-
1
-
-
0003604405
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Burge C.B., Tuschl T., and Sharp P.A. The RNA World (1999), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(1999)
The RNA World
-
-
Burge, C.B.1
Tuschl, T.2
Sharp, P.A.3
-
2
-
-
0003604405
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Will C.L., and Lührmann R. The RNA World (2006), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2006)
The RNA World
-
-
Will, C.L.1
Lührmann, R.2
-
3
-
-
0344198459
-
The spliceosome: the most complex macromolecular machine in the cell?
-
Nilsen T.W. The spliceosome: the most complex macromolecular machine in the cell?. BioEssays 25 (2003) 1147-1149
-
(2003)
BioEssays
, vol.25
, pp. 1147-1149
-
-
Nilsen, T.W.1
-
4
-
-
21244493903
-
Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex
-
Gornemann J., Kotovic K.M., Hujer K., and Neugebauer K.M. Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex. Mol. Cell 19 (2005) 53-63
-
(2005)
Mol. Cell
, vol.19
, pp. 53-63
-
-
Gornemann, J.1
Kotovic, K.M.2
Hujer, K.3
Neugebauer, K.M.4
-
5
-
-
0033117879
-
Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles
-
Kambach C., Walke S., and Nagai K. Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles. Curr. Opin. Struct. Biol. 9 (1999) 222-230
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 222-230
-
-
Kambach, C.1
Walke, S.2
Nagai, K.3
-
7
-
-
0036948420
-
Allosteric cascade of spliceosome activation
-
Brow D.A. Allosteric cascade of spliceosome activation. Annu. Rev. Genet. 36 (2002) 333-360
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 333-360
-
-
Brow, D.A.1
-
8
-
-
0032489021
-
Mechanical devices of the spliceosome: motors, clocks, springs, and things
-
Staley J.P., and Guthrie C. Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92 (1998) 315-326
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
9
-
-
0021441197
-
Evidence for the existence of snRNAs U4 and U6 in a single ribonucleoprotein complex and for their association by intermolecular base-pairing
-
Bringmann P., Appel B., Rinke J., Reuter R., Theissen H., and Luhrmann R. Evidence for the existence of snRNAs U4 and U6 in a single ribonucleoprotein complex and for their association by intermolecular base-pairing. EMBO J. 3 (1984) 1357-1363
-
(1984)
EMBO J.
, vol.3
, pp. 1357-1363
-
-
Bringmann, P.1
Appel, B.2
Rinke, J.3
Reuter, R.4
Theissen, H.5
Luhrmann, R.6
-
10
-
-
0021760292
-
U4 and U6 RNAs coexist in a single small nuclear ribonucleoprotein particle
-
Hashimoto C., and Steitz J.A. U4 and U6 RNAs coexist in a single small nuclear ribonucleoprotein particle. Nucleic Acids Res. 12 (1984) 3283-3293
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 3283-3293
-
-
Hashimoto, C.1
Steitz, J.A.2
-
11
-
-
34147095881
-
Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP
-
Liu S., Li P., Dybkov O., Nottrott S., Hartmuth K., Luhrmann R., et al. Binding of the human Prp31 Nop domain to a composite RNA-protein platform in U4 snRNP. Science 316 (2007) 115-120
-
(2007)
Science
, vol.316
, pp. 115-120
-
-
Liu, S.1
Li, P.2
Dybkov, O.3
Nottrott, S.4
Hartmuth, K.5
Luhrmann, R.6
-
13
-
-
0033229873
-
Functional interaction of a novel 15.5kD [U4/U6·U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA
-
Nottrott S., Hartmuth K., Fabrizio P., Urlaub H., Vidovic I., Ficner R., and Luhrmann R. Functional interaction of a novel 15.5kD [U4/U6·U5] tri-snRNP protein with the 5′ stem-loop of U4 snRNA. EMBO J. 18 (1999) 6119-6133
-
(1999)
EMBO J.
, vol.18
, pp. 6119-6133
-
-
Nottrott, S.1
Hartmuth, K.2
Fabrizio, P.3
Urlaub, H.4
Vidovic, I.5
Ficner, R.6
Luhrmann, R.7
-
14
-
-
0034509631
-
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
-
Vidovic I., Nottrott S., Hartmuth K., Luhrmann R., and Ficner R. Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment. Mol. Cell 6 (2000) 1331-1342
-
(2000)
Mol. Cell
, vol.6
, pp. 1331-1342
-
-
Vidovic, I.1
Nottrott, S.2
Hartmuth, K.3
Luhrmann, R.4
Ficner, R.5
-
15
-
-
0037107418
-
Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins
-
Nottrott S., Urlaub H., and Luhrmann R. Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins. EMBO J. 21 (2002) 5527-5538
-
(2002)
EMBO J.
, vol.21
, pp. 5527-5538
-
-
Nottrott, S.1
Urlaub, H.2
Luhrmann, R.3
-
17
-
-
33745613530
-
The network of protein-protein interactions within the human U4/U6·U5 tri-snRNP
-
Liu S.B., Rauhut R., Vornlocher H.P., and Luhrmann R. The network of protein-protein interactions within the human U4/U6·U5 tri-snRNP. RNA 12 (2006) 1418-1430
-
(2006)
RNA
, vol.12
, pp. 1418-1430
-
-
Liu, S.B.1
Rauhut, R.2
Vornlocher, H.P.3
Luhrmann, R.4
-
18
-
-
0030612833
-
Attenuated T-2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution
-
Pervushin K., Riek R., Wider G., and Wuthrich K. Attenuated T-2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution. Proc. Natl Acad. Sci. USA 94 (1997) 12366-12371
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 12366-12371
-
-
Pervushin, K.1
Riek, R.2
Wider, G.3
Wuthrich, K.4
-
19
-
-
0033609011
-
Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules
-
Riek R., Wider G., Pervushin K., and Wuthrich K. Polarization transfer by cross-correlated relaxation in solution NMR with very large molecules. Proc. Natl Acad. Sci. USA 96 (1999) 4918-4923
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 4918-4923
-
-
Riek, R.1
Wider, G.2
Pervushin, K.3
Wuthrich, K.4
-
20
-
-
0030589148
-
Selective methyl group protonation of perdeuterated proteins
-
Rosen M.K., Gardner K.H., Willis R.C., Parris W.E., Pawson T., and Kay L.E. Selective methyl group protonation of perdeuterated proteins. J. Mol. Biol. 263 (1996) 627-636
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 627-636
-
-
Rosen, M.K.1
Gardner, K.H.2
Willis, R.C.3
Parris, W.E.4
Pawson, T.5
Kay, L.E.6
-
21
-
-
0041930989
-
Cross-correlated relaxation enhanced H-1-C-13 NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes
-
Tugarinov V., Hwang P.M., Ollerenshaw J.E., and Kay L.E. Cross-correlated relaxation enhanced H-1-C-13 NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes. J. Am. Chem. Soc. 125 (2003) 10420-10428
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 10420-10428
-
-
Tugarinov, V.1
Hwang, P.M.2
Ollerenshaw, J.E.3
Kay, L.E.4
-
23
-
-
0034051065
-
A novel NMR method for determining the interfaces of large protein-protein complexes
-
Takahashi H., Nakanishi T., Kami K., Arata Y., and Shimada I. A novel NMR method for determining the interfaces of large protein-protein complexes. Nat. Struct. Biol. 7 (2000) 220-223
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 220-223
-
-
Takahashi, H.1
Nakanishi, T.2
Kami, K.3
Arata, Y.4
Shimada, I.5
-
24
-
-
0037389971
-
Structure and function of archaeal box C/D sRNP core proteins
-
Aittaleb M., Rashid R., Chen Q., Palmer J.R., Daniels C.J., and Li H. Structure and function of archaeal box C/D sRNP core proteins. Nat. Struct. Biol. 10 (2003) 256-263
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 256-263
-
-
Aittaleb, M.1
Rashid, R.2
Chen, Q.3
Palmer, J.R.4
Daniels, C.J.5
Li, H.6
-
25
-
-
36748998784
-
HADDOCK versus HADDOCK: new features and performance of HADDOCK 2.0 on the CAPRI targets
-
De Vries S.J., van Dijk A.D.J., Krzeminski M., van Dijk M., Thureau A., Hsu V., et al. HADDOCK versus HADDOCK: new features and performance of HADDOCK 2.0 on the CAPRI targets. Proteins: Struct., Funct., Bioinf. 69 (2007) 726-733
-
(2007)
Proteins: Struct., Funct., Bioinf.
, vol.69
, pp. 726-733
-
-
De Vries, S.J.1
van Dijk, A.D.J.2
Krzeminski, M.3
van Dijk, M.4
Thureau, A.5
Hsu, V.6
-
26
-
-
0037442962
-
HADDOCK: a protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C., Boelens R., and Bonvin A. HADDOCK: a protein-protein docking approach based on biochemical or biophysical information. J. Am. Chem. Soc. 125 (2003) 1731-1737
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.3
-
27
-
-
0037082424
-
Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
-
Kuhn J.F., Tran E.J., and Maxwell E.S. Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res. 30 (2002) 931-941
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 931-941
-
-
Kuhn, J.F.1
Tran, E.J.2
Maxwell, E.S.3
-
28
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in archaea
-
Rozhdestvensky T.S., Tang T.H., Tchirkova I.V., Brosius J., Bachellerie J.P., and Huttenhofer A. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in archaea. Nucleic Acids Res. 31 (2003) 869-877
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.P.5
Huttenhofer, A.6
-
31
-
-
0037673518
-
RNA-modifying machines in archaea
-
Omer A.D., Ziesche S., Decatur W.A., Fournier M.J., and Dennis P.P. RNA-modifying machines in archaea. Mol. Microbiol. 48 (2003) 617-629
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 617-629
-
-
Omer, A.D.1
Ziesche, S.2
Decatur, W.A.3
Fournier, M.J.4
Dennis, P.P.5
-
32
-
-
0037117533
-
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
-
Omer A.D., Ziesche S., Ebhardt H., and Dennis P.P. In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex. Proc. Natl Acad. Sci. USA 99 (2002) 5289-5294
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 5289-5294
-
-
Omer, A.D.1
Ziesche, S.2
Ebhardt, H.3
Dennis, P.P.4
-
33
-
-
33746285812
-
Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility
-
van Dijk M., van Dijk A.D.J., Hsu V., Boelens R., and Bonvin A. Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility. Nucleic Acids Res. 34 (2006) 3317-3325
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3317-3325
-
-
van Dijk, M.1
van Dijk, A.D.J.2
Hsu, V.3
Boelens, R.4
Bonvin, A.5
-
34
-
-
48449094112
-
Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles
-
Chaudhury S., and Gray J.J. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles. J. Mol. Biol. 381 (2008) 1068-1087
-
(2008)
J. Mol. Biol.
, vol.381
, pp. 1068-1087
-
-
Chaudhury, S.1
Gray, J.J.2
-
35
-
-
0034792548
-
Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein
-
Choy W.Y., Tollinger M., Mueller G.A., and Kay L.E. Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein. J. Biomol. NMR 21 (2001) 31-40
-
(2001)
J. Biomol. NMR
, vol.21
, pp. 31-40
-
-
Choy, W.Y.1
Tollinger, M.2
Mueller, G.A.3
Kay, L.E.4
-
36
-
-
0032544978
-
Solution NMR studies of a 42 KDa Escherichia coli maltose binding protein beta-cyclodextrin complex: chemical shift assignments and analysis
-
Gardner K.H., Zhang X.C., Gehring K., and Kay L.E. Solution NMR studies of a 42 KDa Escherichia coli maltose binding protein beta-cyclodextrin complex: chemical shift assignments and analysis. J. Am. Chem. Soc. 120 (1998) 11738-11748
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 11738-11748
-
-
Gardner, K.H.1
Zhang, X.C.2
Gehring, K.3
Kay, L.E.4
-
37
-
-
0034615759
-
Structure of the S15,S18-rRNA complex: assembly of the 30S ribosome central domain
-
Agalarov S.C., Prasad G.S., Funke P.M., Stout C.D., and Williamson J.R. Structure of the S15,S18-rRNA complex: assembly of the 30S ribosome central domain. Science 288 (2000) 107-112
-
(2000)
Science
, vol.288
, pp. 107-112
-
-
Agalarov, S.C.1
Prasad, G.S.2
Funke, P.M.3
Stout, C.D.4
Williamson, J.R.5
-
41
-
-
0031757669
-
Multiple sequence alignment with ClustalX
-
Jeanmougin F., Thompson J.D., Gouy M., Higgins D.G., and Gibson T.J. Multiple sequence alignment with ClustalX. Trends Biochem. Sci. 23 (1998) 403-405
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 403-405
-
-
Jeanmougin, F.1
Thompson, J.D.2
Gouy, M.3
Higgins, D.G.4
Gibson, T.J.5
-
42
-
-
0042622380
-
SWISS-MODEL: an automated protein homology-modeling server
-
Schwede T., Kopp J., Guex N., and Peitsch M.C. SWISS-MODEL: an automated protein homology-modeling server. Nucleic Acids Res. 31 (2003) 3381-3385
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
Kopp, J.2
Guex, N.3
Peitsch, M.C.4
-
43
-
-
3242886771
-
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
Dolinsky T.J., Nielsen J.E., McCammon J.A., and Baker N.A. PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res. 32 (2004) W665-W667
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
44
-
-
0035964342
-
Electrostatics of nanosystems: application to microtubules and the ribosome
-
Baker N.A., Sept D., Joseph S., Holst M.J., and McCammon J.A. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl Acad. Sci. USA 98 (2001) 10037-10041
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
|