J , vol.359 , pp. 459-464
    • Dumaz, N.1    Milne, D.M.2    Jardine, L.J.3    Meek, D.W.4
  • 15
    • 0033567340 scopus 로고    scopus 로고
    • Novel phosphorylation sites of human tumour suppressor protein p53 at Ser20 and Thrl8 that disrupt the binding of mdm2 (mouse double minute 2) protein are modified in human cancers
    • Craig, A. L.; Burch, L.; Vojtesek, B.; Mikutowska, J.; Thompson, A.; Hupp, T. R. Novel phosphorylation sites of human tumour suppressor protein p53 at Ser20 and Thrl8 that disrupt the binding of mdm2 (mouse double minute 2) protein are modified in human cancers. Biochem. J. 1999, 342, 133-141.
    • (1999) Biochem. J , vol.342 , pp. 133-141
    • Craig, A.L.1    Burch, L.2    Vojtesek, B.3    Mikutowska, J.4    Thompson, A.5    Hupp, T.R.6
  • 16
    • 20444463203 scopus 로고    scopus 로고
    • Structure of free MDM2 N-terminal domain reveals conformational adjustments that accompany p53-binding
    • Uhrinova, S.; Uhrin, D.; Powers, H.; Watt, K.; Zheleva, D.; Fischer, P.; Mclnnes, C.; Barlow, P. N. Structure of free MDM2 N-terminal domain reveals conformational adjustments that accompany p53-binding. J. Mol. Biol. 2005, 350, 587-598.
    • (2005) J. Mol. Biol , vol.350 , pp. 587-598
    • Uhrinova, S.1    Uhrin, D.2    Powers, H.3    Watt, K.4    Zheleva, D.5    Fischer, P.6    Mclnnes, C.7    Barlow, P.N.8
  • 17
    • 43949084048 scopus 로고    scopus 로고
    • Quantitative lid dynamics of MDM2 reveals differential ligand binding modes of the p53-binding cleft
    • Showalter, S. A.; Bruschweiler-Li, L.; Johnson, E.; Zhang, F.; Bruschweiler, R. Quantitative lid dynamics of MDM2 reveals differential ligand binding modes of the p53-binding cleft. J. Am. Chem. Soc. 2008, 130, 6472-6478.
    • (2008) J. Am. Chem. Soc , vol.130 , pp. 6472-6478
    • Showalter, S.A.1    Bruschweiler-Li, L.2    Johnson, E.3    Zhang, F.4    Bruschweiler, R.5
  • 19
    • 0042710087 scopus 로고    scopus 로고
    • Computational Alanine Scanning To Probe Protein-Protein Interactions: A Novel Approach To Evaluate Binding Free Energies
    • Massova, I.; Kollman, P. A. Computational Alanine Scanning To Probe Protein-Protein Interactions: A Novel Approach To Evaluate Binding Free Energies. J. Am. Chem. Soc. 1999, 121, 8133-8143.
    • (1999) J. Am. Chem. Soc , vol.121 , pp. 8133-8143
    • Massova, I.1    Kollman, P.A.2
  • 20
    • 10844238962 scopus 로고    scopus 로고
    • Computational studies and peptidomimetic design for the human p53-MDM2 complex
    • Zhong, H.; Carlson, H. A. Computational studies and peptidomimetic design for the human p53-MDM2 complex. Proteins 2005, 58, 222-234.
    • (2005) Proteins , vol.58 , pp. 222-234
    • Zhong, H.1    Carlson, H.A.2
  • 21
    • 0037195144 scopus 로고    scopus 로고
    • A simple physical model for binding energy hot spots in protein-protein complexes
    • Kortemme, T.; Baker, D. A simple physical model for binding energy hot spots in protein-protein complexes. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 14116-14121.
    • (2002) Proc. Natl. Acad. Sci. U.S.A , vol.99 , pp. 14116-14121
    • Kortemme, T.1    Baker, D.2
  • 22
    • 36849011121 scopus 로고    scopus 로고
    • Modulation of the p53-MDM2 interaction by phosphorylation of Thr18 - A computational study
    • Lee, H. J.; Srinivasan, D.; Coomber, D.; Lane, D. P.; Verma, C. S. Modulation of the p53-MDM2 interaction by phosphorylation of Thr18 - A computational study. Cell Cycle 2007, 6, 2604-2611.
    • (2007) Cell Cycle , vol.6 , pp. 2604-2611
    • Lee, H.J.1    Srinivasan, D.2    Coomber, D.3    Lane, D.P.4    Verma, C.S.5
  • 23
    • 53849128197 scopus 로고    scopus 로고
    • Multiple peptide conformations give rise to similar binding affinities: Molecular simulations of p53-MDM2
    • Dastidar, S. G.; Lane, D. P.; Verma, C. Multiple peptide conformations give rise to similar binding affinities: Molecular simulations of p53-MDM2. J. Am. Chem. Soc. 2008, 130, 13514-13515.
    • (2008) J. Am. Chem. Soc , vol.130 , pp. 13514-13515
    • Dastidar, S.G.1    Lane, D.P.2    Verma, C.3
  • 24
    • 0035950792 scopus 로고    scopus 로고
    • New linear interaction method for binding affinity calculations using a continuum solvent model
    • Zhou, R. H.; Friesner, R. A.; Ghosh, A.; Rizzo, R. C.; Jorgensen, W. L.; Levy, R. M. New linear interaction method for binding affinity calculations using a continuum solvent model. J. Phys. Chem. B 2001, 105, 10388-10397.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 10388-10397
    • Zhou, R.H.1    Friesner, R.A.2    Ghosh, A.3    Rizzo, R.C.4    Jorgensen, W.L.5    Levy, R.M.6
  • 25
    • 33845493850 scopus 로고    scopus 로고
    • Protein-ligand binding affinity predictions by implicit solvent simulations: A tool for lead optimization
    • Michel, J.; Verdonk, M. L.; Essex, J. W. Protein-ligand binding affinity predictions by implicit solvent simulations: A tool for lead optimization. J. Med. Chem. 2006, 49, 7427-7439.
    • (2006) J. Med. Chem , vol.49 , pp. 7427-7439
    • Michel, J.1    Verdonk, M.L.2    Essex, J.W.3
  • 27
    • 66149105247 scopus 로고    scopus 로고
    • Accelrys, Inc, San Diego, CA
    • CHARMM, Version C33b1; Accelrys, Inc.: San Diego, CA, 2008.
    • (2008) CHARMM, Version C33b1
  • 28
    • 66149098317 scopus 로고    scopus 로고
    • MacroModel, Version 9.5; Schrodinger, LLC: New York, NY, 2005
    • MacroModel, Version 9.5; Schrodinger, LLC: New York, NY, 2005.
  • 29
    • 45749138489 scopus 로고    scopus 로고
    • MM-GB/SA rescoring of docking poses in structure-based lead optimization
    • Guimaraes, C. R. W.; Cardozo, M. MM-GB/SA rescoring of docking poses in structure-based lead optimization. J. Chem. Inf. Model. 2008, 48, 958-970.
    • (2008) J. Chem. Inf. Model , vol.48 , pp. 958-970
    • Guimaraes, C.R.W.1    Cardozo, M.2
  • 30
    • 33746872935 scopus 로고    scopus 로고
    • Accurate prediction of the relative potencies of members of a series of kinase inhibitors using molecular docking and MM-GBSA scoring
    • Lyne, P. D.; Lamb, M. L.; Saeh, J. C. Accurate prediction of the relative potencies of members of a series of kinase inhibitors using molecular docking and MM-GBSA scoring. J. Med. Chem. 2006, 49, 4805-4808.
    • (2006) J. Med. Chem , vol.49 , pp. 4805-4808
    • Lyne, P.D.1    Lamb, M.L.2    Saeh, J.C.3
  • 31
    • 33645095919 scopus 로고    scopus 로고
    • Transient stability of the helical pattern of region F19-L22 of the N-terminal domain of p53: A molecular dynamics simulation study
    • Espinoza-Fonseca, L. M.; Trujillo-Ferrara, J. G. Transient stability of the helical pattern of region F19-L22 of the N-terminal domain of p53: A molecular dynamics simulation study. Biochem. Biophys. Res. Commun. 2006, 343, 110-116.
    • (2006) Biochem. Biophys. Res. Commun , vol.343 , pp. 110-116
    • Espinoza-Fonseca, L.M.1    Trujillo-Ferrara, J.G.2
  • 32
    • 0034710708 scopus 로고    scopus 로고
    • Discovery of potent antagonists of the interaction between human double minute 2 and tumor suppressor p53
    • Garcia-Echeverria, C.; Chene, P.; Blommers, M. J. J.; Furet, P. Discovery of potent antagonists of the interaction between human double minute 2 and tumor suppressor p53. J. Med. Chem. 2000, 43, 3205-3208.
    • (2000) J. Med. Chem , vol.43 , pp. 3205-3208
    • Garcia-Echeverria, C.1    Chene, P.2    Blommers, M.J.J.3    Furet, P.4
  • 33
    • 33644896783 scopus 로고    scopus 로고
    • Structure-activity studies in a family of beta-hairpin protein epitope mimetic inhibitors of the p53-HDM2 protein-protein interaction
    • Fasan, R.; Dias, R. L. A.; Moehle, K.; Zerbe, O.; Obrecht, D.; Mittl, P. R. E.; Grutter, M. G.; Robinson, J. A. Structure-activity studies in a family of beta-hairpin protein epitope mimetic inhibitors of the p53-HDM2 protein-protein interaction. ChemBioChem 2006, 7, 515-526.
    • (2006) ChemBioChem , vol.7 , pp. 515-526
    • Fasan, R.1    Dias, R.L.A.2    Moehle, K.3    Zerbe, O.4    Obrecht, D.5    Mittl, P.R.E.6    Grutter, M.G.7    Robinson, J.A.8
  • 34
    • 66149097894 scopus 로고    scopus 로고
    • Maestro, Version 8.0; Schrodinger, LLC: New York, NY, 2005
    • Maestro, Version 8.0; Schrodinger, LLC: New York, NY, 2005.
  • 35
    • 66149135751 scopus 로고    scopus 로고
    • Discovery Studio, Version 2.0; Accelrys, Inc, San Diego, CA, 2008
    • Discovery Studio, Version 2.0; Accelrys, Inc.: San Diego, CA, 2008.
  • 36
    • 33748076161 scopus 로고    scopus 로고
    • Crystallographic analysis of an 8-mer p53 peptide analogue complexed with MDM2
    • Sakurai, K.; Schubert, C.; Kahne, D. Crystallographic analysis of an 8-mer p53 peptide analogue complexed with MDM2. J. Am. Chem. Soc. 2006, 128, 11000-11001.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 11000-11001
    • Sakurai, K.1    Schubert, C.2    Kahne, D.3
  • 37
    • 66149151866 scopus 로고    scopus 로고
    • Impact, Version 5.0; Schrodinger, LLC: New York, NY, 2005
    • Impact, Version 5.0; Schrodinger, LLC: New York, NY, 2005.
  • 38
    • 0015861774 scopus 로고
    • Relationship between inhibition constant (K1) and concentration of inhibitor which causes 50 percent inhibition (150) of an enzymatic-reaction
    • Cheng, Y.; Prusoff, W. H. Relationship between inhibition constant (K1) and concentration of inhibitor which causes 50 percent inhibition (150) of an enzymatic-reaction. Biochem. Pharmacol. 1973, 22, 3099-3108.
    • (1973) Biochem. Pharmacol , vol.22 , pp. 3099-3108
    • Cheng, Y.1    Prusoff, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.