메뉴 건너뛰기




Volumn 130, Issue 16, 2009, Pages

Absolute FKBP binding affinities obtained via nonequilibrium unbinding simulations

Author keywords

[No Author keywords available]

Indexed keywords

LIGANDS; PROTEINS;

EID: 65149099238     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3119261     Document Type: Article
Times cited : (55)

References (67)
  • 3
    • 0030887944 scopus 로고    scopus 로고
    • 0002-7863,. 10.1021/ja963568+
    • J. Hermans and L. Wang, J. Am. Chem. Soc. 0002-7863 119, 2707 (1997). 10.1021/ja963568+
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 2707
    • Hermans, J.1    Wang, L.2
  • 5
    • 16344395749 scopus 로고    scopus 로고
    • 0006-3495,. 10.1529/biophysj.104.049494
    • W. Chen, C. -E. Chang, and M. K. Gilson, Biophys. J. 0006-3495 87, 3035 (2004). 10.1529/biophysj.104.049494
    • (2004) Biophys. J. , vol.87 , pp. 3035
    • Chen, W.1    Chang, C.-E.2    Gilson, M.K.3
  • 6
    • 0032054675 scopus 로고    scopus 로고
    • 0002-7863,. 10.1021/ja9738539
    • V. Helms and R. C. Wade, J. Am. Chem. Soc. 0002-7863 120, 2710 (1998). 10.1021/ja9738539
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 2710
    • Helms, V.1    Wade, R.C.2
  • 8
    • 0035950796 scopus 로고    scopus 로고
    • 1089-5639,. 10.1021/jp011878v
    • S. B. Dixit and C. Chipot, J. Phys. Chem. A 1089-5639 105, 9795 (2001). 10.1021/jp011878v
    • (2001) J. Phys. Chem. A , vol.105 , pp. 9795
    • Dixit, S.B.1    Chipot, C.2
  • 14
    • 28144441347 scopus 로고    scopus 로고
    • 0022-2623,. 10.1021/jm050306m
    • D. A. Pearlman, J. Med. Chem. 0022-2623 48, 7796 (2005). 10.1021/jm050306m
    • (2005) J. Med. Chem. , vol.48 , pp. 7796
    • Pearlman, D.A.1
  • 15
    • 17044372385 scopus 로고    scopus 로고
    • 1089-5647,. 10.1021/jp046022f
    • J. Carlsson and J. Aqvist, J. Phys. Chem. B 1089-5647 109, 6448 (2005). 10.1021/jp046022f
    • (2005) J. Phys. Chem. B , vol.109 , pp. 6448
    • Carlsson, J.1    Aqvist, J.2
  • 17
  • 18
    • 33749532284 scopus 로고    scopus 로고
    • 0006-3495,. 10.1529/biophysj.106.084301
    • J. Wang, Y. Deng, and B. Roux, Biophys. J. 0006-3495 91, 2798 (2006). 10.1529/biophysj.106.084301
    • (2006) Biophys. J. , vol.91 , pp. 2798
    • Wang, J.1    Deng, Y.2    Roux, B.3
  • 21
    • 33646178918 scopus 로고    scopus 로고
    • 0006-3495,. 10.1529/biophysj.105.071589
    • M. S. Lee and M. A. Olson, Biophys. J. 0006-3495 90, 864 (2006). 10.1529/biophysj.105.071589
    • (2006) Biophys. J. , vol.90 , pp. 864
    • Lee, M.S.1    Olson, M.A.2
  • 23
    • 55649098831 scopus 로고    scopus 로고
    • 1089-5647,. 10.1021/jp802460p
    • M. S. Lee and M. A. Olson, J. Phys. Chem. B 1089-5647 112, 13411 (2008). 10.1021/jp802460p
    • (2008) J. Phys. Chem. B , vol.112 , pp. 13411
    • Lee, M.S.1    Olson, M.A.2
  • 24
    • 33646471468 scopus 로고
    • 0021-9606,. 10.1063/1.1749657
    • J. G. Kirkwood, J. Chem. Phys. 0021-9606 3, 300 (1935). 10.1063/1.1749657
    • (1935) J. Chem. Phys. , vol.3 , pp. 300
    • Kirkwood, J.G.1
  • 25
    • 36849122972 scopus 로고
    • 0021-9606,. 10.1063/1.1740409
    • R. W. Zwanzig, J. Chem. Phys. 0021-9606 22, 1420 (1954). 10.1063/1.1740409
    • (1954) J. Chem. Phys. , vol.22 , pp. 1420
    • Zwanzig, R.W.1
  • 26
    • 36849102835 scopus 로고
    • 0021-9606,. 10.1063/1.1678245
    • J. P. Valleau and D. N. Card, J. Chem. Phys. 0021-9606 57, 5457 (1972). 10.1063/1.1678245
    • (1972) J. Chem. Phys. , vol.57 , pp. 5457
    • Valleau, J.P.1    Card, D.N.2
  • 28
    • 4243754128 scopus 로고    scopus 로고
    • 0031-9007,. 10.1103/PhysRevLett.78.2690
    • C. Jarzynski, Phys. Rev. Lett. 0031-9007 78, 2690 (1997). 10.1103/PhysRevLett.78.2690
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 2690
    • Jarzynski, C.1
  • 30
    • 58149144258 scopus 로고    scopus 로고
    • 0006-3495,. 10.1529/biophysj.108.139675
    • H. Vashisth and C. F. Abrams, Biophys. J. 0006-3495 95, 4193 (2008). 10.1529/biophysj.108.139675
    • (2008) Biophys. J. , vol.95 , pp. 4193
    • Vashisth, H.1    Abrams, C.F.2
  • 32
    • 56049117665 scopus 로고    scopus 로고
    • 0006-3495,. 10.1529/biophysj.108.131383
    • M. A. Cuendet and O. Michielin, Biophys. J. 0006-3495 95, 3575 (2008). 10.1529/biophysj.108.131383
    • (2008) Biophys. J. , vol.95 , pp. 3575
    • Cuendet, M.A.1    Michielin, O.2
  • 37
    • 0000003059 scopus 로고    scopus 로고
    • 0192-8651,. 10.1002/(SICI)1096-987X(199705)18:7<902::AID-JCC4>3.0. CO;2-V
    • R. J. Radmer and P. A. Kollman, J. Comput. Chem. 0192-8651 18, 902 (1997). 10.1002/(SICI)1096-987X(199705)18:7<902::AID-JCC4>3.0.CO;2-V
    • (1997) J. Comput. Chem. , vol.18 , pp. 902
    • Radmer, R.J.1    Kollman, P.A.2
  • 38
    • 0000521710 scopus 로고    scopus 로고
    • 0026-8976,. 10.1080/002689797169600
    • D. A. Kofke and P. T. Cummings, Mol. Phys. 0026-8976 92, 973 (1997). 10.1080/002689797169600
    • (1997) Mol. Phys. , vol.92 , pp. 973
    • Kofke, D.A.1    Cummings, P.T.2
  • 39
    • 0035333627 scopus 로고    scopus 로고
    • 0021-9606,. 10.1063/1.1363668
    • G. Hummer, J. Chem. Phys. 0021-9606 114, 7330 (2001). 10.1063/1.1363668
    • (2001) J. Chem. Phys. , vol.114 , pp. 7330
    • Hummer, G.1
  • 40
    • 23944432199 scopus 로고    scopus 로고
    • 0021-9606,. 10.1063/1.1873592
    • M. R. Shirts and V. S. Pande, J. Chem. Phys. 0021-9606 122, 144107 (2005). 10.1063/1.1873592
    • (2005) J. Chem. Phys. , vol.122 , pp. 144107
    • Shirts, M.R.1    Pande, V.S.2
  • 41
    • 33645386831 scopus 로고    scopus 로고
    • 0301-0104,. 10.1016/j.chemphys.2005.08.054
    • C. Oostenbrink and W. F. van Gunsteren, Chem. Phys. 0301-0104 323, 102 (2006). 10.1016/j.chemphys.2005.08.054
    • (2006) Chem. Phys. , vol.323 , pp. 102
    • Oostenbrink, C.1    Van Gunsteren, W.F.2
  • 43
    • 5244304444 scopus 로고
    • 0021-9991,. 10.1016/0021-9991(76)90078-4
    • C. H. Bennett, J. Comput. Phys. 0021-9991 22, 245 (1976). 10.1016/0021-9991(76)90078-4
    • (1976) J. Comput. Phys. , vol.22 , pp. 245
    • Bennett, C.H.1
  • 44
    • 23744478437 scopus 로고    scopus 로고
    • 0001-4842,. 10.1021/ar040148d
    • G. Hummer and A. Szabo, Acc. Chem. Res. 0001-4842 38, 504 (2005). 10.1021/ar040148d
    • (2005) Acc. Chem. Res. , vol.38 , pp. 504
    • Hummer, G.1    Szabo, A.2
  • 46
    • 4244116139 scopus 로고    scopus 로고
    • 1063-651X,. 10.1103/PhysRevE.56.5018
    • C. Jarzynski, Phys. Rev. E 1063-651X 56, 5018 (1997). 10.1103/PhysRevE.56.5018
    • (1997) Phys. Rev. e , vol.56 , pp. 5018
    • Jarzynski, C.1
  • 47
    • 0000186593 scopus 로고    scopus 로고
    • 1063-651X,. 10.1103/PhysRevE.61.2361
    • G. E. Crooks, Phys. Rev. E 1063-651X 61, 2361 (2000). 10.1103/PhysRevE.61.2361
    • (2000) Phys. Rev. e , vol.61 , pp. 2361
    • Crooks, G.E.1
  • 49
    • 4143087050 scopus 로고    scopus 로고
    • 0021-9606,. 10.1063/1.1651473
    • S. Park and K. Schulten, J. Chem. Phys. 0021-9606 120, 5946 (2004). 10.1063/1.1651473
    • (2004) J. Chem. Phys. , vol.120 , pp. 5946
    • Park, S.1    Schulten, K.2
  • 51
  • 54
    • 42749105341 scopus 로고    scopus 로고
    • 1063-651X,. 10.1103/PhysRevE.69.057702
    • N. Lu, D. Wu, T. B. Woolf, and D. A. Kofke, Phys. Rev. E 1063-651X 69, 057702 (2004). 10.1103/PhysRevE.69.057702
    • (2004) Phys. Rev. e , vol.69 , pp. 057702
    • Lu, N.1    Wu, D.2    Woolf, T.B.3    Kofke, D.A.4
  • 55
    • 43249106438 scopus 로고    scopus 로고
    • 0031-9007,. 10.1103/PhysRevLett.100.180602
    • D. D. L. Minh and A. B. Adib, Phys. Rev. Lett. 0031-9007 100, 180602 (2008). 10.1103/PhysRevLett.100.180602
    • (2008) Phys. Rev. Lett. , vol.100 , pp. 180602
    • Minh, D.D.L.1    Adib, A.B.2
  • 62
    • 0000388705 scopus 로고    scopus 로고
    • 0192-8651,. 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3. 0.CO;2-H
    • B. Hess, H. Bekker, H. J. C. Berendsen, and J. G. E. M. Fraaije, J. Comput. Chem. 0192-8651 18, 1463 (1997). 10.1002/(SICI)1096-987X(199709)18: 12<1463::AID-JCC4>3.0.CO;2-H
    • (1997) J. Comput. Chem. , vol.18 , pp. 1463
    • Hess, B.1    Bekker, H.2    Berendsen, H.J.C.3    Fraaije, J.G.E.M.4
  • 65
    • 18744379822 scopus 로고    scopus 로고
    • 0031-9007,. 10.1103/PhysRevLett.89.180602
    • D. M. Zuckerman and T. B. Woolf, Phys. Rev. Lett. 0031-9007 89, 180602 (2002). 10.1103/PhysRevLett.89.180602
    • (2002) Phys. Rev. Lett. , vol.89 , pp. 180602
    • Zuckerman, D.M.1    Woolf, T.B.2
  • 67
    • 65149105616 scopus 로고    scopus 로고
    • A. Grossfield, http://membrane.urmc.rochester.edu.
    • Grossfield, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.