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Volumn 83, Issue 6, 2009, Pages 2697-2707

Widely conserved recombination patterns among single-stranded DNA viruses

Author keywords

[No Author keywords available]

Indexed keywords

RECOMBINANT PROTEIN; SINGLE STRANDED DNA; VIRUS DNA;

EID: 62749122244     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.02152-08     Document Type: Article
Times cited : (206)

References (85)
  • 1
    • 11344269150 scopus 로고    scopus 로고
    • Replicative intermediates of tomato leaf curl virus and its satellite DNAs
    • Alberter, B., M. Ali Rezaian, and H. Jeske. 2005. Replicative intermediates of tomato leaf curl virus and its satellite DNAs. Virology 331:441-448.
    • (2005) Virology , vol.331 , pp. 441-448
    • Alberter, B.1    Ali Rezaian, M.2    Jeske, H.3
  • 2
  • 4
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni, M. F., D. Posada, and M. W. Feldman. 2007. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176: 1035-1047.
    • (2007) Genetics , vol.176 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 5
    • 12344296268 scopus 로고    scopus 로고
    • Role of recombination in the evolution of natural populations of cucumber mosaic virus, a tripartite RNA plant virus
    • Bonnet, J., A. Fraile, S. Sacristan, J. M. Malpica, and F. Garcia-Arenal. 2005. Role of recombination in the evolution of natural populations of cucumber mosaic virus, a tripartite RNA plant virus. Virology 332:359-368.
    • (2005) Virology , vol.332 , pp. 359-368
    • Bonnet, J.1    Fraile, A.2    Sacristan, S.3    Malpica, J.M.4    Garcia-Arenal, F.5
  • 6
    • 43349104030 scopus 로고    scopus 로고
    • Recommendations for the classification and nomenclature of the DNA-beta satellites of begomoviruses
    • Briddon, R. W., J. K. Brown, E. Moriones, J. Stanley, M. Zerbini, X. Zhou, and C. M. Fauquet. 2008. Recommendations for the classification and nomenclature of the DNA-beta satellites of begomoviruses. Arch. Virol. 153: 763.
    • (2008) Arch. Virol , vol.153 , pp. 763
    • Briddon, R.W.1    Brown, J.K.2    Moriones, E.3    Stanley, J.4    Zerbini, M.5    Zhou, X.6    Fauquet, C.M.7
  • 7
    • 34548858708 scopus 로고    scopus 로고
    • Engineering by homologous recombination: Exploring sequence and function within a conserved fold
    • Carbone, M. N., and F. H. Arnold. 2007. Engineering by homologous recombination: exploring sequence and function within a conserved fold. Curr. Opin. Struct. Biol. 17:454-459.
    • (2007) Curr. Opin. Struct. Biol , vol.17 , pp. 454-459
    • Carbone, M.N.1    Arnold, F.H.2
  • 8
    • 33645972304 scopus 로고    scopus 로고
    • A phylogenetic survey of recombination frequency in plant RNA viruses
    • Chare, E. R., and E. C. Holmes. 2006. A phylogenetic survey of recombination frequency in plant RNA viruses. Arch. Virol. 151:933-946.
    • (2006) Arch. Virol , vol.151 , pp. 933-946
    • Chare, E.R.1    Holmes, E.C.2
  • 9
    • 4143061440 scopus 로고    scopus 로고
    • Palindrome regeneration by template strand-switching mechanism at the origin of DNA replication of porcine circovirus via the rolling-circle melting-pot replication model
    • Cheung, A. K. 2004. Palindrome regeneration by template strand-switching mechanism at the origin of DNA replication of porcine circovirus via the rolling-circle melting-pot replication model. J. Virol. 78:9016-9029.
    • (2004) J. Virol , vol.78 , pp. 9016-9029
    • Cheung, A.K.1
  • 10
    • 0035695023 scopus 로고    scopus 로고
    • Recombination at double-strand breaks and DNA ends: Conserved mechanisms from phage to humans
    • Cromie, G. A., J. C. Connelly, and D. R. Leach. 2001. Recombination at double-strand breaks and DNA ends: conserved mechanisms from phage to humans. Mol. Cell 8:1163-1174.
    • (2001) Mol. Cell , vol.8 , pp. 1163-1174
    • Cromie, G.A.1    Connelly, J.C.2    Leach, D.R.3
  • 11
    • 33645877066 scopus 로고    scopus 로고
    • Genetic characterization of type 2 porcine circoviruses detected in Hungarian wild boars
    • Csagola, A., S. Kecskemeti, G. Kardos, I. Kiss, and T. Tuboly. 2006. Genetic characterization of type 2 porcine circoviruses detected in Hungarian wild boars. Arch. Virol. 151:495-507.
    • (2006) Arch. Virol , vol.151 , pp. 495-507
    • Csagola, A.1    Kecskemeti, S.2    Kardos, G.3    Kiss, I.4    Tuboly, T.5
  • 13
    • 49149083710 scopus 로고    scopus 로고
    • Replication properties of clade A/C chimeric feline immunodeficiency viruses and evaluation of infection kinetics in the domestic cat
    • de Rozieres, S., J. Thompson, M. Sundstrom, J. Gruber, D. S. Stump, A. P. de Parseval, S. VandeWoude, and J. H. Elder. 2008. Replication properties of clade A/C chimeric feline immunodeficiency viruses and evaluation of infection kinetics in the domestic cat. J. Virol. 82:7953-7963.
    • (2008) J. Virol , vol.82 , pp. 7953-7963
    • de Rozieres, S.1    Thompson, J.2    Sundstrom, M.3    Gruber, J.4    Stump, D.S.5    de Parseval, A.P.6    VandeWoude, S.7    Elder, J.H.8
  • 15
    • 40849097775 scopus 로고    scopus 로고
    • Rates of evolutionary change in viruses: Patterns and determinants
    • Duffy, S., L. A. Shackelton, and E. C. Holmes. 2008. Rates of evolutionary change in viruses: patterns and determinants. Nat. Rev. Genet. 9:267-276.
    • (2008) Nat. Rev. Genet , vol.9 , pp. 267-276
    • Duffy, S.1    Shackelton, L.A.2    Holmes, E.C.3
  • 16
    • 33846507059 scopus 로고    scopus 로고
    • Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus
    • Escriu, F., A. Fraile, and F. Garcia-Arenal. 2007. Constraints to genetic exchange support gene coadaptation in a tripartite RNA virus. PLoS Pathog. 3:e8.
    • (2007) PLoS Pathog , vol.3
    • Escriu, F.1    Fraile, A.2    Garcia-Arenal, F.3
  • 17
    • 35448977189 scopus 로고    scopus 로고
    • The distribution of HIV-1 recombination breakpoints
    • Fan, J., M. Negroni, and D. L. Robertson. 2007. The distribution of HIV-1 recombination breakpoints. Infect. Genet. Evol. 7:717-723.
    • (2007) Infect. Genet. Evol , vol.7 , pp. 717-723
    • Fan, J.1    Negroni, M.2    Robertson, D.L.3
  • 18
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • Felsenstein, J. 1974. The evolutionary advantage of recombination. Genetics 78:737-756.
    • (1974) Genetics , vol.78 , pp. 737-756
    • Felsenstein, J.1
  • 20
    • 34250175133 scopus 로고    scopus 로고
    • Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses
    • Garcia-Andres, S., D. M. Tomas, S. Sanchez-Campos, J. Navas-Castillo, and E. Moriones. 2007. Frequent occurrence of recombinants in mixed infections of tomato yellow leaf curl disease-associated begomoviruses. Virology 365: 210-219.
    • (2007) Virology , vol.365 , pp. 210-219
    • Garcia-Andres, S.1    Tomas, D.M.2    Sanchez-Campos, S.3    Navas-Castillo, J.4    Moriones, E.5
  • 21
    • 0033753825 scopus 로고    scopus 로고
    • Sister-Scanning: A Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs, M. J., J. S. Armstrong, and A. J. Gibbs. 2000. Sister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16:573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 22
    • 0033529321 scopus 로고    scopus 로고
    • Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus
    • Gibbs, M. J., and G. F. Weiller. 1999. Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc. Natl. Acad. Sci. USA 96:8022-8027.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8022-8027
    • Gibbs, M.J.1    Weiller, G.F.2
  • 23
    • 1642452600 scopus 로고    scopus 로고
    • Nanoviruses: Genome organisation and protein function
    • Gronenborn, B. 2004. Nanoviruses: genome organisation and protein function. Vet. Microbiol. 98:103-109.
    • (2004) Vet. Microbiol , vol.98 , pp. 103-109
    • Gronenborn, B.1
  • 24
    • 0033569633 scopus 로고    scopus 로고
    • Geminivirus DNA replication
    • Gutierrez, C. 1999. Geminivirus DNA replication. Cell. Mol. Life Sci. 56: 313-329.
    • (1999) Cell. Mol. Life Sci , vol.56 , pp. 313-329
    • Gutierrez, C.1
  • 25
    • 0017710883 scopus 로고
    • Origin and termination of adeno-associated virus DNA replication
    • Hauswirth, W. W., and K. I. Berns. 1977. Origin and termination of adeno-associated virus DNA replication. Virology 78:488-499.
    • (1977) Virology , vol.78 , pp. 488-499
    • Hauswirth, W.W.1    Berns, K.I.2
  • 27
    • 33751253784 scopus 로고    scopus 로고
    • Recombination patterns in aphthoviruses mirror those found in other picornaviruses
    • Heath, L., E. van der Walt, A. Varsani, and D. P. Martin. 2006. Recombination patterns in aphthoviruses mirror those found in other picornaviruses. J. Virol. 80:11827-11832.
    • (2006) J. Virol , vol.80 , pp. 11827-11832
    • Heath, L.1    van der Walt, E.2    Varsani, A.3    Martin, D.P.4
  • 28
    • 0027443475 scopus 로고
    • The conserved nonanucleotide motif of the geminivirus stem-loop sequence promotes replicational release of virus molecules from redundant copies
    • Heyraud, F., V. Matzeit, S. Schaefer, J. Schell, and B. Gronenborn. 1993. The conserved nonanucleotide motif of the geminivirus stem-loop sequence promotes replicational release of virus molecules from redundant copies. Biochimie 75:605-615.
    • (1993) Biochimie , vol.75 , pp. 605-615
    • Heyraud, F.1    Matzeit, V.2    Schaefer, S.3    Schell, J.4    Gronenborn, B.5
  • 29
    • 0033021298 scopus 로고    scopus 로고
    • Phylogenetic evidence for recombination in dengue virus
    • Holmes, E. C., M. Worobey, and A. Rambaut. 1999. Phylogenetic evidence for recombination in dengue virus. Mol. Biol. Evol. 16:405-409.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 405-409
    • Holmes, E.C.1    Worobey, M.2    Rambaut, A.3
  • 30
    • 0842331107 scopus 로고    scopus 로고
    • Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses
    • Hughes, A. L. 2004. Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses. Mol. Phylogenet. Evol. 30:287-294.
    • (2004) Mol. Phylogenet. Evol , vol.30 , pp. 287-294
    • Hughes, A.L.1
  • 31
    • 0026748738 scopus 로고
    • Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
    • Ilyina, T. V., and E. V. Koonin. 1992. Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res. 20:3279-3285.
    • (1992) Nucleic Acids Res , vol.20 , pp. 3279-3285
    • Ilyina, T.V.1    Koonin, E.V.2
  • 32
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Jain, R., M. C. Rivera, and J. A. Lake. 1999. Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. USA 96:3801-3806.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 33
    • 0035503315 scopus 로고    scopus 로고
    • DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus
    • Jeske, H., M. Lutgemeier, and W. Preiss. 2001. DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus. EMBO J. 20:6158-6167.
    • (2001) EMBO J , vol.20 , pp. 6158-6167
    • Jeske, H.1    Lutgemeier, M.2    Preiss, W.3
  • 34
    • 0026047555 scopus 로고
    • DNA replication of wheat dwarf virus, a geminivirus, requires two cis-acting signals
    • Kammann, M., H. J. Schalk, V. Matzeit, S. Schaefer, J. Schell, and B. Gronenborn. 1991. DNA replication of wheat dwarf virus, a geminivirus, requires two cis-acting signals. Virology 184:786-790.
    • (1991) Virology , vol.184 , pp. 786-790
    • Kammann, M.1    Schalk, H.J.2    Matzeit, V.3    Schaefer, S.4    Schell, J.5    Gronenborn, B.6
  • 35
    • 33748428600 scopus 로고    scopus 로고
    • Interference among deleterious mutations favours sex and recombination in finite populations
    • Keightley, P. D., and S. P. Otto. 2006. Interference among deleterious mutations favours sex and recombination in finite populations. Nature 443:89-92.
    • (2006) Nature , vol.443 , pp. 89-92
    • Keightley, P.D.1    Otto, S.P.2
  • 36
    • 0026333509 scopus 로고
    • Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity
    • Koonin, E. V., A. R. Mushegian, E. V. Ryabov, and V. V. Dolja. 1991. Diverse groups of plant RNA and DNA viruses share related movement proteins that may possess chaperone-like activity. J. Gen. Virol. 72:2895-2903.
    • (1991) J. Gen. Virol , vol.72 , pp. 2895-2903
    • Koonin, E.V.1    Mushegian, A.R.2    Ryabov, E.V.3    Dolja, V.V.4
  • 37
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • Lee, C., C. Grasso, and M. F. Sharlow. 2002. Multiple sequence alignment using partial order graphs. Bioinformatics 18:452-464.
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.F.3
  • 38
    • 37349086780 scopus 로고    scopus 로고
    • Avoidance of protein fold disruption in natural virus recombinants
    • Lefeuvre, P., J. M. Lett, B. Reynaud, and D. P. Martin. 2007. Avoidance of protein fold disruption in natural virus recombinants. PLoS Pathog. 3:el81.
    • (2007) PLoS Pathog , vol.3
    • Lefeuvre, P.1    Lett, J.M.2    Reynaud, B.3    Martin, D.P.4
  • 41
    • 41649116518 scopus 로고    scopus 로고
    • Evidence of frequent recombination among human adenoviruses
    • Lukashev, A. N., O. E. Ivanova, T. P. Eremeeva, and R. D. Iggo. 2008. Evidence of frequent recombination among human adenoviruses. J. Gen. Virol. 89:380-388.
    • (2008) J. Gen. Virol , vol.89 , pp. 380-388
    • Lukashev, A.N.1    Ivanova, O.E.2    Eremeeva, T.P.3    Iggo, R.D.4
  • 42
    • 28044464255 scopus 로고    scopus 로고
    • Recombination in circulating human en-terovirus B: Independent evolution of structural and non-structural genome regions
    • Lukashev, A. N., V. A. Lashkevich, O. E. Ivanova, G. A. Koroleva, A. E. Hinkkanen, and J. Ilonen. 2005. Recombination in circulating human en-terovirus B: independent evolution of structural and non-structural genome regions. J. Gen. Virol. 86:3281-3290.
    • (2005) J. Gen. Virol , vol.86 , pp. 3281-3290
    • Lukashev, A.N.1    Lashkevich, V.A.2    Ivanova, O.E.3    Koroleva, G.A.4    Hinkkanen, A.E.5    Ilonen, J.6
  • 43
    • 0035123879 scopus 로고    scopus 로고
    • Evolutionary relationships among parvoviruses: Virus-host coevolution among autonomous primate parvovi-ruses and links between adeno-associated and avian parvoviruses
    • Lukashov, V. V., and J. Goudsmit. 2001. Evolutionary relationships among parvoviruses: virus-host coevolution among autonomous primate parvovi-ruses and links between adeno-associated and avian parvoviruses. J. Virol. 75:2729-2740.
    • (2001) J. Virol , vol.75 , pp. 2729-2740
    • Lukashov, V.V.1    Goudsmit, J.2
  • 45
    • 0031964179 scopus 로고    scopus 로고
    • Identification of a protein essential for replication of porcine circovirus
    • Mankertz, A., J. Mankertz, K. Wolf, and H. J. Buhk. 1998. Identification of a protein essential for replication of porcine circovirus. J. Gen. Virol. 79: 381-384.
    • (1998) J. Gen. Virol , vol.79 , pp. 381-384
    • Mankertz, A.1    Mankertz, J.2    Wolf, K.3    Buhk, H.J.4
  • 47
  • 48
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • Martin, D., and E. Rybicki. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 49
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin, D. P., D. Posada, K. A. Crandall, and C. Williamson. 2005. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retrovir. 21: 98-102.
    • (2005) AIDS Res. Hum. Retrovir , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 50
    • 0036392284 scopus 로고    scopus 로고
    • Investigation of maize streak virus pathogenicity determinants using chimaeric genomes
    • Martin, D. P., and E. P. Rybicki. 2002. Investigation of maize streak virus pathogenicity determinants using chimaeric genomes. Virology 300:180-188.
    • (2002) Virology , vol.300 , pp. 180-188
    • Martin, D.P.1    Rybicki, E.P.2
  • 51
    • 33747626399 scopus 로고    scopus 로고
    • The evolutionary value of recombination is constrained by genome modularity
    • Martin, D. P., E. van der Walt, D. Posada, and E. P. Rybicki. 2005. The evolutionary value of recombination is constrained by genome modularity. PLoS Genet. 1:e51.
    • (2005) PLoS Genet , vol.1
    • Martin, D.P.1    van der Walt, E.2    Posada, D.3    Rybicki, E.P.4
  • 52
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: Recombination detection and analysis from sequence alignments
    • Martin, D. P., C. Williamson, and D. Posada. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21:260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 53
    • 33644746236 scopus 로고    scopus 로고
    • Selection for recombination in structured populations
    • Martin, G., S. P. Otto, and T. Lenormand. 2006. Selection for recombination in structured populations. Genetics 172:593-609.
    • (2006) Genetics , vol.172 , pp. 593-609
    • Martin, G.1    Otto, S.P.2    Lenormand, T.3
  • 54
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Maynard, S. J. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol , vol.34 , pp. 126-129
    • Maynard, S.J.1
  • 55
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean, G., P. Awadalla, and P. Fearnhead. 2002. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160:1231-1241.
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 56
    • 2142773942 scopus 로고    scopus 로고
    • The fine-scale structure of recombination rate variation in the human genome
    • McVean, G. A., S. R. Myers, S. Hunt, P. Deloukas, D. R. Bentley, and P. Donnelly. 2004. The fine-scale structure of recombination rate variation in the human genome. Science 304:581-584.
    • (2004) Science , vol.304 , pp. 581-584
    • McVean, G.A.1    Myers, S.R.2    Hunt, S.3    Deloukas, P.4    Bentley, D.R.5    Donnelly, P.6
  • 58
    • 0036938933 scopus 로고    scopus 로고
    • A natural recombinant between the geminiviruses tomato yellow leaf curl Sardinia virus and tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations
    • Monci, F., S. Sanchez-Campos, J. Navas-Castillo, and E. Moriones. 2002. A natural recombinant between the geminiviruses tomato yellow leaf curl Sardinia virus and tomato yellow leaf curl virus exhibits a novel pathogenic phenotype and is becoming prevalent in Spanish populations. Virology 303:317-326.
    • (2002) Virology , vol.303 , pp. 317-326
    • Monci, F.1    Sanchez-Campos, S.2    Navas-Castillo, J.3    Moriones, E.4
  • 59
    • 0031739965 scopus 로고    scopus 로고
    • Contrasting lifestyles of rolling-circle phages and plas-mids
    • Novick, R. P. 1998. Contrasting lifestyles of rolling-circle phages and plas-mids. Trends Biochem. Sci. 23:434-438.
    • (1998) Trends Biochem. Sci , vol.23 , pp. 434-438
    • Novick, R.P.1
  • 60
    • 33751514317 scopus 로고    scopus 로고
    • Molecular evolution of porcine circovirus type 2 genomes: Phylogeny and clonality
    • Olvera, A., M. Cortey, and J. Segales. 2007. Molecular evolution of porcine circovirus type 2 genomes: phylogeny and clonality. Virology 357:175-185.
    • (2007) Virology , vol.357 , pp. 175-185
    • Olvera, A.1    Cortey, M.2    Segales, J.3
  • 61
    • 36248958745 scopus 로고    scopus 로고
    • Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant
    • Owor, B. E., D. P. Martin, D. N. Shepherd, R. Edema, A. L. Monjane, E. P. Rybicki, J. A. Thomson, and A. Varsani. 2007. Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant. J. Gen. Virol. 88:3154-3165.
    • (2007) J. Gen. Virol , vol.88 , pp. 3154-3165
    • Owor, B.E.1    Martin, D.P.2    Shepherd, D.N.3    Edema, R.4    Monjane, A.L.5    Rybicki, E.P.6    Thomson, J.A.7    Varsani, A.8
  • 62
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam, M., S. Sawyer, and C. M. Fauquet. 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 63
    • 35048903026 scopus 로고    scopus 로고
    • Biological properties and relative fitness of inter-subgroup cucumber mosaic virus RNA 3 recombinants produced in vitro
    • Pierrugues, O., L. Guilbaud, I. Fernandez-Delmond, F. Fabre, M. Tepfer, and M. Jacquemond. 2007. Biological properties and relative fitness of inter-subgroup cucumber mosaic virus RNA 3 recombinants produced in vitro. J. Gen. Virol. 88:2852-2861.
    • (2007) J. Gen. Virol , vol.88 , pp. 2852-2861
    • Pierrugues, O.1    Guilbaud, L.2    Fernandez-Delmond, I.3    Fabre, F.4    Tepfer, M.5    Jacquemond, M.6
  • 64
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada, D., and K. A. Crandall. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98:13757-13762.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 65
    • 0037370613 scopus 로고    scopus 로고
    • Multitasking in replication is common among geminiviruses
    • Preiss, W., and H. Jeske. 2003. Multitasking in replication is common among geminiviruses. J. Virol. 77:2972-2980.
    • (2003) J. Virol , vol.77 , pp. 2972-2980
    • Preiss, W.1    Jeske, H.2
  • 66
    • 31344453994 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of microvirid coliphage genomes
    • Rokyta, D. R., C. L. Burch, S. B. Caudle, and H. A. Wichman. 2006. Horizontal gene transfer and the evolution of microvirid coliphage genomes. J. Bacteriol. 188:1134-1142.
    • (2006) J. Bacteriol , vol.188 , pp. 1134-1142
    • Rokyta, D.R.1    Burch, C.L.2    Caudle, S.B.3    Wichman, H.A.4
  • 67
    • 0025847721 scopus 로고
    • DNA forms of the geminivirus African cassava mosaic virus consistent with a rolling circle mechanism of replication
    • Saunders, K., A. Lucy, and J. Stanley. 1991. DNA forms of the geminivirus African cassava mosaic virus consistent with a rolling circle mechanism of replication. Nucleic Acids Res. 19:2325-2330.
    • (1991) Nucleic Acids Res , vol.19 , pp. 2325-2330
    • Saunders, K.1    Lucy, A.2    Stanley, J.3
  • 68
    • 0033544336 scopus 로고    scopus 로고
    • A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: Evidence for interfamilial recombination between plant DNA viruses
    • Saunders, K., and J. Stanley. 1999. A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for interfamilial recombination between plant DNA viruses. Virology 264:142-152.
    • (1999) Virology , vol.264 , pp. 142-152
    • Saunders, K.1    Stanley, J.2
  • 70
    • 36749025635 scopus 로고    scopus 로고
    • Shackelton, L. A. K. Hoelzer, C. R. Parrish, and E. C. Holmes. 2007. Comparative analysis reveals frequent recombination in the parvoviruses. J. Gen. Virol. 88:3294-3301.
    • Shackelton, L. A. K. Hoelzer, C. R. Parrish, and E. C. Holmes. 2007. Comparative analysis reveals frequent recombination in the parvoviruses. J. Gen. Virol. 88:3294-3301.
  • 71
    • 12244297403 scopus 로고    scopus 로고
    • High rate of viral evolution associated with the emergence of carnivore parvovirus
    • Shackelton, L. A., C. R. Parrish, U. Truyen, and E. C. Holmes. 2005. High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc. Natl. Acad. Sci. USA 102:379-384.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 379-384
    • Shackelton, L.A.1    Parrish, C.R.2    Truyen, U.3    Holmes, E.C.4
  • 72
    • 33750742813 scopus 로고    scopus 로고
    • Recombination and selection in the evolution of picor-naviruses and other mammalian positive-stranded RNA viruses
    • Simmonds, P. 2006. Recombination and selection in the evolution of picor-naviruses and other mammalian positive-stranded RNA viruses. J. Virol. 80:11124-11140.
    • (2006) J. Virol , vol.80 , pp. 11124-11140
    • Simmonds, P.1
  • 73
    • 0028894260 scopus 로고
    • Analysis of African cassava mosaic virus recombinants suggests strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication
    • Stanley, J. 1995. Analysis of African cassava mosaic virus recombinants suggests strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication. Virology 206:707-712.
    • (1995) Virology , vol.206 , pp. 707-712
    • Stanley, J.1
  • 74
    • 0025827364 scopus 로고
    • Replicational release of geminivirus genomes from tandemly repeated copies: Evidence for rolling-circle replication of a plant viral DNA
    • Stenger, D. C., G. N. Revington, M. C. Stevenson, and D. M. Bisaro. 1991. Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proc. Natl. Acad. Sci. USA 88:8029-8033.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8029-8033
    • Stenger, D.C.1    Revington, G.N.2    Stevenson, M.C.3    Bisaro, D.M.4
  • 75
    • 34547781750 scopus 로고    scopus 로고
    • Tamura, K, J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599
    • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
  • 76
    • 0017167291 scopus 로고
    • Rolling hairpin model for replication of parvovirus and linear chromosomal DNA
    • Tattersall, P., and D. C. Ward. 1976. Rolling hairpin model for replication of parvovirus and linear chromosomal DNA. Nature 263:106-109.
    • (1976) Nature , vol.263 , pp. 106-109
    • Tattersall, P.1    Ward, D.C.2
  • 77
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 78
    • 0029802651 scopus 로고    scopus 로고
    • Investigation of the transfection capability of cloned tandemly-repeated chicken anaemia virus DNA fragments
    • Todd, D., J. L. Creelan, B. M. Meehan, and M. S. McNulty. 1996. Investigation of the transfection capability of cloned tandemly-repeated chicken anaemia virus DNA fragments. Arch. Virol. 141:1523-1534.
    • (1996) Arch. Virol , vol.141 , pp. 1523-1534
    • Todd, D.1    Creelan, J.L.2    Meehan, B.M.3    McNulty, M.S.4
  • 79
    • 0019457162 scopus 로고
    • Enzymatic properties of the bacteriophage phi X174 A protein on superhelical phi X174 DNA: A model for the termination of the rolling circle DNA replication
    • van der Ende, A., S. A. Langeveld, R. Teertstra, G. A. van Arkel, and P. J. Weisbeek. 1981. Enzymatic properties of the bacteriophage phi X174 A protein on superhelical phi X174 DNA: a model for the termination of the rolling circle DNA replication. Nucleic Acids Res. 9:2037-2053.
    • (1981) Nucleic Acids Res , vol.9 , pp. 2037-2053
    • van der Ende, A.1    Langeveld, S.A.2    Teertstra, R.3    van Arkel, G.A.4    Weisbeek, P.J.5
  • 80
    • 45249113964 scopus 로고    scopus 로고
    • van der Walt, E., K. E. Palmer, D. P. Martin, and E. P. Rybicki. 2008. Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions. Virol. J. 5:61.
    • van der Walt, E., K. E. Palmer, D. P. Martin, and E. P. Rybicki. 2008. Viable chimaeric viruses confirm the biological importance of sequence specific maize streak virus movement protein and coat protein interactions. Virol. J. 5:61.
  • 84
    • 0030862753 scopus 로고    scopus 로고
    • Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination
    • Zhou, X., Y. Liu, L. Calvert, C. Munoz, G. W. Otim-Nape, D. J. Robinson, and B. D. Harrison. 1997. Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. J. Gen. Virol. 78:2101-2111.
    • (1997) J. Gen. Virol , vol.78 , pp. 2101-2111
    • Zhou, X.1    Liu, Y.2    Calvert, L.3    Munoz, C.4    Otim-Nape, G.W.5    Robinson, D.J.6    Harrison, B.D.7
  • 85
    • 34548539539 scopus 로고    scopus 로고
    • Bayesian estimates of the evolutionary rate and age of hepatitis B virus
    • Zhou, Y., and E. C. Holmes. 2007. Bayesian estimates of the evolutionary rate and age of hepatitis B virus. J. Mol. Evol. 65:197-205.
    • (2007) J. Mol. Evol , vol.65 , pp. 197-205
    • Zhou, Y.1    Holmes, E.C.2


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