Single-Myb-histone proteins from Arabidopsis thaliana: A quantitative study of telomere-binding specificity and kinetics

Biochemical Journal

Volumn 419, Issue 1, 2009, Pages 221-228

  Hofr, Ctirad ^a   Šultesová, Pavla ^a   Zimmermann, Michal ^a   Mozgová, Iva ^a   Procházková Schrumpfová, Petra ^a   Wimmerová, Michaela ^a   Fajkus, Jiří ^b  

^a MASARYK UNIVERSITY   (Czech Republic)

^b INSTITUTE OF BIOPHYSICS   (Czech Republic)

Author keywords

Arabidopsis thaliana; Fluorescence anisotropy; Kinetics; Single Myb histone protein (SMH protein); Surface plasmon resonance; Telomere protein DNA interaction

Indexed keywords

ARABIDOPSIS THALIANA; BINDING FACTORS; BINDING SPECIFICITIES; DNA-BINDING; ELECTROPHORETIC MOBILITY SHIFT ASSAY; ELECTROSTATIC COMPONENTS; FLUORESCENCE ANISOTROPY; FULL-LENGTH PROTEINS; HISTONE PROTEINS; KINETIC ANALYSIS; QUANTITATIVE STUDY; SINGLE-MYB-HISTONE PROTEIN (SMH PROTEIN); TELOMERE; TELOMERE FUNCTION; TELOMERE PROTEIN-DNA INTERACTION; TELOMERES; TELOMERIC DNA; THALIANA;

ANISOTROPY; DNA; ELECTROPHORETIC MOBILITY; FLUORESCENCE; NUCLEIC ACIDS; PLASMONS; PROTEINS; STOICHIOMETRY; SURFACE PLASMON RESONANCE;

GENES;

ARABIDOPSIS PROTEIN; PROTEIN SMH; SINGLE MYB HISTONE PROTEIN; SODIUM CHLORIDE; UNCLASSIFIED DRUG; HISTONE;

ARABIDOPSIS; ARTICLE; BINDING AFFINITY; BINDING KINETICS; FLUORESCENCE ANALYSIS; GEL MOBILITY SHIFT ASSAY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN PROTEIN INTERACTION; QUANTITATIVE ANALYSIS; STOICHIOMETRY; SURFACE PLASMON RESONANCE; TELOMERE; BIOLOGICAL MODEL; FLUORESCENCE POLARIZATION; GENETICS; KINETICS; METABOLISM; PROTEIN BINDING;

ARABIDOPSIS THALIANA;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ELECTROPHORETIC MOBILITY SHIFT ASSAY; FLUORESCENCE POLARIZATION; HISTONES; KINETICS; MODELS, BIOLOGICAL; PROTEIN BINDING; SURFACE PLASMON RESONANCE; TELOMERE;

EID: 62749159378     PISSN: 02646021     EISSN: 14708728     Source Type: Journal    
DOI: 10.1042/BJ20082195     Document Type: Article

References (37)

1. Zakian, V. A. (1995) Telomeres: beginning to understand the end. Science 270, 1601-1607
2. Smogorzewska, A. and de Lange, T. (2004) Regulation of telomerase by telomeric proteins. Annu. Rev. Biochem. 73, 177-208
3. Griffith, J. D., Comeau, L., Rosenfield, S., Stansel, R. M., Bianchi, A., Moss, H. and de Lange, T. (1999) Mammalian telomeres end in a large duplex loop. Cell 97, 503-514
4. Cesare, A. J., Quinney, N., Willcox, S., Subramanian, D. and Griffith, J. D. (2003) Telomere looping in P. sativum (common garden pea). Plant J. 36, 271-279
5. Smogorzewska, A., van Steensel, B., Bianchi, A., Oelmann, S., Schaefer, M. R., Schnapp, G. and de Lange, T. (2000) Control of human telomere length by TRF1 and TRF2. Mol. Cell. Biol. 20, 1659-1668
6. Baumann, P. and Cech, T. R. (2001) Pot1, the putative telomere end-binding protein in fission yeast and humans. Science 292, 1171-1175
7. Hockemeyer, D., Sfeir, A. J., Shay, J. W., Wright, W. E. and de Lange, T. (2005) POT1 protects telomeres from a transient DNA damage response and determines how human chromosomes end. EMBO J. 24, 2667-2678
8. Bilaud, T., Koering, C. E., Binet-Brasselet, E., Ancelin, K., Pollice, A., Gasser, S. M. and Gilson, E. (1996) The telobox, a Myb-related telomeric DNA binding motif found in proteins from yeast, plants and human. Nucleic Acids Res. 24, 1294-1303
9. Kuchar, M. (2006) Plant telomere-binding proteins. Biol. Plant. 50, 1-7
10. Yang, S. W., Kim, S. K. and Kim, W. T. (2004) Perturbation of NgTRF1 expression induces apoptosis-like cell death in tobacco BY-2 cells and implicates NgTRF1 in the control of telomere length and stability. Plant Cell 16, 3370-3385
11. Hwang, M. G. and Cho, M. H. (2007) Arabidopsis thaliana telomeric DNA-binding protein 1 is required for telomere length homeostasis and its Myb-extension domain stabilizes plant telomeric DNA binding. Nucleic Acids Res. 35, 1333-1342
12. Marian, C. O., Bordoli, S. J., Goltz, M., Santarella, R. A., Jackson, L. P., Danilevskaya, O., Beckstette, M., Meeley, R. and Bass, H. W. (2003) The maize single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro. Plant Physiol. 133, 1336-1350
13. Schrumpfova, P., Kuchar, M., Mikova, G., Skrisovska, L., Kubicarova, T. and Fajkus, J. (2004) Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence. Genome 47, 316-324
14. Mozgova, I., Prochazkova Schrumpfova, P., Hofr, C. and Fajkus, J. (2008) Functional characterisation of domains in AtTRB1, a putative telomere-binding protein in Arabidopsis thaliana. Phytochemistry 69, 1814-1819
15. Prochazkova Schrumpfova, P., Kuchar, M., Palecek, J. and Fajkus, J. (2008) Mapping of interaction domains of putative telomere-binding proteins AtTRB1 and AtPOT1b from Arabidopsis thaliana. FEBS Lett. 582, 1400-1406
16. Kuchar, M. and Fajkus, J. (2004) Interactions of putative telomere-binding proteins in Arabidopsis thaliana: identification of functional TRF2 homolog in plants. FEBS Lett. 578, 311-315
17. Shakirov, E. V., Surovtseva, Y. V., Osbun, N. and Shippen, D. E. (2005) The Arabidopsis Pot1 and Pot2 proteins function in telomere length homeostasis and chromosome end protection. Mol. Cell. Biol. 25, 7725-7733
18. Sue, S. C., Hsiao, H. H., Chung, B. C., Cheng, Y. H., Hsueh, K. L., Chen, C. M., Ho, C. H. and Huang, T. H. (2006) Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix. J. Mol. Biol. 356, 72-85
19. Byun, M. Y., Hong, J. P. and Kim, W. T. (2008) Identification and characterization of three telomere repeat-binding factors in rice. Biochem. Biophys. Res. Commun. 372, 85-90
20. Heyduk, T. and Lee, J. C. (1990) Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction. Proc. Natl. Acad. Sci. U.S.A. 87, 1744-1748
21. LeTilly, V. and Royer, C. A. (1993) Fluorescence anisotropy assays implicate protein-protein interactions in regulating trp repressor DNA binding. Biochemistry 32, 7753-7758
22. Studier, F. W. (2005) Protein production by auto-induction in high density shaking cultures. Protein Expression Purif. 41, 207-234
23. Bradford, M. M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254
24. Murphy, J. H. and Trapane, T. L. (1996) Concentration and extinction coefficient determination for oligonucleotides and analogs using a general phosphate analysis. Anal. Biochem. 240, 273-282
25. Buczek, P. and Horvath, M. P. (2006) Thermodynamic characterization of binding Oxytricha nova single strand telomere DNA with the α protein N-terminal domain. J. Mol. Biol. 359, 1217-1234
26. Kuzmic, P. (1996) Program DYNAFIT for the analysis of enzyme kinetic data: application to HIV proteinase. Anal. Biochem. 237, 260-273
27. Olmsted, M. C., Bond, J. P., Anderson, C. F. and Record, Jr, M. T. (1995) Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers. Biophys. J. 68, 634-647
28. Record, Jr, M. T., Zhang, W. and Anderson, C. F. (1998) Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. Adv. Protein Chem. 51, 281-353
29. Dragan, A. I., Liu, Y., Makeyeva, E. N. and Privalov, P. L. (2004) DNA-binding domain of GCN4 induces bending of both the ATF/CREB and AP-1 binding sites of DNA. Nucleic Acids Res. 32, 5192-5197
30. Bianchi, A., Smith, S., Chong, L., Elias, P. and de Lange, T. (1997) TRF1 is a dimer and bends telomeric DNA. EMBO J. 16, 1785-1794
31. Fairall, L., Chapman, L., Moss, H., de Lange, T. and Rhodes, D. (2001) Structure of the TRFH dimerization domain of the human telomeric proteins TRF1 and TRF2. Mol. Cell 8, 351-361
32. Khan, S. J., Yanez, G., Seldeen, K., Wang, H., Lindsay, S. M. and Fletcher, T. M. (2007) Interactions of TRF2 with model telomeric ends. Biochem. Biophys. Res. Commun. 363, 44-50
33. Hanaoka, S., Nagadoi, A. and Nishimura, Y. (2005) Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities. Protein Sci. 14, 119-130
34. Revzin, A. (1990) The Biology of Nonspecific DNA-Protein Interactions, CRC Press, Boca Raton
35. von Hippel, P. H. (2007) From "simple" DNA-protein interactions to the macromolecular machines of gene expression. Annu. Rev. Biophys. Biomol. Struct. 36, 79-105
36. Regad, F., Lebas, M. and Lescure, B. (1994) Interstitial telomeric repeats within the Arabidopsis thaliana genome. J. Mol. Biol. 239, 163-169
37. Fajkus, J. and Trifonov, E. N. (2001) Columnar packing of telomeric nucleosomes. Biochem. Biophys. Res. Commun. 280, 961-963