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Volumn 1, Issue 1, 2009, Pages 58-69

Recombination and drug resistance in HIV: Population dynamics and stochasticity

Author keywords

Drug resistance; HIV; Population dynamics; Recombination

Indexed keywords

ARTICLE; HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; NONHUMAN; POPULATION DYNAMICS; POPULATION GENETICS; PRIORITY JOURNAL; PROBABILITY; STOCHASTIC MODEL; VIRUS RECOMBINATION; VIRUS RESISTANCE;

EID: 63149115427     PISSN: 17554365     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.epidem.2008.11.001     Document Type: Article
Times cited : (22)

References (33)
  • 1
    • 4944263648 scopus 로고    scopus 로고
    • A robust measure of HIV-1 population turnover within chronically infected individuals
    • Achaz G., Palmer S., Kearney M., Maldarelli F., Mellors J.W., et al. A robust measure of HIV-1 population turnover within chronically infected individuals. Mol. Biol. Evol. 21 (2004) 1902-1912
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1902-1912
    • Achaz, G.1    Palmer, S.2    Kearney, M.3    Maldarelli, F.4    Mellors, J.W.5
  • 2
    • 27144440023 scopus 로고    scopus 로고
    • Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1
    • Althaus C.L., and Bonhoeffer S. Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1. J. Virol. 79 (2005) 13572-13578
    • (2005) J. Virol. , vol.79 , pp. 13572-13578
    • Althaus, C.L.1    Bonhoeffer, S.2
  • 3
    • 0036471409 scopus 로고    scopus 로고
    • Addressing the challenges of adherence
    • Bartlett J.A. Addressing the challenges of adherence. J. Acquir. Immune Defic. Syndr. 29 Suppl 1 (2002) S2-S10
    • (2002) J. Acquir. Immune Defic. Syndr. , vol.29 , Issue.SUPPL. 1
    • Bartlett, J.A.1
  • 6
    • 1042291295 scopus 로고    scopus 로고
    • Recombination in HIV and the evolution of drug resistance: for better or for worse?
    • Bretscher M.T., Althaus C.L., Muller V., and Bonhoeffer S. Recombination in HIV and the evolution of drug resistance: for better or for worse?. Bioessays 26 (2004) 180-188
    • (2004) Bioessays , vol.26 , pp. 180-188
    • Bretscher, M.T.1    Althaus, C.L.2    Muller, V.3    Bonhoeffer, S.4
  • 7
    • 0031179130 scopus 로고    scopus 로고
    • Recombination in HIV: an important viral evolutionary strategy
    • Burke D.S. Recombination in HIV: an important viral evolutionary strategy. Emerg Infect Dis 3 (1997) 253-259
    • (1997) Emerg Infect Dis , vol.3 , pp. 253-259
    • Burke, D.S.1
  • 8
    • 34249693632 scopus 로고    scopus 로고
    • Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy
    • Carvajal-Rodriguez A., Crandall K.A., and Posada D. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. Infection Genetics and Evolution 7 (2007) 476-483
    • (2007) Infection Genetics and Evolution , vol.7 , pp. 476-483
    • Carvajal-Rodriguez, A.1    Crandall, K.A.2    Posada, D.3
  • 9
    • 0031458777 scopus 로고    scopus 로고
    • Test of synergistic interactions among deleterious mutations in bacteria
    • Elena S.F., and Lenski R.E. Test of synergistic interactions among deleterious mutations in bacteria. Nature 390 (1997) 395-398
    • (1997) Nature , vol.390 , pp. 395-398
    • Elena, S.F.1    Lenski, R.E.2
  • 10
    • 33747112447 scopus 로고    scopus 로고
    • HIV recombination: what is the impact on antiretroviral therapy?
    • Fraser C. HIV recombination: what is the impact on antiretroviral therapy?. J. R. Soc. Interface 2 (2005) 489-503
    • (2005) J. R. Soc. Interface , vol.2 , pp. 489-503
    • Fraser, C.1
  • 11
    • 0035870599 scopus 로고    scopus 로고
    • Quantification of in vivo replicative capacity of HIV-1 in different compartments of infected cells
    • Funk G.a., Fischer M., Joos B., Opravil M., Gunthard H.F., et al. Quantification of in vivo replicative capacity of HIV-1 in different compartments of infected cells. J. Acquir. Immune Defic. Syndr. 26 (2001) 397-404
    • (2001) J. Acquir. Immune Defic. Syndr. , vol.26 , pp. 397-404
    • Funk, G.a.1    Fischer, M.2    Joos, B.3    Opravil, M.4    Gunthard, H.F.5
  • 12
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulation of chemically reacting systems
    • Gillespie D.T. Approximate accelerated stochastic simulation of chemically reacting systems. J. Chem. Phys. 115 (2001) 1716-1733
    • (2001) J. Chem. Phys. , vol.115 , pp. 1716-1733
    • Gillespie, D.T.1
  • 13
    • 0028874048 scopus 로고
    • Rapid turnover of plasma virions and Cd4 lymphocytes in Hiv-1 infection
    • Ho D.D., Neumann a.U., Perelson a.S., Chen W., Leonard J.M., et al. Rapid turnover of plasma virions and Cd4 lymphocytes in Hiv-1 infection. Nature 373 (1995) 123-126
    • (1995) Nature , vol.373 , pp. 123-126
    • Ho, D.D.1    Neumann, a.U.2    Perelson, a.S.3    Chen, W.4    Leonard, J.M.5
  • 15
    • 33751021082 scopus 로고    scopus 로고
    • Stochastic or deterministic: what is the effective population size of HIV-1?
    • Kouyos R.D., Althaus C.L., and Bonhoeffer S. Stochastic or deterministic: what is the effective population size of HIV-1?. Trends Microbiol. 14 (2006) 507-511
    • (2006) Trends Microbiol. , vol.14 , pp. 507-511
    • Kouyos, R.D.1    Althaus, C.L.2    Bonhoeffer, S.3
  • 16
    • 0004732896 scopus 로고    scopus 로고
    • Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
    • Leigh Brown A.J. Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 1862-1865
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 1862-1865
    • Leigh Brown, A.J.1
  • 18
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky L.M., and Temin H.M. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69 (1995) 5087-5094
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 19
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky L.M., and Temin H.M. Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69 (1995) 5087-5094
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 20
    • 0032564366 scopus 로고    scopus 로고
    • Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy
    • Nijhuis M., Boucher C.A., Schipper P., Leitner T., Schuurman R., et al. Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 14441-14446
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 14441-14446
    • Nijhuis, M.1    Boucher, C.A.2    Schipper, P.3    Leitner, T.4    Schuurman, R.5
  • 21
    • 0030756525 scopus 로고    scopus 로고
    • Viral dynamics of primary viremia and antiretroviral therapy in simian immunodeficiency virus infection
    • Nowak M.A., Lloyd A.L., Vasquez G.M., Wiltrout T.A., Wahl L.M., et al. Viral dynamics of primary viremia and antiretroviral therapy in simian immunodeficiency virus infection. J. Virol. 71 (1997) 7518-7525
    • (1997) J. Virol. , vol.71 , pp. 7518-7525
    • Nowak, M.A.1    Lloyd, A.L.2    Vasquez, G.M.3    Wiltrout, T.A.4    Wahl, L.M.5
  • 22
    • 0035543310 scopus 로고    scopus 로고
    • Selection for recombination in small populations
    • Otto S.P., and Barton N.H. Selection for recombination in small populations. Evolution 55 (2001) 1921-1931
    • (2001) Evolution , vol.55 , pp. 1921-1931
    • Otto, S.P.1    Barton, N.H.2
  • 23
    • 0036209507 scopus 로고    scopus 로고
    • Resolving the paradox of sex and recombination
    • Otto S.P., and Lenormand T. Resolving the paradox of sex and recombination. Nat. Rev. Genet. 3 (2002) 252-261
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 252-261
    • Otto, S.P.1    Lenormand, T.2
  • 24
    • 0030952479 scopus 로고    scopus 로고
    • Decay characteristics of HIV-1-infected compartments during combination therapy
    • Perelson A.S., Essunger P., Cao Y.Z., Vesanen M., Hurley A., et al. Decay characteristics of HIV-1-infected compartments during combination therapy. Nature 387 (1997) 188-191
    • (1997) Nature , vol.387 , pp. 188-191
    • Perelson, A.S.1    Essunger, P.2    Cao, Y.Z.3    Vesanen, M.4    Hurley, A.5
  • 25
    • 0033589745 scopus 로고    scopus 로고
    • Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis
    • Ramratnam B., Bonhoeffer S., Binley J., Hurley A., Zhang L.Q., et al. Rapid production and clearance of HIV-1 and hepatitis C virus assessed by large volume plasma apheresis. Lancet 354 (1999) 1782-1785
    • (1999) Lancet , vol.354 , pp. 1782-1785
    • Ramratnam, B.1    Bonhoeffer, S.2    Binley, J.3    Hurley, A.4    Zhang, L.Q.5
  • 26
    • 0034608864 scopus 로고    scopus 로고
    • Production of resistant HIV mutants during antiretroviral therapy
    • Ribeiro R.M., and Bonhoeffer S. Production of resistant HIV mutants during antiretroviral therapy. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 7681-7686
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 7681-7686
    • Ribeiro, R.M.1    Bonhoeffer, S.2
  • 28
    • 0032824180 scopus 로고    scopus 로고
    • Linkage disequilibrium test implies a large effective population number for HIV in vivo
    • Rouzine I.M., and Coffin J.M. Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 10758-10763
    • (1999) Proc. Natl. Acad. Sci. U. S. A. , vol.96 , pp. 10758-10763
    • Rouzine, I.M.1    Coffin, J.M.2
  • 29
    • 0036234481 scopus 로고    scopus 로고
    • Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach
    • Seo T.K., Thorne J.L., Hasegawa M., and Kishino H. Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach. Genetics 160 (2002) 1283-1293
    • (2002) Genetics , vol.160 , pp. 1283-1293
    • Seo, T.K.1    Thorne, J.L.2    Hasegawa, M.3    Kishino, H.4
  • 30
    • 1942421715 scopus 로고    scopus 로고
    • Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection
    • Shriner D., Shankarappa R., Jensen M.A., Nickle D.C., Mittler J.E., et al. Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection. Genetics 166 (2004) 1155-1164
    • (2004) Genetics , vol.166 , pp. 1155-1164
    • Shriner, D.1    Shankarappa, R.2    Jensen, M.A.3    Nickle, D.C.4    Mittler, J.E.5
  • 31
    • 3142543968 scopus 로고    scopus 로고
    • Binomial leap methods for simulating stochastic chemical kinetics
    • Tian T.H., and Burrage K. Binomial leap methods for simulating stochastic chemical kinetics. J. Chem. Phys. 121 (2004) 10356-10364
    • (2004) J. Chem. Phys. , vol.121 , pp. 10356-10364
    • Tian, T.H.1    Burrage, K.2
  • 32
    • 0034701490 scopus 로고    scopus 로고
    • Adherence and drug resistance: predictions for therapy outcome
    • Wahl L.M., and Nowak M.A. Adherence and drug resistance: predictions for therapy outcome. Proc. R. Soc. Lond., B Biol. Sci. 267 (2000) 835-843
    • (2000) Proc. R. Soc. Lond., B Biol. Sci. , vol.267 , pp. 835-843
    • Wahl, L.M.1    Nowak, M.A.2
  • 33
    • 0028811974 scopus 로고
    • Viral dynamics in human-immunodeficiency-virus type-1 infection
    • Wei X.P., Ghosh S.K., Taylor M.E., Johnson V.a., Emini E.a., et al. Viral dynamics in human-immunodeficiency-virus type-1 infection. Nature 373 (1995) 117-122
    • (1995) Nature , vol.373 , pp. 117-122
    • Wei, X.P.1    Ghosh, S.K.2    Taylor, M.E.3    Johnson, V.a.4    Emini, E.a.5


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