Coupling of biocomputing systems with electronic chips: electronic interface for transduction of biochemical information

Journal of Physical Chemistry C

Volumn 113, Issue 6, 2009, Pages 2573-2579

  Krämer, Melina ^a,b   Pita, Marcos ^a   Zhou, Jian ^a   Ornatska, Maryna ^a   Poghossian, Arshak ^b   Schöning, Michael J ^b   Katz, Evgeny ^b  

^a CLARKSON UNIVERSITY   (United States)

^b AACHEN UNIVERSITY OF APPLIED SCIENCES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-COMPUTING; BIOCHEMICAL INFORMATIONS; BIOCHEMICAL REACTIONS; BIOCHEMICAL SIGNALS; CAPACITANCE VOLTAGES; CHIP INTERFACES; ELECTRONIC CHIPS; ELECTRONIC INTERFACES; ELECTRONIC SIGNALS; ENZYME LOGIC; FIELD EFFECTS; GOLD NANOPARTICLES; IMPEDANCE SPECTROSCOPIES; INPUT SIGNALS; LOGIC SYSTEMS; PH CHANGES; PROTONATED; SI CHIPS; SI-BASED;

BACTERIOPHAGES; ENZYMES; NANOPARTICLES;

SIGNAL TRANSDUCTION;

EID: 65249092639     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/jp808320s     Document Type: Article

References (98)

1. (a)Adamatzky, A.; De Lacy Costello, B.; Asai, T. Reaction- Diffusion Computers; Elsevier Science: Amsterdam, 2005.
2. (b)Unconcventional Computing 2005: From Cellular Automata to Wetware; Teuscher, C., Adamatzky, A., Eds.; C. Luniver Press: Beckington, U.K., 2005.
3. (a)De Silva, A. P.; Uchiyama, S.; Vance, T. P.; Wannalerse, B. Coord. Chem. Rev. 2007, 251, 1623-1632.
4. (b)Magri, D. C.; Brown, G. J.; McClean, G. D.; De Silva, A. P. J. Am. Chem. Soc. 2006, 128, 4950-4951.
5. (c)Balzani, V.; Credi, A.; Venturi, M. ChemPhysChem 2003, 4, 49-59.
6. (a)Gupta, T.; Van der Boom, M. E. Angew. Chem., Int. Ed. 2008, 47, 5322-5326.
7. (b)Katz, E.; Willner, I. Electrochem. Commun. 2006, 8, 879-882.
8. (a) Li, Z. X.; Liao, L. Y.; Sun, W.; Xu, C. H.; Zhang, C.; Fang, C. J.; Yan, C. H. J. Phys. Chem. C 2008, 112, 5190-5196.
9. (b)Pischel, U.; Heller, B. New J. Chem. 2008, 32, 395-400.
10. (c)Ballardini, R.; Ceroni, P.; Credi, A.; Gandolfi, M. T.; Maestri, M.; Semararo, M.; Venturi, M.; Balzani, V. Adv. Funct. Mater. 2007, 17, 740-750.
11. (a) De Silva, A. P.; Uchiyama, S. Nat. Nanotechnol. 2007, 2, 399-410. (b) Raymo, F. M. AdV. Mater. 2002, 14, 401-414.
12. (a)Zhou, W. D.; Li, J. B.; He, X. R.; Li, C. H.; Lv, J.; Li, Y. L.; Wang, S.; Liu, H. B.; Zhu, D. B. Chem.sEur. J. 2008, 14, 754-763.
13. (b)Zhao, L. Y.; Hou, Q. F.; Sui, D.; Wang, Y.; Jiang, S. M. Spectrochim. Acta, Part A 2007, 67, 1120-1125.
14. (c)Xiao, S. Z.; Yi, T.; Zhou, Y. F.; Zhao, Q.; Li, F. Y.; Huang, C. H. Tetrahedron 2006, 62, 10072-10078.
15. (d)Flood, A. H.; Ramirez, R. J. A.; Deng, W. Q.; Muller, R. P.; Goddard, W. A.; Stoddart, J. F. Aust. J. Chem. 2004, 57, 301-322.
16. (e)Katz, E.; Willner, I. Angew. Chem., Int. Ed. 2005, 44, 4791-4794.
17. (f)Szacilowski, K.; Macyk, W. Solid-State Electron. 2006, 50, 1649-1655.
18. (a)Raymo, F. M.; Alvarado, R. J.; Giordani, S.; Cejas, M. A. J. Am. Chem. Soc. 2003, 125, 2361-2364.
19. (b)Baron, R.; Onopriyenko, A.; Katz, E.; Lioubashevski, O.; Willner, I.; Wang, S.; Tian, H. Chem. Commun. 2006, 2147-2149.
20. (c)Katz, E.; Willner, I. Chem. Commun. 2005, 5641-5643.
21. (d)Shipway, A. N.; Katz, E.; Willner, I. In Structure and Bonding; Sauvage, J.-P., Ed.; Springer-Verlag: Berlin, 2001; Vol. 99, pp 237-281.
22. (a)Andreasson, J.; Straight, S. D.; Bandyopadhyay, S.; Mitchell, R. H.; Moore, T. A.; Moore, A. L.; Gust, D. J. Phys. Chem. C 2007, 111, 14274-14278.
23. (b)Perez-Inestrosa, E.; Montenegro, J. M.; Collado, D.; Suau, R. Chem. Commun. 2008, 1085-1087.
24. Margulies, D.; Felder, C. E.; Melman, G.; Shanzer, A. J. Am. Chem. Soc. 2007, 129, 347-354.
25. (a)Credi, A.; Balzani, V.; Langford, S. J.; Stoddart, J. F. J. Am. Chem. Soc. 1997, 119, 2679-2681.
26. (b)Pina, F.; Melo, M. J.; Maestri, M.; Passaniti, P.; Balzani, V. J. Am. Chem. Soc. 2000, 122, 4496-4498.
27. (a) Nitahara, S.; Terasaki, N.; Akiyama, T.; Yamada, S. Thin Solid Films 2006, 499, 354-358.
28. (b)Katz, E.; Shipway, A. N.; Willner, I. In PhotoreactiVe Organic Thin Films; Sekkat, S., Knoll, W. Eds.; Academic Press: New York,2002; Chapters 2-7, pp 219-268.
29. (c)De Silva, A. P. Nature 2008, 454, 417-418.
30. (a) Szacilowski, K.; Macyk, W.; Stochel, G. J. Am. Chem. Soc. 2006, 128, 4550-4551.
31. (b)Li, L.; Yu, M. X.; Li, F. Y.; Yi, T.; Huang, C. H. Colloid Surf., A 2007, 304, 49-53.
32. (c)Katz, E.; Shipway, A. N. In Bioelectronics: From Theory to Applications; Willner, I., Katz, E. Eds.; Wiley-VCH: Weinheim, Germany, 2005; Chapter 11, pp 309-338.
33. Vasilyev, S.; Pita, M.; Katz, E. Electroanalysis 2008, 20, 22-29.
34. (a)Biancardo, M.; Bignozzi, C.; Hugh, D. C.; Redmond, G. Chem. Commun. 2005, 3918-3920.
35. (b)Zelikovich, L.; Libman, J.; Shanzer, A. Nature 1995, 374, 790-792.
36. (c)Asakawa, M.; Ashton, P. R.; Balzani, V.; Credi, A.; Mattersteig, G.; Matthews, O. A.; Montalti, M.; Spencer, N.; Stoddart, J. F.; Venturi, M. Chem.-Eur. J. 1997, 3, 1992-1996.
37. (a)Gunnlaugsson, T.; Mac Donail, D. A.; Parker, D. Chem. Commun. 2000, 93-94.
38. (b)Pina, F.; Roque, A.; Melo, M. J.; Maestri, I.; Belladelli, L.; Balzani, V. Chem.-Eur. J. 1998, 4, 1184-1191.
39. (a)Magri, D. C.; Coen, G. D.; Boyd, R. L.; De Silva, A. P. Anal. Chim. Acta 2006, 568, 156-160.
40. (b)Raymo, F. M.; Giordani, S. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 4941-4944.
41. Li, L.; Yu, M. X.; Li, F. Y.; Yi, T.; Huang, C. H. Colloids Surf., A 2007, 304, 49-53.
42. (a)Pischel, U. Angew. Chem., Int. Ed. 2007, 46, 4026-4040.
43. (b)Margulies, D.; Melman, G.; Shanzer, A. Nat. Mater. 2005, 4, 768-771.
44. (c)Margulies, D.; Melman, G.; Felder, C. E.; Arad-Yellin, R.; Shanzer, A. J. Am. Chem. Soc. 2004, 126, 15400-15401.
45. (d)Brown, G. J.; De Silva, A. P.; Pagliari, S. Chem. Commun. 2002, 2461-2463.
46. (a)Sun, W.; Zheng, Y. R.; Xu, C.-H.; Fang, C.-J.; Yan, C. H. J. Phys. Chem. C 2007, 111, 11706-11711.
47. (b)Zhou, Y. C.; Wu, H.; Qu, L.; Zhang, D. Q.; Zhu, D. B. J. Phys. Chem. B 2006, 110, 15676-15679.
48. (c)Zhang, L.; Whitfield, W. A.; Zhu, L. Chem. Commun. 2008, 1880-1882.
49. (a)Margulies, D.; Melman, G.; Shanzer, A. J. Am. Chem. Soc. 2006, 128, 4865-4871.
50. (b)Kuznetz, O.; Salman, H.; Shakkour, N.; Eichen, Y.; Speiser, S. Mol. Phys. 2008, 106, 531-535.
51. (c)Margulies, D.; Melman, G.; Shanzer, A. J. Am. Chem. Soc. 2006, 128, 4865-4871.
52. (a)Szacilowski, K. Chem.sEur. J. 2004, 10, 2520-2528.
53. (b)Ashkenasy, G.; Ghadiri, M. R. J. Am. Chem. Soc. 2004, 126, 11140-11141.
54. (c)Ashkenasy, G.; Jagasia, R.; Yadav, M.; Ghadiri, M. R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10872-10877.
55. (a)Stadler, R.; Ami, S.; Joachim, C.; Forshaw, M. Nanotechnology 2004, 15, S115-S121.
56. (b)Stadler, R.; Ami, S.; Forshaw, M.; Joachim, C. Nanotechnology 2003, 14, 722-732.
57. (c)Zhao, L. Y.; Sui, D.; Chai, J.; Wang, Y.; Jiang, S. M. J. Phys. Chem. B 2006, 110, 24299-24304.
58. De Silva, A. P.; Leydet, Y.; Lincheneau, C.; McClenaghan, N. D. J. Phys.: Condens. Matter 2006, 18, S1847-S1872.
59. Adamatzky, A. IEICE Trans. Electron. 2004, E87C, 1748-1756.
60. Bell, G.; Gray, J. N. In Beyond Calculation: The Next Fifty Years of Computing; Denning, P. J., Metcalfe, R. M., Eds.; Copernicus/Springer: New York, 1997; Chapter 1, p 30.
61. Shao, X. G.; Jiang, H. Y.; Cai, W. S. Prog. Chem. 2002, 14, 37-46.
62. Stojanovic, M. N.; Stefanovic, D.; LaBean, T.; Yan, H. In Bioelectronics: From Theory to Applications; Willner, I., Katz, E., Eds.; Wiley-VCH: Weinheim, Germany, 2005; pp 427-455.
63. Unger, R.; Moult, J. Proteins 2006, 63, 53-64.
64. Simpson, M. L.; Sayler, G. S.; Fleming, J. T.; Applegate, B. Trends Biotechnol. 2001, 19, 317-323.
65. (a)Strack, G.; Pita, M.; Ornatska, M.; Katz, E. ChemBioChem 2008, 9, 1260-1266.
66. (b)Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. Org. Biomol. Chem. 2006, 4, 989-991.
67. (c)Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. J. Phys. Chem. A 2006, 110, 8548-8553.
68. (d)Baron, R.; Lioubashevski, O.; Katz, E.; Niazov, T.; Willner, I. Angew. Chem., Int. Ed. 2006, 45, 1572-1576.
69. (a)Strack, G.; Ornatska, M.; Pita, M.; Katz, E. J. Am. Chem. Soc. 2008, 130, 4234-4235.
70. (b)Niazov, T.; Baron, R.; Katz, E.; Lioubashevski, O.; Willner, I. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 17160-17163.
71. Privman, V.; Strack, G.; Solenov, D.; Pita, M.; Katz, E. J. Phys. Chem. B 2008, 112, 11777-11784.
72. Motornov, M.; Zhou, J.; Pita, M.; Gopishetty, V.; Tokarev, I.; Katz, E.; Minko, S. Nano Lett. 2008, 8, 2993-2997.
73. Pita, M.; Katz, E. J. Am. Chem. Soc. 2008, 130, 36-37.
74. (a)Willner, I.; Katz, E. Angew. Chem., Int. Ed. 2000, 39, 1180-1218.
75. (b)Katz, E.; Shipway, A. N.; Willner, I. In Encyclopedia of Electrochemistry; Wilson, G. S., Bard, A. J., Stratmann, M., Eds.; Wiley-VCH GmbH: Weinheim, Germany, 2002; Vol. 9, Chapter 17, pp 559-626.
76. Tam, T. K.; Zhou, J.; Pita, M.; Ornatska, M.; Minko, S.; Katz, E. J. Am. Chem. Soc. 2008, 130, 10888-10889.
77. (a)Zayats, M.; Kharitonov, A. B.; Katz, E.; Willner, I. Analyst 2001, 126, 652-657.
78. (b)Kharitonov, A. B.; Zayats, M.; Alfonta, L.; Katz, E.; Willner, I. Sens. Actuators, B 2001, 76, 203-210.
79. (c)Zayats, M.; Kharitonov, A. B.; Katz, E.; Bückmann, A. F.; Willner, I. Biosens. Bioelectron. 2000, 15, 671-680.
80. (d)Dzyadevych, S. V.; Soldatkin, A. P.; El'skaya, A. V.; Martelet, C.; Jaffrezic-Renault, N. Anal. Chim. Acta 2006, 568, 248-258.
81. (a)Gun, J.; Schöning, M. J.; Abouzar, M. H.; Poghossian, A.; Katz, E. Electroanalysis 2008, 20, 1748-1753.
82. (b)Mourzina, I. G.; Yoshinobu, T.; Ermolenko, Y. E.; Vlasov, Y. G.; Schöning, M. J.; Iwasaki, H. Microchim. Acta 2004, 144, 41-50.
83. (a)Tam, T. K.; Ornatska, M.; Pita, M.; Minko, S.; Katz, E. J. Phys. Chem. C 2008, 112, 8438-8445.
84. (b)Motornov, M.; Sheparovych, R.; Katz, E.; Minko, S. ACS Nano 2008, 2, 41-52.
85. (c)Tokarev, I.; Orlov, M.; Katz, E.; Minko, S. J. Phys. Chem. B 2007, 111, 12141-12145.
86. (a)Katz, E.; Willner, I. Angew. Chem., Int. Ed. 2004, 43, 6042-6108.
87. (b)Katz, E.; Willner, I. ChemPhysChem 2004, 5, 1194-1104.
88. (c)Wang, J. Electroanalysis 2005, 17, 7-14.
89. Doron, A.; Katz, E.; Willner, I. Langmuir 1995, 11, 1313-1317.
90. (a)Turkevich, J.; Stevenson, P.; Hillier, J. Discuss. Faraday Soc. 1951, 11, 55-75.
91. (b)Frens, G. Nat. Phys. Sci. 1973, 241, 20-22.
92. Schöning, M. J.; Brinkmann, D.; Rolka, D.; Demuth, C.; Poghossian, A. Sens. Actuators, B 2005, 111-112, 423-429.
93. Wagner, T.; Maris, R. J.; Ackermann, H.-J.; Otto, R.; Beging, S.; Poghossian, A.; Schöning, M. J. Sens. Actuators, B 2007, 127, 217-223.
94. Schöning, M. J.; Poghossian, A. Electroanalysis 2006, 18, 1893-1900.
95. Walczak, M. M.; Popenoe, D. D.; Deinhammer, R. S.; Lamp, B. D.; Chung, C.; Porter, M. C. Langmuir 1991, 7, 2687-2693.
96. Zhao, J.; Luo, L.; Yang, X.; Wang, E.; Dong, S. Electroanalysis 1999, 11, 1108-1111.
97. Poghossian, A.; Schöning, M. J. In Encyclopedia of Sensors; Grimes, C. A., Dickey, E. C., Pishko, M. V., Eds.; American Scientific Publishers: Valencia, CA, 2006; Vol. 9, pp 463-534.
98. Poghossian, A.; Schöning, M. J. Appl. Phys. A: Mater. Sci. Process. 2007, 87, 517-524.