메뉴 건너뛰기




Volumn 1, Issue 1, 2007, Pages 7-18

A Novel Multiple Objective Optimization Framework for Constraining Conductance-Based Neuron Models by Experimental Data

Author keywords

Compartmental model; cortical interneurons; firing pattern; multi objective optimization; noisy neurons

Indexed keywords

ARTICLE; COMPARTMENT MODEL; CONDUCTANCE; GENETIC ALGORITHM; HUMAN CELL; INTERNEURON; JUSTICE; MULTIOBJECTIVE OPTIMIZATION; NERVE CELL NETWORK; NOISE; SIMULATION; SPIKE;

EID: 85088891526     PISSN: 16624548     EISSN: 1662453X     Source Type: Journal    
DOI: 10.3389/neuro.01.1.1.001.2007     Document Type: Article
Times cited : (199)

References (53)
  • 1
    • 33746614853 scopus 로고    scopus 로고
    • Complex parameter landscape for a complex neuron model
    • Achard P., De Schutter E., (2006).Complex parameter landscape for a complex neuron model.PLoS Comput. Biol.2,e94.10.1371/journal.pcbi.0020094
    • (2006) PLoS Comput. Biol , vol.2 , pp. e94
    • Achard, P.1    De Schutter, E.2
  • 3
    • 0034659234 scopus 로고    scopus 로고
    • Distribution and activation of voltage-gated potassium channels in cell-attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat
    • a
    • Bekkers J. M., (2000a).Distribution and activation of voltage-gated potassium channels in cell-attached and outside-out patches from large layer 5 cortical pyramidal neurons of the rat.J. Physiol.525 Pt 3,611–620.
    • (2000) J. Physiol , vol.525 Pt 3 , pp. 611-620
    • Bekkers, J.M.1
  • 4
    • 0034659423 scopus 로고    scopus 로고
    • Properties of voltage-gated potassium currents in nucleated patches from large layer 5 cortical pyramidal neurons of the rat
    • b
    • Bekkers J. M., (2000b).Properties of voltage-gated potassium currents in nucleated patches from large layer 5 cortical pyramidal neurons of the rat.J. Physiol.525,593–609.10.1111/j.1469-7793.2000.t01-1-00593.x
    • (2000) J. Physiol , vol.525 , pp. 593-609
    • Bekkers, J.M.1
  • 5
    • 0035889976 scopus 로고    scopus 로고
    • Self-organized synaptic plasticity contributes to the shaping of gamma and beta oscillations in vitro
    • 11698616
    • Bibbig A., Faulkner H. J., Whittington M. A., Traub R. D., (2001).Self-organized synaptic plasticity contributes to the shaping of gamma and beta oscillations in vitro.J. Neurosci.21,9053–9067.11698616
    • (2001) J. Neurosci , vol.21 , pp. 9053-9067
    • Bibbig, A.1    Faulkner, H.J.2    Whittington, M.A.3    Traub, R.D.4
  • 7
    • 33745298475 scopus 로고    scopus 로고
    • Cambridge, New York, Cambridge University Press
    • Carnevale N. T., Hines M. L., (2005).The NEURON book(Cambridge, New York, Cambridge University Press).
    • (2005) The NEURON book
    • Carnevale, N.T.1    Hines, M.L.2
  • 8
    • 0242564957 scopus 로고
    • Multicriteria programming: Brief review and application
    • Gero J.S., (ed), New York, NY, Academic Press, ed
    • Cohon J. L., (1985).Multicriteria programming: Brief review and application.In Design OptimizationGero J. S., ed.(New York, NY, Academic Press).
    • (1985) Design Optimization
    • Cohon, J.L.1
  • 9
    • 0028013351 scopus 로고
    • An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice
    • De Schutter E., Bower J. M., (1994).An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice.J. Neurophysiol.71,375–400.
    • (1994) J. Neurophysiol , vol.71 , pp. 375-400
    • De Schutter, E.1    Bower, J.M.2
  • 11
    • 0000991259 scopus 로고
    • Simulated binary crossover for continuous search space
    • Deb K., Agarawal R. B., (1995)Simulated binary crossover for continuous search space.Complex Syst.9,115–148.
    • (1995) Complex Syst , vol.9 , pp. 115-148
    • Deb, K.1    Agarawal, R.B.2
  • 14
    • 0035879262 scopus 로고    scopus 로고
    • Global structure, robustness, and modulation of neuronal models
    • 11438598
    • Goldman M. S., Golowasch J., Marder E., Abbott L. F., (2001).Global structure, robustness, and modulation of neuronal models.J. Neurosci.21,5229–5238.11438598
    • (2001) J. Neurosci , vol.21 , pp. 5229-5238
    • Goldman, M.S.1    Golowasch, J.2    Marder, E.3    Abbott, L.F.4
  • 15
    • 0036092811 scopus 로고    scopus 로고
    • Failure of averaging in the construction of a conductance-based neuron model
    • Golowasch J., Goldman M. S., Abbott L. F., Marder E., (2002).Failure of averaging in the construction of a conductance-based neuron model.J. Neurophysiol.87,1129–1131.
    • (2002) J. Neurophysiol , vol.87 , pp. 1129-1131
    • Golowasch, J.1    Goldman, M.S.2    Abbott, L.F.3    Marder, E.4
  • 16
    • 0025718002 scopus 로고
    • Patch-clamp studies of voltage-gated currents in identified neurons of the rat cerebral cortex
    • 1668364
    • Hamill O. P., Huguenard J. R., Prince D. A., (1991).Patch-clamp studies of voltage-gated currents in identified neurons of the rat cerebral cortex.Cereb. Cortex1,48–61.10.1093/cercor/1.1.481668364
    • (1991) Cereb. Cortex , vol.1 , pp. 48-61
    • Hamill, O.P.1    Huguenard, J.R.2    Prince, D.A.3
  • 17
    • 33749595018 scopus 로고    scopus 로고
    • Modeling single-neuron dynamics and computations: A balance of detail and abstraction
    • 17023649
    • Herz A. V., Gollisch T., Machens C. K., Jaeger D., (2006).Modeling single-neuron dynamics and computations: A balance of detail and abstraction.Science314,80–85.10.1126/science.112724017023649
    • (2006) Science , vol.314 , pp. 80-85
    • Herz, A.V.1    Gollisch, T.2    Machens, C.K.3    Jaeger, D.4
  • 20
    • 28044461220 scopus 로고    scopus 로고
    • Constraining compartmental models using multiple voltage recordings and genetic algorithms
    • 16093338
    • Keren N., Peled N., Korngreen A., (2005).Constraining compartmental models using multiple voltage recordings and genetic algorithms.J. Neurophysiol.94,3730–3742.10.1152/jn.00408.200516093338
    • (2005) J. Neurophysiol , vol.94 , pp. 3730-3742
    • Keren, N.1    Peled, N.2    Korngreen, A.3
  • 21
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • 17813860
    • Kirkpatrick S., Gelatt C. D., Vecchi M. P., (1983).Optimization by simulated annealing.Science220,671–680.17813860
    • (1983) Science , vol.220 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt, C.D.2    Vecchi, M.P.3
  • 23
    • 0029796983 scopus 로고    scopus 로고
    • Small-conductance, calcium-activated potassium channels from mammalian brain
    • 8781233
    • Kohler M., Hirschberg B., Bond C. T., Kinzie J. M., Marrion N. V., Maylie J., Adelman J. P., (1996).Small-conductance, calcium-activated potassium channels from mammalian brain.Science273,1709–1714.10.1126/science.273.5282.17098781233
    • (1996) Science , vol.273 , pp. 1709-1714
    • Kohler, M.1    Hirschberg, B.2    Bond, C.T.3    Kinzie, J.M.4    Marrion, N.V.5    Maylie, J.6    Adelman, J.P.7
  • 24
    • 32544433137 scopus 로고    scopus 로고
    • Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output
    • 16467515
    • Kole M. H., Hallermann S., Stuart G. J., (2006).Single Ih channels in pyramidal neuron dendrites: properties, distribution, and impact on action potential output.J. Neurosci.26,1677–1687.10.1523/JNEUROSCI.3664-05.200616467515
    • (2006) J. Neurosci , vol.26 , pp. 1677-1687
    • Kole, M.H.1    Hallermann, S.2    Stuart, G.J.3
  • 25
    • 0034659415 scopus 로고    scopus 로고
    • Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients
    • Korngreen A., Sakmann B., (2000).Voltage-gated K+ channels in layer 5 neocortical pyramidal neurones from young rats: subtypes and gradients.J. Physiol.525,621–639.10.1111/j.1469-7793.2000.00621.x
    • (2000) J. Physiol , vol.525 , pp. 621-639
    • Korngreen, A.1    Sakmann, B.2
  • 26
    • 85050104585 scopus 로고    scopus 로고
    • Introduction to equation solving and parameter fitting
    • De Schutter E., (ed), Boca Raton, FL, CRC Press, ed
    • LeMasson G., Maex R., (2001),Introduction to equation solving and parameter fitting.In Computational Neuroscience,De Schutter E., ed.(Boca Raton, FL, CRC Press),pp. 1–24.
    • (2001) Computational Neuroscience , pp. 1-24
    • LeMasson, G.1    Maex, R.2
  • 27
    • 23244457444 scopus 로고    scopus 로고
    • Dendritic computation
    • 16033324
    • London M., Hausser M., (2005).Dendritic computation.Annu. Rev. Neurosci.28,503–532.10.1146/annurev.neuro.28.061604.13570316033324
    • (2005) Annu. Rev. Neurosci , vol.28 , pp. 503-532
    • London, M.1    Hausser, M.2
  • 28
    • 0037426924 scopus 로고    scopus 로고
    • Activity-independent homeostasis in rhythmically active neurons
    • 12526777
    • MacLean J. N., Zhang Y., Johnson B. R., Harris-Warrick R. M., (2003).Activity-independent homeostasis in rhythmically active neurons.Neuron37,109–120.10.1016/S0896-6273(02)01104-212526777
    • (2003) Neuron , vol.37 , pp. 109-120
    • MacLean, J.N.1    Zhang, Y.2    Johnson, B.R.3    Harris-Warrick, R.M.4
  • 29
    • 0032843750 scopus 로고    scopus 로고
    • Biophysical properties and slow voltage-dependent inactivation of a sustained sodium current in entorhinal cortex layer-II principal neurons: a whole-cell and single-channel study
    • 10498669
    • Magistretti J., Alonso A., (1999).Biophysical properties and slow voltage-dependent inactivation of a sustained sodium current in entorhinal cortex layer-II principal neurons: a whole-cell and single-channel study.J. Gen. Physiol.114,491–509.10.1085/jgp.114.4.49110498669
    • (1999) J. Gen. Physiol , vol.114 , pp. 491-509
    • Magistretti, J.1    Alonso, A.2
  • 30
    • 0029584238 scopus 로고
    • A model of spike initiation in neocortical pyramidal neurons
    • 8845165
    • Mainen Z. F., Joerges J., Huguenard J. R., Sejnowski T. J., (1995).A model of spike initiation in neocortical pyramidal neurons.Neuron15,1427–1439.10.1016/0896-6273(95)90020-98845165
    • (1995) Neuron , vol.15 , pp. 1427-1439
    • Mainen, Z.F.1    Joerges, J.2    Huguenard, J.R.3    Sejnowski, T.J.4
  • 31
    • 0029030249 scopus 로고
    • Reliability of spike timing in neocortical neurons
    • 7770778
    • Mainen Z. F., Sejnowski T. J., (1995).Reliability of spike timing in neocortical neurons.Science268,1503–1506.7770778
    • (1995) Science , vol.268 , pp. 1503-1506
    • Mainen, Z.F.1    Sejnowski, T.J.2
  • 32
    • 33745712893 scopus 로고    scopus 로고
    • Variability, compensation and homeostasis in neuron and network function
    • 16791145
    • Marder E., Goaillard J. M., (2006).Variability, compensation and homeostasis in neuron and network function.Nat. Rev. Neurosci.7,563–574.10.1038/nrn194916791145
    • (2006) Nat. Rev. Neurosci , vol.7 , pp. 563-574
    • Marder, E.1    Goaillard, J.M.2
  • 36
    • 0030794495 scopus 로고    scopus 로고
    • Influence of low and high frequency inputs on spike timing in visual cortical neurons
    • 9276174
    • Nowak L. G., Sanchez-Vives M. V., McCormick D. A., (1997).Influence of low and high frequency inputs on spike timing in visual cortical neurons.Cereb. Cortex7,487–501.10.1093/cercor/7.6.4879276174
    • (1997) Cereb. Cortex , vol.7 , pp. 487-501
    • Nowak, L.G.1    Sanchez-Vives, M.V.2    McCormick, D.A.3
  • 38
    • 1642297171 scopus 로고    scopus 로고
    • The dynamic clamp comes of age
    • a
    • Prinz A. A., Abbott L. F., Marder E., (2004a).The dynamic clamp comes of age.Trends Neurosci.27,218–224.10.1016/j.tins.2004.02.004
    • (2004) Trends Neurosci , vol.27 , pp. 218-224
    • Prinz, A.A.1    Abbott, L.F.2    Marder, E.3
  • 39
    • 0348012925 scopus 로고    scopus 로고
    • Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons
    • 12944532
    • Prinz A. A., Billimoria C. P., Marder E., (2003).Alternative to hand-tuning conductance-based models: construction and analysis of databases of model neurons.J. Neurophysiol.90,3998–4015.10.1152/jn.00641.200312944532
    • (2003) J. Neurophysiol , vol.90 , pp. 3998-4015
    • Prinz, A.A.1    Billimoria, C.P.2    Marder, E.3
  • 40
    • 13744259954 scopus 로고    scopus 로고
    • Similar network activity from disparate circuit parameters
    • b
    • Prinz A. A., Bucher D., Marder E., (2004b).Similar network activity from disparate circuit parameters.Nat. Neurosci.7,1345–1352.10.1038/nn1352
    • (2004) Nat. Neurosci , vol.7 , pp. 1345-1352
    • Prinz, A.A.1    Bucher, D.2    Marder, E.3
  • 41
    • 0029958180 scopus 로고    scopus 로고
    • Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells
    • Rapp M., Yarom Y., Segev I., (1996).Modeling back propagating action potential in weakly excitable dendrites of neocortical pyramidal cells.Proc. Natl. Acad Sci. USA93,11985–11990.10.1073/pnas.93.21.11985
    • (1996) Proc. Natl. Acad Sci. USA , vol.93 , pp. 11985-11990
    • Rapp, M.1    Yarom, Y.2    Segev, I.3
  • 42
    • 0027332963 scopus 로고
    • Stepwise repolarization from Ca2+ plateaus in neocortical pyramidal cells: evidence for nonhomogeneous distribution of HVA Ca2+ channels in dendrites
    • 8229187
    • Reuveni I., Friedman A., Amitai Y., Gutnick M. J., (1993).Stepwise repolarization from Ca2+ plateaus in neocortical pyramidal cells: evidence for nonhomogeneous distribution of HVA Ca2+ channels in dendrites.J. Neurosci.13,4609–4621.8229187
    • (1993) J. Neurosci , vol.13 , pp. 4609-4621
    • Reuveni, I.1    Friedman, A.2    Amitai, Y.3    Gutnick, M.J.4
  • 43
    • 0035451064 scopus 로고    scopus 로고
    • Kv3 channels: voltage-gated K+ channels designed for high-frequency repetitive firing
    • 11506885
    • Rudy B., McBain C. J., (2001).Kv3 channels: voltage-gated K+ channels designed for high-frequency repetitive firing.Trends Neurosci.24,517–526.10.1016/S0166-2236(00)01892-011506885
    • (2001) Trends Neurosci , vol.24 , pp. 517-526
    • Rudy, B.1    McBain, C.J.2
  • 44
    • 0032185423 scopus 로고    scopus 로고
    • Ion channel stochasticity may be critical in determining the reliability and precision of spike timing
    • 9744892
    • Schneidman E., Freedman B., Segev I., (1998).Ion channel stochasticity may be critical in determining the reliability and precision of spike timing.Neural Comput.10,1679–1703.10.1162/0899766983000170899744892
    • (1998) Neural Comput , vol.10 , pp. 1679-1703
    • Schneidman, E.1    Freedman, B.2    Segev, I.3
  • 45
    • 33344464699 scopus 로고    scopus 로고
    • Variable channel expression in identified single and electrically coupled neurons in different animals
    • 16444270
    • Schulz D. J., Goaillard J. M., Marder E., (2006).Variable channel expression in identified single and electrically coupled neurons in different animals.Nat. Neurosci.9,356–362.10.1038/nn163916444270
    • (2006) Nat. Neurosci , vol.9 , pp. 356-362
    • Schulz, D.J.1    Goaillard, J.M.2    Marder, E.3
  • 46
    • 34548760721 scopus 로고    scopus 로고
    • Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression
    • Schulz D. J., Goaillard J. M., Marder E. E., (2007).Quantitative expression profiling of identified neurons reveals cell-specific constraints on highly variable levels of gene expression.Proc. Natl. Acad Sci. USA104,13187–13191.10.1073/pnas.0705827104
    • (2007) Proc. Natl. Acad Sci. USA , vol.104 , pp. 13187-13191
    • Schulz, D.J.1    Goaillard, J.M.2    Marder, E.E.3
  • 47
    • 0033376680 scopus 로고    scopus 로고
    • Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings
    • 10601436
    • Shen G. Y., Chen W. R., Midtgaard J., Shepherd G. M., Hines M. L., (1999).Computational analysis of action potential initiation in mitral cell soma and dendrites based on dual patch recordings.J. Neurophysiol.82,3006–3020.10601436
    • (1999) J. Neurophysiol , vol.82 , pp. 3006-3020
    • Shen, G.Y.1    Chen, W.R.2    Midtgaard, J.3    Shepherd, G.M.4    Hines, M.L.5
  • 48
    • 0242550879 scopus 로고    scopus 로고
    • Differences in spiking patterns among cortical neurons
    • 14629869
    • Shinomoto S., Shima K., Tanji J., (2003).Differences in spiking patterns among cortical neurons.Neural Comput.15,2823–2842.10.1162/08997660332251875914629869
    • (2003) Neural Comput , vol.15 , pp. 2823-2842
    • Shinomoto, S.1    Shima, K.2    Tanji, J.3
  • 49
    • 33746634744 scopus 로고    scopus 로고
    • Structure and visualization of high-dimensional conductance spaces
    • 16687617
    • Taylor A. L., Hickey T. J., Prinz A. A., Marder E., (2006).Structure and visualization of high-dimensional conductance spaces.J. Neurophysiol.96,891–905.10.1152/jn.00367.200616687617
    • (2006) J. Neurophysiol , vol.96 , pp. 891-905
    • Taylor, A.L.1    Hickey, T.J.2    Prinz, A.A.3    Marder, E.4
  • 51
    • 5044239577 scopus 로고    scopus 로고
    • Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in the rat neocortex
    • 15192011
    • Toledo-Rodriguez M., Blumenfeld B., Wu C., Luo J., Attali B., Goodman P., Markram H., (2004).Correlation maps allow neuronal electrical properties to be predicted from single-cell gene expression profiles in the rat neocortex.Cereb. Cortex14,1310–1327.10.1093/cercor/bhh09215192011
    • (2004) Cereb. Cortex , vol.14 , pp. 1310-1327
    • Toledo-Rodriguez, M.1    Blumenfeld, B.2    Wu, C.3    Luo, J.4    Attali, B.5    Goodman, P.6    Markram, H.7
  • 52
    • 0032875742 scopus 로고    scopus 로고
    • A comparative survey of automated parameter-search methods for compartmental neural models
    • 10515252
    • Vanier M. C., Bower J. M., (1999).A comparative survey of automated parameter-search methods for compartmental neural models.J. Comput. Neurosci.7,149–171.10.1023/A:100897200531610515252
    • (1999) J. Comput. Neurosci , vol.7 , pp. 149-171
    • Vanier, M.C.1    Bower, J.M.2
  • 53
    • 0029791918 scopus 로고    scopus 로고
    • Nature and precision of temporal coding in visual cortex: a metric-space analysis
    • 8871238
    • Victor J. D., Purpura K. P., (1996).Nature and precision of temporal coding in visual cortex: a metric-space analysis.J. Neurophysiol.76,1310–1326.8871238
    • (1996) J. Neurophysiol , vol.76 , pp. 1310-1326
    • Victor, J.D.1    Purpura, K.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.