Molecular characterization of Salmonella isolates by REP-PCR and RAPD analysis

Infection, Genetics and Evolution

Volumn 9, Issue 3, 2009, Pages 322-327

  Albufera, U ^a   Bhugaloo Vial, P ^b   Issack, M I ^c   Jaufeerally Fakim, Y ^a  

^a UNIVERSITY OF MAURITIUS   (Mauritius)

^b Pelargic   (Mauritius)

^c Victoria Hospital   (Mauritius)

Author keywords

RAPD; REP PCR; Salmonella

Indexed keywords

BACTERIAL ANTIGEN; BACTERIAL DNA;

ARTICLE; BACTERIAL GENETICS; BACTERIUM ISOLATE; CHROMOSOME BANDING PATTERN; COMPUTER PROGRAM; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA DETERMINATION; DNA FINGERPRINTING; ENTEROBACTERIACEAE; GENETIC ANALYSIS; NONHUMAN; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PRINCIPAL COORDINATE ANALYSIS; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; SALMONELLA; STRAIN DIFFERENCE;

ANIMALS; CATTLE; CHICKENS; CHILD; CHILD, PRESCHOOL; DNA, BACTERIAL; FEMALE; FOOD MICROBIOLOGY; HUMANS; INFANT; MALE; MEAT; PERCIFORMES; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SALMONELLA; SALMONELLA INFECTIONS; SEROTYPING; SHEEP; SPECIES SPECIFICITY; SWINE;

ENTEROBACTERIACEAE; SALMONELLA;

EID: 64549106970     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2007.12.003     Document Type: Article

References (40)

1. Alvarez J., Sota M., Vivanco A.B., Perales I., Cisterna R., Rementeria A., and Garaizar J. Development of multiplex PCR technique for the detection and epidemiological typing of Salmonella in human clinical samples. J. Clin. Microbiol. 42 4 (2004) 1734-1738
2. Atienza S., Satovic Z., Petersen K., Dolstra O., and Martin A. Preliminary genetic linkage map of Miscanthus sinensis with RAPD markers. Theor. Appl. Genet. 105 6-7 (2002) 946-952
3. Balado S., Christensen L., and Trajceuska S. Appl. Environ. Microbiol. (2001) 2859-2862
4. Beyer W., Mukendi F.M., Kimmig P., and Böhm R. Suitability of repetitive-DNA-sequence-based PCR fingerprinting for characterizing epidemic isolates of Salmonella enterica serovar Saintpaul. J. Clin. Microbiol. 36 6 (1998) 1549-1554
5. Brenner R.W., Villar R.G., Angulo F.J., Tauxe R., and Swaminathan B. Salmonella nomenclature. J. Clin. Microbiol. 38 (2000) 2465-2467
6. Bruant G., Watt S., Quentin R., and Rosenau A. Typing of nonencapsuarted Haemophilus strains by repetitive-element sequence-based PCR using intergenic dyad sequences. J. Clin. Microbiol. 41 (2003) 3473-3480
7. Burr M.D., Josephson K.L., and Pepper I.L. An evaluation of ERIC PCR and AP PCR fingerprinting for discriminating Salmonella serotypes. Lett. Appl. Microbiol. 27 (1998) 24-30
8. Byun S.K., Jung S.C., and Yoo H.S. Random amplification of polymorphic DNA typing of Listeria monocytogenes isolated from meat. Int. J. Food Microbiol. 69 (2001) 227-235
9. Center for Disease Control and Prevention, 2005. Salmonellosis. Coordination Center for Infection Diseases/Division of Bacterial and Mycotic Diseases. Atlanta, U.S.A.
10. Dombek P.E., Johnson L.K., Zimmerley S.T., and Sadowsky M.J. Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl. Environ. Microbiol. 66 6 (2000) 2572-2577
11. Ertas H.B., and Seker E. Isolation of Listeria monocytogenes from fish intestines and RAPD analysis. J. Vet. Anim. Sci. 29 (2005) 1007-1011
12. Farber J.M., and Peterkin P.I. Listeria monocytogenes, a food-borne pathogen. Microbiol. Rev. 55 (1991) 476-511
13. Foley S.L., White D.G., McDermott P.F., Walker R.D., Rhodes B., Fedorka-Cray P.J., Simjee S., and Zhao S. Comparison of subtyping methods for differentiating Salmonella enterica Serovar Typhimurium isolates obtained from food animal sources. J. Clin. Microbiol. 44 10 (2006) 3569-3577
14. Gevers D., Huys G., and Swings J. Applicability of rep-PCR fingerprinting of Lactobacillus species. FEMS Microbiol. Lett. 205 (2001) 31-36
15. Hulton C.S.J., Higgins C.F., and Sharp P.M. ERIC sequences: a novel repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other Enterobacteriaceae. Mol. Microbiol. 5 (1991) 825-834
16. Jerek B., Gilot P., Gubina M., Klun N., Mehle J., Tcherneva E., Rijpens N., and Herman L. Typing of Listeria monocytogenes strains by repetitive element sequence-based PCR. J. Clin. Microbiol. 37 1 (1999) 103-109
17. Johnson J.R., and Clabots C. Improved repetitive-element PCR fingerprinting of Salmonella enterica with the use of extremely elevated annealing temperatures. Clin. Diagn. Lab. Immun. 7 (2000) 258-264
18. Johnson J.R., Clabots C., and Azar M. Molecular analysis of hospital cafeteria-associated salmonellosis outbreak using modified repetitive element PCR fingerprinting. J. Microbiol. 39 10 (2001) 3452-3460
19. Khoodoo M.H.R., Issack M.I., and Jaufeerally-Fakim Y. Serotyping and RAPD profiles of Salmonella enterica isolates from Mauritius. Lett. Appl. Microbiol. 35 (2002) 146-152
20. Kwang J., Littledlike E.T., and Keen J.E. Use of polymerase chain reaction for Salmonella detection. Lett. Appl. Microbiol. 22 (1996) 46-51
21. Labbé, G.R., Garcia, S., 2001. In: Ronald, Labbé, Santos, Garcia (Eds.), Guide to Food-Borne Pathogens. John Wiley and Sons Inc., ISBN 0-471-35034-0 2001.
22. Malorny B., Hoorfar J., Bunge C., and Helmuth R. Multicenter validation of the analytical accuracy of Salmonella PCR: towards an international standard. Appl. Environ. Microbiol. 69 (2003) 290-296
23. Martin B., Humbert O., Camara M., Guenzi E., Walker J., Mitchell T., Andrew P., Prudhomme M., Alloing G., and Hakenbeck R. A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res. 20 (1992) 3479-4383
24. McQuiston J.R., Parrenas R., Ortiz-Rivera M., Gheesling L., Brenner F., and Fields P.I. Sequencing and comparative analysis of flagellin genes fliC, fljB, and flpA from Salmonella. J. Clin. Microbiol. 42 (2004) 1923-1932
25. Morozova E.V., Ryskov A.P., and Semyenova S.K. RAPD variation in two Trematode species (Fasciola hepatica & Dicrocoelium dendriticum) from a single cattle population. Russ. J. Genet. 38 8 (2002) 977-983
26. Popoff M.Y., Bockemuhl J., and Gheesling L. Supplement 2001 (no. 45) to the Kauffmann-White scheme. Res. Microbiol. 154 (2003) 173-174
27. Rademaker J.L.W., Hoste B., Louws F.J., Kersters K., Swings J., Vauterin I., Vauterin P., and de Bruijn F.J. Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system. Int. J. Syst. Evol. Microbiol. 50 (2000) 665-677
28. Rasschaert G., Houf K., Imberechts H., Grijspeerdt K., De Zutter L., and Heyndrickx M. Comparison of five repetitive-sequence-based PCR typing methods for molecular discrimination of Salmonella enterica isolates. J. Clin. Microbiol. 43 (2005) 3615-3623
29. Ruiz J., Capitano L., Nunez L., Castro D., Sierra J.M., Hatha M., Borrego J.J., and Vila J. Mechanisms of resistance to ampicillin, chloramphenicol and quinolones in multiresistant Salmonella typhimurium strains isolated from fish. J. Antimicrob. Chemother. 43 5 (1999) 699-702
30. Shangkuan Y.H., and Lin H.C. Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella typhi and other Salmonella species. J. Appl. Microbiol. 85 4 (1998) 693-702
31. Shanmugam R., Fei S., and Christians N.E. Analysis of genetic diversity in rough bluegrass determined by RAPD markers. Plant Genet. Resour. 46 (2005) 162-167
32. Spiridonava L., Chelomina G., Starikov V., Korablev V., Zvirka M., and Lyapunova E. RAPD-PCR analysis of ground squirrels from the Tobol-Ishim interfluve: Evidence for interspecific hybridization between ground squirrel species Spermophilus major and S. erythrogenys. Russ. J. Genet. 41 9 (2005) 991-1001
33. Stern M.J., Ames F.L., Smith N.H., Robinson E.C., and Higgins C.F. Repetitive extragenic palindromic sequences: a major component of the bacterial genome. Cell 37 (1984) 1015-1026
34. Ventura M., Meylan V., and Zink R. Identification and tracing of Bifidobacterium species by use of enterobacterial repetitive intergenic consensus sequences. Appl. Environ. Microbiol. 69 (2003) 4296-4301
35. Versalovic J., Koeuth T., and Lupski J.R. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19 (1991) 6823-6931
36. Weigel R.M., Qiao B., Teferedegne B., Suh D.K., Barber D.A., Isaacson R.E., and White B.A. Comparison of pulsed field gel electrophoresis and repetitive sequence polymerase chain reaction as genotyping methods for detection of genetic diversity and inferring transmission of Salmonella. Vet. Microbiol. 100 3-4 (2004) 205-217
37. Welsh J., and McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18 (1990) 7213-7219
38. Williams J.G.K., Kubellick A.R., Livak K.J., Rafalski J.A., and Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18 (1990) 6531-6535
39. Wu S.B., Collins G., and Sedgley M. A molecular linkage map of olive (Olea europaea L.) based on RAPD, microsatellite, and SCAR markers. Genome 47 1 (2004) 26-35
40. Yamamura H., Hayakawa M., Nakagawa Y., and Iimura Y. Characterization of Nocardia asteriodes isolates from different ecological habitats on the basis of repetitive extragenic palindromic-PCR fingerprinting. Appl. Environ. Microbiol. 70 (2004) 3149-3151