Experimentally guided modelling of dendritic excitability in rat neocortical pyramidal neurones

Journal of Physiology

Volumn 587, Issue 7, 2009, Pages 1413-1437

  Keren, Naomi ^a   Bar Yehuda, Dan ^a   Korngreen, Alon ^a  

^a BAR ILAN UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR; SODIUM ION; VOLTAGE GATED POTASSIUM CHANNEL;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BACK PROPAGATION; COMPARTMENT MODEL; CONTROLLED STUDY; DENDRITIC CELL; DENSITY GRADIENT; GENETIC ALGORITHM; MATHEMATICAL ANALYSIS; MEMBRANE STEADY POTENTIAL; NEOCORTEX; NERVE CELL EXCITABILITY; NERVE POTENTIAL; NERVOUS SYSTEM CONDUCTANCE; NONHUMAN; PRIORITY JOURNAL; PYRAMIDAL NERVE CELL; RAT; SPIKE WAVE; DENDRITE; FIFTH LUMBAR VERTEBRA; NERVE CELL MEMBRANE CONDUCTANCE; NERVE CELL MEMBRANE STEADY POTENTIAL; PROCESS OPTIMIZATION; SIMULATION; SOMATOSENSORY CORTEX; WHOLE CELL PATCH CLAMP;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; COMPUTER SIMULATION; DENDRITES; MODELS, NEUROLOGICAL; NEOCORTEX; NUMERICAL ANALYSIS, COMPUTER-ASSISTED; POTASSIUM; POTASSIUM CHANNELS, VOLTAGE-GATED; PYRAMIDAL CELLS; RATS; RATS, WISTAR; REPRODUCIBILITY OF RESULTS; SODIUM; SODIUM CHANNELS; SOMATOSENSORY CORTEX;

EID: 63849182984     PISSN: 00223751     EISSN: 14697793     Source Type: Journal    
DOI: 10.1113/jphysiol.2008.167130     Document Type: Article

References (90)

1. Achard P & De Schutter E (2006). Complex parameter landscape for a complex neuron model. PLoS Comput Biol 2, e94.
2. Ambros-Ingerson J, Grover LM & Holmes WR (2008). A classification method to distinguish cell-specific responses elicited by current pulses in hippocampal CA1 pyramidal cells. Neural Comput 20, 1512-1536.
3. Amitai Y, Friedman A, Connors BW & Gutnick MJ (1993). Regenerative activity in apical dendrites of pyramidal cells in neocortex. Cereb Cortex 3, 26-38.
4. Antic SD (2003). Action potentials in basal and oblique dendrites of rat neocortical pyramidal neurons. J Physiol 550, 35-50.
5. Ariav G, Polsky A & Schiller J (2003). Submillisecond precision of the input-output transformation function mediated by fast sodium dendritic spikes in basal dendrites of CA1 pyramidal neurons. J Neurosci 23, 7750-7758.
6. Baranauskas G & Martina M (2006). Sodium currents activate without a Hodgkin-and-Huxley-type delay in central mammalian neurons. J Neurosci 26, 671-684.
7. Bekkers MJ (2000). Distribution and activation of voltage- gated potassium channels in cell-attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat. J Physiol 523, 611-620.
8. Benhassine N & Berger T (2005). Homogeneous distribution of large-conductance calcium-dependent potassium channels on soma and apical dendrite of rat neocortical layer 5 pyramidal neurons. Eur J Neurosci 21, 914-926.
9. Benhassine N & Berger T (2008). Large-conductance calcium-dependent potassium channels prevent dendritic excitability in neocortical pyramidal neurons. Pflugers Arch (in press).
10. Berger T, Larkum ME & Lüscher HR (2001). High I h channel density in the distal apical dendrite of layer V pyramidal cells increases bidirectional attenuation of EPSPs. J Neurophysiol 85, 855-868.
11. Bischofberger J & Jonas P (1997). Action potential propagation into the presynaptic dendrites of rat mitral cells. J Physiol 504, 359-365.
12. Bower JM & Beeman D (1994). The Book of GENESIS. Springer-Verlag, New-York.
13. Carnevale NT & Hines ML (2006). The NEURON Book. Cambridge University Press, Cambridge.
14. Chen WR, Midtgaard J & Shepherd GM (1997). Forward and backward propagation of dendritic impulses and their synaptic control in mitral cells. Science 278, 463-467.
15. Chen WR, Shen GY, Shepherd GM, Hines ML & Midtgaard J (2002). Multiple modes of action potential initiation and propagation in mitral cell primary dendrite. J Neurophysiol 88, 2755-2764.
16. Clements JD & Redman SJ (1989). Cable properties of cat spinal motoneurones measured by combining voltage clamp, current clamp and intracellular staining. J Physiol 409, 63-87.
17. De Schutter E (2008). Why are computational neuroscience and systems biology so separate? PLoS Comput Biol 4, e1000078.
18. Druckmann S, Banitt Y, Gidon AA, Schürmann F, Markram H & Segev I (2007). A novel multiple objective optimization framework for constraining conductance-based neuron models by experimental data. Front Neurosci 1, 7-18.
19. Druckmann S, Berger TK, Hill S, Schürmann F, Markram H & Segev I (2008). Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data. Biol Cybern 99, 371-379.
20. Eichler West RM (1996). On the development and interpretation of parameter manifolds for biophysically roubust compartementsl model of CA3 hippocampal neurons. PhD Thesis, University of Minessota.
21. Gasparini S & Magee JC (2006). State-dependent dendritic computation in hippocampal CA1 pyramidal neurons. J Neurosci 26, 2088-2100.
22. Gasparini S, Migliore M & Magee JC (2004). On the initiation and propagation of dendritic spikes in CA1 pyramidal neurons. J Neurosci 24, 11046-11056.
23. Gold C, Henze DA & Koch C (2007). Using extracellular action potential recordings to constrain compartmental models. J Comput Neurosci 23, 39-58.
24. Golding NL, Staff NP & Spruston N (2002). Dendritic spikes as a mechanism for cooperative long-term potentiation. Nature 418, 326-331.
25. Goldman MS, Golowasch J, Marder E & Abbott LF (2001). Global structure, robustness, and modulation of neuronal models. J Neurosci 21, 5229-5238.
26. Golowasch J, Goldman MS, Abbott LF & Marder E (2002). Failure of averaging in the construction of a conductance- based neuron model. J Neurophysiol 87, 1129-1131.
27. Günay C, Edgerton JR & Jaeger D (2008). Channel density distributions explain spiking variability in the globus pallidus: A combined physiology and computer simulation database approach. J Neurosci 28, 7476-7491.
28. Gurkiewicz M & Korngreen A (2007). A numerical approach to ion channel modelling using whole-cell voltage-clamp recordings and a genetic algorithm. PLoS Comput Biol 3, e169.
29. Häusser M, Stuart G, Racca C & Sakmann B (1995). Axonal initiation and active dendritic propagation of action potentials in substantia nigra neurons. Neuron 15, 637-647.
30. Hines ML & Carnevale NT (1997). The NEURON simulation environment. Neural Comput 9, 1179-1209.
31. Hines ML & Carnevale NT (2000). Expanding NEURON's repertoire of mechanisms with NMODL. Neural Comput 12, 995-1007.
32. Hodgkin AL & Huxley AF (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117, 500-544.
33. + channel regulation of signal propagation in dendrites of hippocampal pyramidal neurons. Nature 387, 869-875.
34. Holmes WR, Ambros-Ingerson J & Grover LM (2006). Fitting experimental data to models that use morphological data from public databases. J Comput Neurosci 20, 349-365.
35. Huys QJ, Ahrens MB & Paninski L (2006). Efficient estimation of detailed single-neuron models. J Neurophysiol 96, 872-890.
36. Johnston D, Christie BR, Frick A, Gray R, Hoffman DA, Schexnayder LK, Watanabe S & Yuan LL (2003). Active dendrites, potassium channels and synaptic plasticity. Philos Trans R Soc Lond B Biol Sci 358, 667-674.
37. Kang J, Huguenard JR & Prince DA (1996). Development of BK channels in neocortical pyramidal neurons. J Neurophysiol 76, 188-198.
38. Keren N, Peled N & Korngreen A (2005). Constraining compartmental models using multiple voltage recordings and genetic algorithms. J Neurophysiol 94, 3730-3742.
39. Koch C (1999). Biophysics of Computation. Oxford University Press, Oxford.
40. + channels in layer 5 neocortical pyramidal neurones from young rats: Subtypes and gradients. J Physiol 523, 621-639.
41. Larkum ME, Kaiser KM & Sakmann B (1999a). Calcium electrogenesis in distal apical dendrites of layer 5 pyramidal cells at a critical frequency of back-propagating action potentials. Proc Natl Acad Sci U S A 96, 14600-14604.
42. Larkum ME, Zhu JJ & Sakmann B (1999b). A new cellular mechanism for coupling inputs arriving at different cortical layers. Nature 398, 338-341.
43. Larkum ME, Zhu JJ & Sakmann B (2001). Dendritic mechanisms underlying the coupling of the dendritic with the axonal action potential initiation zone of adult rat layer 5 pyramidal neurons. J Physiol 533, 447-466.
44. LeMasson G & Maex R (2001). Introduction ot equation solving and parameter fitting. In Computational Neuroscience: Realistic Modelling for Experimentalists, ed. De Schutter E, pp. 1-25. CRC Press, London.
45. London M & Häusser M (2005). Dendritic computation. Annu Rev Neurosci 28, 503-532.
46. Losonczy A & Magee JC (2006). Integrative properties of radial oblique dendrites in hippocampal CA1 pyramidal neurons. Neuron 50, 291-307.
47. Magee J, Hoffman D, Colbert C & Johnston D (1998). Electrical and calcium signaling in dendrites of hippocampal pyramidal neurons. Annu Rev Physiol 60, 327-346.
48. h normalizes temporal summation in hippocampal CA1 neurons. Nat Neurosci 2, 508-514.
49. 2+ channels in apical dendrites of rat CA1 pyramidal neurons. J hysiol 487, 67-90.
50. Magee JC & Johnston D (1997). A synaptically controlled, associative signal for Hebbian plasticity in hippocampal neurons. Science 275, 209-213.
51. Magee JC & Johnston D (2005). Plasticity of dendritic function. Curr Opin Neurobiol 15, 334-342.
52. Mainen ZF, Joerges J, Huguenard JR & Sejnowski TJ (1995). A model of spike initiation in neocortical pyramidal neurons. Neuron 15, 1427-1439.
53. Major G, Larkman AU, Jonas P, Sakmann B & Jack JJ (1994). Detailed passive cable models of whole-cell recorded CA3 pyramidal neurons in rat hippocampal slices. J Neurosci 14, 4613-4638.
54. Markram H, Lübke J, Frotscher M & Sakmann B (1997). Regulation of synaptic efficacy by coincidence of postsynaptic APs and EPSPs. Science 275, 213-215.
55. Martina M, Vida I & Jonas P (2000). Distal initiation and active propagation of action potentials in interneuron dendrites. Science 287, 295-300.
56. Migliore M, Cannia C, Lytton WW, Markram H & Hines ML (2006). Parallel network simulations with NEURON. J Comput Neurosci 21, 119-129.
57. Migliore M & Shepherd GM (2002). Emerging rules for the distributions of active dendritic conductances. Nat Rev Neurosci 3, 362-370.
58. Milescu LS, Yamanishi T, Ptak K, Mogri MZ & Smith JC (2008). Real-time kinetic modeling of voltage-gated ion channels using dynamic clamp. Biophys J 95, 66-87.
59. Mitchell M (1996). An Introduction to Genetic Algorithms. MIT Press, Cambridge, MA.
60. Nowotny T, Levi R & Selverston AI (2008). Probing the dynamics of identified neurons with a data-driven modeling approach. PLoS ONE 3, e2627.
61. Nowotny T, Szucs A, Levi R & Selverston AI (2007). Models wagging the dog: Are circuits constructed with disparate parameters? Neural Comput 19, 1985-2003.
62. Poirazi P, Brannon T & Mel BW (2003). Pyramidal neuron as two-layer neural network. Neuron 37, 989-999.
63. Polsky A, Mel BW & Schiller J (2004). Computational subunits in thin dendrites of pyramidal cells. Nat Neurosci 7, 621-627.
64. Prinz AA, Billimoria CP & Marder E (2003). Alternative to hand-tuning conductance-based models: Construction and analysis of databases of model neurons. J Neurophysiol 90, 3998-4015.
65. Prinz AA, Bucher D & Marder E (2004). Similar network activity from disparate circuit parameters. Nat Neurosci 7, 1345-1352.
66. Rall W & Segev I (1985). Space clamp problems when voltage clamping branched neuron with intracellular microelectrodes. In Voltage and Patch Clamping with Microelectrodes, ed. Smith TG, Lecar H, Redman SJ & Gage PW, pp. 191-215. American Physiological Society, Bethesda, MD.
67. Roth A & Häusser M (2001). Compartmental models of rat cerebellar Purkinje cells based on simultaneous somatic and dendritic patch-clamp recordings. J Physiol 535, 445-472.
68. + conductance gradient in pyramidal neurones of neocortical layer 5B from rats. J Physiol 579, 737-752.
69. Schiller J, Major G, Koester HJ & Schiller Y (2000). NMDA spikes in basal dendrites of cortical pyramidal neurons. Nature 404, 285-289.
70. Schiller J, Schiller Y, Stuart G & Sakmann B (1997). Calcium action potentials restricted to distal apical dendrites of rat neocortical pyramidal neurons. J Physiol 505, 605-616.
71. Sjöström PJ, Rancz EA, Roth A & Häusser M (2008). Dendritic excitability and synaptic plasticity. Physiol Rev 88, 769-840.
72. Spruston N (2008). Pyramidal neurons: Dendritic structure and synaptic integration. Nat Rev Neurosci 9, 206-221.
73. Spruston N, Jaffe DB & Johnston D (1994). Dendritic attenuation of synaptic potentials and currents: The role of passive membrane properties. Trends Neurosci 17, 161-166.
74. Spruston N, Schiller Y, Stuart G & Sakmann B (1995). Activity-dependent action potential invasion and calcium influx into hippocampal CA1 dendrites. Science 268, 297-300.
75. Stiefel KM & Sejnowski TJ (2007). Mapping function onto neuronal morphology. J Neurophysiol 98, 513-526.
76. Stuart G, Schiller J & Sakmann B (1997a). Action potential initiation and propagation in rat neocortical pyramidal neurons. J Physiol 505, 617-632.
77. Stuart G & Spruston N (1998). Determinants of voltage attenuation in neocortical pyramidal neuron dendrites. J Neurosci 18, 3501-3510.
78. Stuart G, Spruston N & Häusser M (1999). Dendrites. Oxford University Press, Oxford.
79. Stuart G, Spruston N, Sakmann B & Häusser M (1997b). Action potential initiation and backpropagation in neurons of the mammalian CNS. Trends Neurosci 20, 125-131.
80. Stuart GJ, Dodt HU & Sakmann B (1993). Patch-clamp recordings from the soma and dendrites of neurons in brain slices using infrared video microscopy. Pflugers Arch 423, 511-518.
81. Stuart GJ & Häusser M (2001). Dendritic coincidence detection of EPSPs and action potentials. Nat Neurosci 4, 63-71.
82. Stuart GJ & Sakmann B (1994). Active propagation of somatic action potentials into neocortical pyramidal cell dendrites. Nature 367, 69-72.
83. Taylor AL, Hickey TJ, Prinz AA & Marder E (2006). Structure and visualization of high-dimensional conductance spaces. J Neurophysiol 96, 891-905.
84. Vanier MC & Bower JM (1999). A comparative survey of automated parameter-search methods for compartmental neural models. J Comput Neurosci 7, 149-171.
85. Waters J, Schaefer A & Sakmann B (2005). Backpropagating action potentials in neurones: Measurement, mechanisms and potential functions. Prog Biophys Mol Biol 87, 145-170.
86. Weaver CM & Wearne SL (2008). Neuronal firing sensitivity to morphologic and active membrane parameters. PLoS Comput Biol 4, e11.
87. Williams SR (2004). Spatial compartmentalization and functional impact of conductance in pyramidal neurons. Nat Neurosci 7, 961-967.
88. h in neocortical pyramidal neurons. J Neurophysiol 83, 3177-3182.
89. Willms AR, Baro DJ, Harris-Warrick RM & Guckenheimer J (1999). An improved parameter estimation method for Hodgkin-Huxley models. J Comput Neurosci 6, 145-168.
90. 2+ action potentials in adult rat tuft dendrites. J Physiol 526, 571-587.