Palindrome regeneration by template strand-switching mechanism at the origin of DNA replication of porcine circovirus via the rolling-circle melting-pot replication model

Journal of Virology

Volumn 78, Issue 17, 2004, Pages 9016-9029

  Cheung, Andrew K ^a  

^a NATIONAL ANIMAL DISEASE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA; CRUCIFORM DNA; PALINDROMIC DNA; SINGLE STRANDED DNA;

ARTICLE; CIRCOVIRIDAE; DNA FLANKING REGION; DNA RECOMBINATION; DNA REPLICATION; DNA REPLICATION INITIATION; DNA REPLICATION ORIGIN; DNA REPLICATION TERMINATION; DNA STRAND; DNA STRUCTURE; DNA SYNTHESIS; DNA TEMPLATE; DNA TEMPLATE STRAND SWITCHING; DNA TERTIARY STRUCTURE; EUKARYOTE EVOLUTION; INVERTED REPEAT; MODEL; MUTANT; NONHUMAN; PRIORITY JOURNAL; PROKARYOTE; ROLLING CIRCLE MELTING POT MODEL; VIRUS GENOME;

ANIMALS; BASE PAIRING; BASE SEQUENCE; CIRCOVIRUS; DNA REPLICATION; DNA, VIRAL; GENOME, VIRAL; GENOTYPE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; REPLICATION ORIGIN; SEQUENCE DELETION; SWINE; TEMPLATES, GENETIC; VIRAL PROTEINS; VIRUS REPLICATION;

EID: 4143061440     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.17.9016-9029.2004     Document Type: Article

References (40)

1. Allan, G. M., and J. A. Ellis. 2000. Porcine circoviruses; a review. J. Vet. Diagn. Investig. 12:3-14.
2. Cheung, A. K. 2003. Comparative analysis of the transcriptional patterns of pathogenic and non-pathogenic circoviruses. Virology 301:41-49.
3. Cheung, A. K. 2004. Identification of the essential and non-essential transcriptional units for protein synthesis, DNA replication and infectious virus production of porcine circovirus type 1. Arch. Virol. 149:975-988.
4. Cheung, A. K. 2004. Detection of template strand-switching during initiation and termination of DNA replication of porcine circovirus. J. Virol. 78:4268-4277.
5. Cheung, A. K. Identification of an octanucleotide motif sequence essential for viral protein, DNA and progeny virus biosynthesis at the origin of DNA replication of porcine circovirus type 2. Virology, 324:28-36.
6. Cheung, A. K., and S. R. Bolin. 2002. Kinetics of porcine circovirus type 2 replication. Arch. Virol. 147:43-58.
7. del Solar, G., R. M. Giraldo, J. Ruiz-Echevarria, M. Espinosa, and R. Diaz-Orejas. 1998. Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev. 62:434-464.
8. Fenaux, M., P. G. Halbur, M. Gill, T. E. Toth, and X. J. Meng. 2000. Genetic characterization of type 2 porcine circovirus (PCV-2) from pigs with postweaning multisystemic wasting syndrome in different geographic regions of North America and development of a differential PCR-restriction fragment length polymorphism assay to detect and differentiate between infections with PCV-1 and PCV-2. J. Clin. Microbiol. 38:2494-2503.
9. Gibbs, M. J., and G. F. Weiller. 1999. Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc. Natl. Acad. Sci. USA 96:8022-8027.
10. Graham, F. L., J. Rudy, and P. Brinkley. 1989. Infectious circular DNA of human adenovirus type 5: regeneration of viral DNA termini from molecules lacking terminal sequences. EMBO J. 7:2077-2085.
11. Gutierrez, C. 1999. Geminivirus DNA replication. Cell. Mol. Life Sci. 56:313-329.
12. Hamel, A. L., L. L. Lin, and G. P. S. Nayar. 1998. Nucleotide sequence of porcine circovirus associated with postweaning multisystemic wasting syndrome in pigs. J. Virol. 72:5262-5267.
13. Hanley-Bowdoin, L., S. B. Settlage, B. M. Orozco, S. Nagar, and D. Robertson. 2000. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation Crit. Rev. Biochem. Mol. Biol. 35:105-140.
14. Kammann, M., H. J. Schalk, V. Malzeit, S. Schaefer, J. Schell, and B. Gronenborn. 1991. DNA replication of wheat dwarf virus, a geminivirus, requires two cis-acting signals. Virology 184:786-790.
15. Khan, S. A. 2000. Plasmid rolling-circle replication: recent developments. Mol. Microbiol. 37:477-484.
16. Lazarowitz, S. G., A. J. Finder, V. D. Damsteegt, and J. S. Rogers. 1989. Maize streak virus genes essential for systemic and symptom development. EMBO J. 8:1023-1032.
17. Lefebvre, R. B., S. Riva, and K. I. Berns. 1984. Conformation takes precedence over sequence in adeno-associated virus DNA replication. Mol. Cell. Biol. 4:1416-1419.
18. Mankertz, A., and B. Hillenbrand. 2001. Replication of porcine circovirus type 1 requires two proteins encoded by the viral rep gene. Virology 279:429-138.
19. Mankertz, A., J. Mankertz, K. Wolf, and H.-J. Buhk. 1998. Identification of a protein essential for replication of porcine circovirus. J. Gen. Virol. 79:381-384.
20. Mankertz, A., F. Persson, J. Mankertz, G. BLaess, and H.-J. Buhk. 1997. Mapping and characterization of the origin of DNA replication of porcine circovirus. J. Virol. 71:2562-2566.
21. McNulty, M., J. Dale, P. Lukert, A. Mankertz, J. Randles, and D. Todd. 2000. Circoviridae, p. 299-303. In M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner (ed.), Seventh report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, Calif.
22. Meehan, B. M., J. L. Creelan, M. S. McNulty, and D. Todd, 1997. Sequence of porcine circovirus DNA: affinities with plant circoviruses. J. Gen. Virol. 78:221-227.
23. Meehan, B. M., F. McNeilly, D. Todd, S. Kennedy, A. Jewhurst, J. A. Ellis, L. E. Hassard, E. G. Clark, D. M. Haines, and G. M. Allan. 1998. Characterization of novel circovirus DNAs associated with wasting syndromes in pigs. J. Gen. Virol. 79:2171-2179.
24. Miao, D. M., Y. Honda, K. Tanaka, A. Higashi, T. Nakamura, Y. Taguchi, H. Sakai, T. Komano, and M. Bagdasarian. 1993. A base-paired hairpin structure essential for the functional priming signal for DNA replication of the broad host range plasmid RSF1010. Nucleic Acids Res. 21:4900-4903.
25. Michel, B., and S. D. Ehrlich. 1986. Illegitimate recombination at the replication origin of bacteriophage M13. Proc. Natl. Acad. Sci. USA 83:3386-3390.
26. Michel, B., and S. D. Ehrlich. 1986. Illegitimate recombination occurs between the replication origin of the plasmid pC194 and a progressing replication fork. EMBO J. 5:3691-3696.
27. Morozov, I., T. Sirinarumitr, S. Sorden, P. G. Halbur, M. K. Morgan, K.-J. Yoon, and P. S. Paul. 1998. Detection of a novel strain of porcine circovirus in pigs with postweaning multisystemic wasting syndrome. J. Clin. Microbiol. 36:2535-2541.
28. Musatov, S., J. Roberts, D. Pfaff, and M. Kaplitt. 2002. A cis-acting element that directs circular adeno-associated virus replication and packaging. J. Virol. 76:12792-12802.
29. Musatov, S. A., T. A. Scully, L. Dudus, and K. J. Fisher. 2000. Induction of circular episomes during rescue and replication of adeno-associated virus in experimental models of virus latency. Virology 275:411-432.
30. Niagro, F. D., A. N. Forsthoefel, R. P. Lawther, L. Kamalanathan, B. W. Ritchie, K. S. Latimer, and P. D. Lukert. 1998. Beak and feather disease and plant circoviruses. Arch. Virol. 143:1723-1744.
31. Noirot, P., J. Bargonetti, and R. P. Novick. 1990. Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the origin. Proc. Natl. Acad. Sci. USA 87:8560-8564.
32. Novick, R. P. 1998. Contrasting lifestyles of rolling-circle phages and plasmids. Trends Biochem. Sci. 23:434-438.
33. Orozco, B. M., and L. Hanley-Bowdoin. 1996. A DNA structure is required for geminivirus replication origin function. J. Virol. 70:148-158.
34. Palmer, K. E., and E. O. Rybicki. 1998. The molecular biology of mastreviruses. Adv. Virus Res. 50:183-234.
35. Pringle, C. R. 1999. Virus taxonomy at the XIth International Congress of Virology, Sydney, Australia. Arch. Virol. 144:2065-2070.
36. Randles, J. W., P. W. G. Chu, J. L. Dale, R. M. Harding, J. Hu, M. Kojima, K. M. Makkouk, V. Sana, J. E. Thomas, and H. J. Vetten. 2000. Nanovirus, p. 303-309. In M. H. V. van Regenmortel, C. M. Fauquet, D. H. L. Bishop, E. B. Carstens, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. J. McGeoch, C. R. Pringle, and R. B. Wickner (ed.), Seventh report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, Calif.
37. Revington, G. N., G. Sunter, and D. M. Bisaro. 1989. DNA sequences essential for replication of the B genome component of tomato golden mosaic virus. Plant Cell 1:985-992.
38. Samulski, R. J., A. Srivastava, K. I. Berns, and N. Muzyczka. 1983. Rescue of adeno-associated virus from recombinant plasmids: gene correction within the terminal repeats of AAV. Cell 33:135-143.
39. Sleinfeldt, T., T. Finsterbusch, and A. Mankertz. 2001. Rep and Rep' protein of porcine circovirus type 1 bind to the origin of replication in vitro. Virology 291:152-160.
40. Tischer, I., H. Gelderblom, W. Vettermann, and M. A. Koch. 1982. A very small porcine virus with circular single-stranded DNA. Nature 295:64-66.