메뉴 건너뛰기




Volumn 83, Issue 6, 2009, Pages 2500-2509

Discovery of a novel single-stranded DNA virus from a sea turtle fibropapilloma by using viral metagenomics

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA; VIRUS DNA;

EID: 62749189896     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.01946-08     Document Type: Article
Times cited : (112)

References (69)
  • 1
    • 0034161696 scopus 로고    scopus 로고
    • Immunopathogenesis of chicken anemia virus infection
    • Adair, B. M. 2000. Immunopathogenesis of chicken anemia virus infection. Dev. Comp. Immunol. 24:247-255.
    • (2000) Dev. Comp. Immunol , vol.24 , pp. 247-255
    • Adair, B.M.1
  • 2
    • 0028185975 scopus 로고
    • Evaluation of Hawaiian green turtles (Chelonia-Mydas) for potential pathogens associated with fibropapillomas
    • Aguirre, A. A., G. H. Balazs, B. Zimmerman, and T. R. Spraker. 1994. Evaluation of Hawaiian green turtles (Chelonia-Mydas) for potential pathogens associated with fibropapillomas. J. Wildl. Dis. 30:8-15.
    • (1994) J. Wildl. Dis , vol.30 , pp. 8-15
    • Aguirre, A.A.1    Balazs, G.H.2    Zimmerman, B.3    Spraker, T.R.4
  • 7
    • 64249132807 scopus 로고    scopus 로고
    • Balazs, G. H. 1991. Current status of fibropapillomas in the Hawaiian green turtle, Chelonia mydas, p. 47-57. In G. H. Balazs and S. Pooley (ed.), Research plan for marine turtle fibropapilloma. U.S. Department of Commerce NOAA Technical Memorandum NMFS-SWFSC-157. National Oceanic and Atmospheric Administration, Washington, DC.
    • Balazs, G. H. 1991. Current status of fibropapillomas in the Hawaiian green turtle, Chelonia mydas, p. 47-57. In G. H. Balazs and S. Pooley (ed.), Research plan for marine turtle fibropapilloma. U.S. Department of Commerce NOAA Technical Memorandum NMFS-SWFSC-157. National Oceanic and Atmospheric Administration, Washington, DC.
  • 9
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 14
    • 33644873469 scopus 로고    scopus 로고
    • Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
    • Breitbart, M., and F. Rohwer. 2005. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Bio-Techniques 39:729-736.
    • (2005) Bio-Techniques , vol.39 , pp. 729-736
    • Breitbart, M.1    Rohwer, F.2
  • 16
    • 14944358901 scopus 로고    scopus 로고
    • Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes
    • Cann, A. J., S. E. Fandrich, and S. Heaphy. 2005. Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes. Virus Genes 30:151-156.
    • (2005) Virus Genes , vol.30 , pp. 151-156
    • Cann, A.J.1    Fandrich, S.E.2    Heaphy, S.3
  • 17
  • 19
    • 64249118298 scopus 로고    scopus 로고
    • Ph.D. thesis. The role of herpesviruses in marine turtle diseases. University of Florida, Gainesville, FL
    • Coberley, S. S. 2002. Ph.D. thesis. The role of herpesviruses in marine turtle diseases. University of Florida, Gainesville, FL.
    • (2002)
    • Coberley, S.S.1
  • 20
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localization signals
    • Cokol, M., R. Nair, and B. Rost. 2000. Finding nuclear localization signals. EMBO Rep. 1:411-415.
    • (2000) EMBO Rep , vol.1 , pp. 411-415
    • Cokol, M.1    Nair, R.2    Rost, B.3
  • 22
    • 33745513227 scopus 로고    scopus 로고
    • Metagenomic analysis of coastal RNA virus communities
    • Culley, A. I., A. S. Lang, and C. A. Suttle. 2006. Metagenomic analysis of coastal RNA virus communities. Science 312:1795-1798.
    • (2006) Science , vol.312 , pp. 1795-1798
    • Culley, A.I.1    Lang, A.S.2    Suttle, C.A.3
  • 23
    • 33947607974 scopus 로고    scopus 로고
    • Viral metagenomics
    • Delwart, E. L. 2007. Viral metagenomics. Rev. Med. Virol. 17:115-131.
    • (2007) Rev. Med. Virol , vol.17 , pp. 115-131
    • Delwart, E.L.1
  • 26
    • 37849014296 scopus 로고    scopus 로고
    • Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus
    • Duffy, S., and E. C. Holmes. 2008. Phylogenetic evidence for rapid rates of molecular evolution in the single-stranded DNA begomovirus Tomato yellow leaf curl virus. J. Virol. 82:957-965.
    • (2008) J. Virol , vol.82 , pp. 957-965
    • Duffy, S.1    Holmes, E.C.2
  • 27
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: Patterns and determinants
    • Duffy, S., L. A. Shackelton, and E. C. Holmes. 2008. Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 9:267-276.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 267-276
    • Duffy, S.1    Shackelton, L.A.2    Holmes, E.C.3
  • 29
    • 1642271492 scopus 로고    scopus 로고
    • A parvovirus isolated from royal python (Python regius) is a member of the genus Dependovirus
    • Farkas, S. L., Z. Zadori, M. Benko, S. Essbauer, B. Harrach, and P. Tijssen. 2004. A parvovirus isolated from royal python (Python regius) is a member of the genus Dependovirus. J. Gen. Virol. 85:555-561.
    • (2004) J. Gen. Virol , vol.85 , pp. 555-561
    • Farkas, S.L.1    Zadori, Z.2    Benko, M.3    Essbauer, S.4    Harrach, B.5    Tijssen, P.6
  • 30
    • 35148898713 scopus 로고    scopus 로고
    • Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma
    • Feng, H. C., J. L. Taylor, P. V. Benos, R. Newton, K. Waddell, S. B. Lucas, Y. Chang, and P. S. Moore. 2007. Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma. J. Virol. 81:11332-11340.
    • (2007) J. Virol , vol.81 , pp. 11332-11340
    • Feng, H.C.1    Taylor, J.L.2    Benos, P.V.3    Newton, R.4    Waddell, K.5    Lucas, S.B.6    Chang, Y.7    Moore, P.S.8
  • 31
    • 35948953592 scopus 로고    scopus 로고
    • Fierer, N., M. Breitbart, J. Nulton, P. Salamon, C. Lozupone, R. Jones, M. Robeson, R. A. Edwards, B. Felts, S. Rayhawk, R. Knight, F. Rohwer, and R. B. Jackson. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl. Environ. Microbiol. 73:7059-7066.
    • Fierer, N., M. Breitbart, J. Nulton, P. Salamon, C. Lozupone, R. Jones, M. Robeson, R. A. Edwards, B. Felts, S. Rayhawk, R. Knight, F. Rohwer, and R. B. Jackson. 2007. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl. Environ. Microbiol. 73:7059-7066.
  • 32
    • 18444391203 scopus 로고    scopus 로고
    • Fibropapillomatosis in stranded green turtles (Chelonia mydas) from the eastern United States (1980-98): Trends and associations with environmental factors
    • Foley, A M., B. A. Schroeder, A. E. Redlow, K. J. Fick-Child, and W. G. Teas. 2005. Fibropapillomatosis in stranded green turtles (Chelonia mydas) from the eastern United States (1980-98): trends and associations with environmental factors. J. Wildl. Dis. 41:29-41.
    • (2005) J. Wildl. Dis , vol.41 , pp. 29-41
    • Foley, A.M.1    Schroeder, B.A.2    Redlow, A.E.3    Fick-Child, K.J.4    Teas, W.G.5
  • 33
    • 34249787638 scopus 로고    scopus 로고
    • Genetic structure and population variability of tomato yellow leaf curl China virus
    • Ge, L. M., J. T. Zhang, X. P. Zhou, and H. Y. Li. 2007. Genetic structure and population variability of tomato yellow leaf curl China virus. J. Virol. 81: 5902-5907.
    • (2007) J. Virol , vol.81 , pp. 5902-5907
    • Ge, L.M.1    Zhang, J.T.2    Zhou, X.P.3    Li, H.Y.4
  • 34
    • 11144225199 scopus 로고    scopus 로고
    • Genomic variation of the fibropapilloma-associated marine turtle herpesvirus across seven geographic areas and three host species
    • Greenblatt, R. J., S. L. Quackenbush, R. N. Casey, J. Rovnak, G. H. Balazs, T. M. Work, J. W. Casey, and C. A. Sutton. 2005. Genomic variation of the fibropapilloma-associated marine turtle herpesvirus across seven geographic areas and three host species. J. Virol. 79:1125-1132.
    • (2005) J. Virol , vol.79 , pp. 1125-1132
    • Greenblatt, R.J.1    Quackenbush, S.L.2    Casey, R.N.3    Rovnak, J.4    Balazs, G.H.5    Work, T.M.6    Casey, J.W.7    Sutton, C.A.8
  • 35
    • 0028311846 scopus 로고
    • Fibropapillomatosis of marine turtles
    • Herbst, L. 1994. Fibropapillomatosis of marine turtles. Annu Rev. Fish Dis. 4:389-425.
    • (1994) Annu Rev. Fish Dis , vol.4 , pp. 389-425
    • Herbst, L.1
  • 36
    • 0029167529 scopus 로고
    • Experimental transmission of green turtle fibropapillomatosis using cell-free tumor extracts
    • Herbst, L. H., E. R. Jacobson, R. Moretti, T. Brown, J. P. Sundberg, and P. A. Klein. 1995. Experimental transmission of green turtle fibropapillomatosis using cell-free tumor extracts. Dis. Aquat. Org. 22:1-12.
    • (1995) Dis. Aquat. Org , vol.22 , pp. 1-12
    • Herbst, L.H.1    Jacobson, E.R.2    Moretti, R.3    Brown, T.4    Sundberg, J.P.5    Klein, P.A.6
  • 37
    • 0000493791 scopus 로고    scopus 로고
    • Sensitivity of the transmissible green turtle fibropapillomatosis agent to chloroform and ultracentrifugation conditions
    • Herbst, L. H., R. Moretti, T. Brown, and P. A. Klein. 1996. Sensitivity of the transmissible green turtle fibropapillomatosis agent to chloroform and ultracentrifugation conditions. Dis. Aquat. Org. 25:225-228.
    • (1996) Dis. Aquat. Org , vol.25 , pp. 225-228
    • Herbst, L.H.1    Moretti, R.2    Brown, T.3    Klein, P.A.4
  • 38
    • 0029040945 scopus 로고
    • Arginine-rich regions succeeding the nuclear localization region of the herpes simplex virus type 1 regulatory protein ICP27 are required for efficient nuclear localization and late gene expression
    • Hibbard, M. K., and R. M. Sandrigoldin. 1995. Arginine-rich regions succeeding the nuclear localization region of the herpes simplex virus type 1 regulatory protein ICP27 are required for efficient nuclear localization and late gene expression. J. Virol. 69:4656-4667.
    • (1995) J. Virol , vol.69 , pp. 4656-4667
    • Hibbard, M.K.1    Sandrigoldin, R.M.2
  • 40
    • 20744441655 scopus 로고    scopus 로고
    • New DNA viruses identified in patients with acute viral infection syndrome
    • Jones, M. S., A. Kapoor, V. V. Lukashov, P. Simmonds, F. Hecht, and E. Delwart. 2005. New DNA viruses identified in patients with acute viral infection syndrome. J. Virol. 79:8230-8236.
    • (2005) J. Virol , vol.79 , pp. 8230-8236
    • Jones, M.S.1    Kapoor, A.2    Lukashov, V.V.3    Simmonds, P.4    Hecht, F.5    Delwart, E.6
  • 42
    • 0033774974 scopus 로고    scopus 로고
    • Three spliced mRNAs of TT virus transcribed from a plasmid containing the entire genome in COS1 cells
    • Kamahora, T., S. Hino, and H. Miyata. 2000. Three spliced mRNAs of TT virus transcribed from a plasmid containing the entire genome in COS1 cells. J. Virol. 74:9980-9986.
    • (2000) J. Virol , vol.74 , pp. 9980-9986
    • Kamahora, T.1    Hino, S.2    Miyata, H.3
  • 46
    • 0035918992 scopus 로고    scopus 로고
    • Nuclear localization of the ORF2 protein encoded by porcine circovirus type 2
    • Liu, Q. G., S. K. Tikoo, and L. A. Babiuk. 2001. Nuclear localization of the ORF2 protein encoded by porcine circovirus type 2. Virology 285:91-99.
    • (2001) Virology , vol.285 , pp. 91-99
    • Liu, Q.G.1    Tikoo, S.K.2    Babiuk, L.A.3
  • 47
    • 0033805859 scopus 로고    scopus 로고
    • Detection of herpesviral sequences in tissues of green turtles with fibropapilloma by polymerase chain reaction
    • Lu, Y., Y. Wang, Q. Yu, A. A. Aguirre, G. H. Balazs, V. R. Nerurkar, and R. Yanagihara. 2000. Detection of herpesviral sequences in tissues of green turtles with fibropapilloma by polymerase chain reaction. Arch. Virol. 145: 1885-1893.
    • (2000) Arch. Virol , vol.145 , pp. 1885-1893
    • Lu, Y.1    Wang, Y.2    Yu, Q.3    Aguirre, A.A.4    Balazs, G.H.5    Nerurkar, V.R.6    Yanagihara, R.7
  • 48
    • 0034009628 scopus 로고    scopus 로고
    • Identification of a small, naked virus in tumor-like aggregates in cell lines derived from a green turtle, Chelonia mydas, with fibropapillomas
    • Lu, Y. N., A. A. Aguirre, T. M. Work, G. H. Balazs, V. R. Nerurkar, and R. Yanagihara. 2000. Identification of a small, naked virus in tumor-like aggregates in cell lines derived from a green turtle, Chelonia mydas, with fibropapillomas J. Virol. Methods 86:25-33.
    • (2000) J. Virol. Methods , vol.86 , pp. 25-33
    • Lu, Y.N.1    Aguirre, A.A.2    Work, T.M.3    Balazs, G.H.4    Nerurkar, V.R.5    Yanagihara, R.6
  • 53
    • 18144384184 scopus 로고    scopus 로고
    • Human circovirus TT virus genotype 6 expresses six proteins following transfection of a full-length clone
    • Qiu, J. M., L. Kakkola, F. Cheng, C. Y. Ye, M. Soderlund-Venermo, M. Hedman, and D. J. Pintel. 2005. Human circovirus TT virus genotype 6 expresses six proteins following transfection of a full-length clone. J. Virol. 79:6505-6510.
    • (2005) J. Virol , vol.79 , pp. 6505-6510
    • Qiu, J.M.1    Kakkola, L.2    Cheng, F.3    Ye, C.Y.4    Soderlund-Venermo, M.5    Hedman, M.6    Pintel, D.J.7
  • 56
    • 11344262598 scopus 로고    scopus 로고
    • Isolation and cloning of a papillomavi-rus from a North American porcupine by using multiply primed rolling-circle amplification: The Erethizon dorsatum papillomavirus type 1
    • Rector, A., R. Tachezy, K. Van Doorslaer, T. MacNamara, R. D. Burk, J. P. Sundberg, and M. Van Ranst. 2005. Isolation and cloning of a papillomavi-rus from a North American porcupine by using multiply primed rolling-circle amplification: the Erethizon dorsatum papillomavirus type 1. Virology 331: 449-456.
    • (2005) Virology , vol.331 , pp. 449-456
    • Rector, A.1    Tachezy, R.2    Van Doorslaer, K.3    MacNamara, T.4    Burk, R.D.5    Sundberg, J.P.6    Van Ranst, M.7
  • 57
    • 2342599124 scopus 로고    scopus 로고
    • A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification
    • Rector, A., R. Tachezy, and M. Van Ranst. 2004. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J. Virol. 78:4993-4998.
    • (2004) J. Virol , vol.78 , pp. 4993-4998
    • Rector, A.1    Tachezy, R.2    Van Ranst, M.3
  • 58
    • 0029861952 scopus 로고    scopus 로고
    • A hypervariable region in VP1 of chicken infectious anemia virus mediates rate of spread and cell tropism in tissue culture
    • Renshaw, R. W., C. Soine, T. Weinkle, P. H. Oconnell, K. Ohashi, S. Watson, B. Lucio, S. Harrington, and K. A. Schat. 1996. A hypervariable region in VP1 of chicken infectious anemia virus mediates rate of spread and cell tropism in tissue culture. J. Virol. 70:8872-8878.
    • (1996) J. Virol , vol.70 , pp. 8872-8878
    • Renshaw, R.W.1    Soine, C.2    Weinkle, T.3    Oconnell, P.H.4    Ohashi, K.5    Watson, S.6    Lucio, B.7    Harrington, S.8    Schat, K.A.9
  • 59
    • 33645229142 scopus 로고    scopus 로고
    • Phylogenetic evidence for the rapid evolution of human B19 erythrovirus
    • Shackelton, L. A., and E. C. Holmes. 2006. Phylogenetic evidence for the rapid evolution of human B19 erythrovirus. J. Virol. 80:3666-3669.
    • (2006) J. Virol , vol.80 , pp. 3666-3669
    • Shackelton, L.A.1    Holmes, E.C.2
  • 60
    • 12244297403 scopus 로고    scopus 로고
    • High rate of viral evolution associated with the emergence of carnivore parvovirus
    • Shackelton, L. A., C. R. Parrish, U. Truyen, and E. C. Holmes. 2005. High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc. Natl. Acad. Sci. USA 102:379-384.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 379-384
    • Shackelton, L.A.1    Parrish, C.R.2    Truyen, U.3    Holmes, E.C.4
  • 61
    • 0000052511 scopus 로고
    • Fibro-epithelial growths of the skin in large marine turtles, Chelonia mydas (Linnaeus)
    • Smith, G., and C. Coates. 1938. Fibro-epithelial growths of the skin in large marine turtles, Chelonia mydas (Linnaeus). Zoologica 23:93-98.
    • (1938) Zoologica , vol.23 , pp. 93-98
    • Smith, G.1    Coates, C.2
  • 62
    • 0003117296 scopus 로고
    • Amplification of ribosomal RNA genes for molecular evolution studies
    • M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White ed, Academic Press, San Diego, CA
    • Sogin, M. L. 1990. Amplification of ribosomal RNA genes for molecular evolution studies, p. 307-314. In M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White (ed.), PCR protocols: a guide to methods and applications. Academic Press, San Diego, CA.
    • (1990) PCR protocols: A guide to methods and applications , pp. 307-314
    • Sogin, M.L.1
  • 63
    • 0033673326 scopus 로고    scopus 로고
    • Circoviruses: Immunosuppressive threats to avian species: a review
    • Todd, D. 2000. Circoviruses: immunosuppressive threats to avian species: a review. Avian Pathol. 29:373-394.
    • (2000) Avian Pathol , vol.29 , pp. 373-394
    • Todd, D.1
  • 64
    • 0035422347 scopus 로고    scopus 로고
    • Genome sequence determinations and analyses of novel circoviruses from goose and pigeon
    • Todd, D., J. H. Weston, D. Soike, and J. A. Smyth. 2001. Genome sequence determinations and analyses of novel circoviruses from goose and pigeon. Virology 286:354-362.
    • (2001) Virology , vol.286 , pp. 354-362
    • Todd, D.1    Weston, J.H.2    Soike, D.3    Smyth, J.A.4
  • 65
    • 0037116607 scopus 로고    scopus 로고
    • Observation of positive selection within hypervariable regions of a newly identified DNA virus (SEN virus)
    • Umemura, T., Y. Tanaka, K. Kiyosawa, H. J. Alter, and J. W. K. Shih. 2002. Observation of positive selection within hypervariable regions of a newly identified DNA virus (SEN virus). FEBS Lett. 510:171-174.
    • (2002) FEBS Lett , vol.510 , pp. 171-174
    • Umemura, T.1    Tanaka, Y.2    Kiyosawa, K.3    Alter, H.J.4    Shih, J.W.K.5
  • 67
    • 11144233081 scopus 로고    scopus 로고
    • Retrospective pathology survey of green turtles Chelonia mydas with fibropapillo-matosis in the Hawaiian Islands, 1993-2003
    • Work, T. M., G. H. Balazs, R. A. Rameyer, and R. A. Morris. 2004. Retrospective pathology survey of green turtles Chelonia mydas with fibropapillo-matosis in the Hawaiian Islands, 1993-2003. Dis. Aquat. Org. 62:163-176.
    • (2004) Dis. Aquat. Org , vol.62 , pp. 163-176
    • Work, T.M.1    Balazs, G.H.2    Rameyer, R.A.3    Morris, R.A.4
  • 68
    • 0035146680 scopus 로고    scopus 로고
    • Rapid acquisition of entire DNA polymerase gene of a novel herpesvirus from green turtle fibropapilloma by a genomic walking technique
    • Yu, Q. G., N. J. Hu, Y. N. Lu, V. R. Nerurkar, and R. Yanagihara. 2001. Rapid acquisition of entire DNA polymerase gene of a novel herpesvirus from green turtle fibropapilloma by a genomic walking technique. J. Virol. Methods 91:183-195.
    • (2001) J. Virol. Methods , vol.91 , pp. 183-195
    • Yu, Q.G.1    Hu, N.J.2    Lu, Y.N.3    Nerurkar, V.R.4    Yanagihara, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.