Nanoviruses: Genome organisation and protein function

Veterinary Microbiology

Volumn 98, Issue 2, 2004, Pages 103-109

  Gronenborn, Bruno ^a  

^a CNRS   (France)

Author keywords

Cell cycle; F box; Protein structure; Rolling circle replication; Single stranded DNA plant virus

Indexed keywords

DNA POLYMERASE; HELICASE; RNA BINDING PROTEIN; SINGLE STRANDED DNA; VIRUS DNA; VIRUS PROTEIN;

BIRD DISEASE; CATALYSIS; CELL CYCLE; CONFERENCE PAPER; DNA REPLICATION; DNA SYNTHESIS; GEMINIVIRUS; GENOME ANALYSIS; MAMMAL; NANOVIRUS; NONHUMAN; PLANT VIRUS; PROTEIN DOMAIN; PROTEIN FUNCTION; STRUCTURE ANALYSIS; VIRION; VIROGENESIS; VIRUS GENOME; VIRUS INFECTION; VIRUS PARTICLE; VIRUS REPLICATION;

AVES; CIRCOVIRIDAE; GEMINIVIRIDAE; MAMMALIA; PARVOVIRUS; SSDNA VIRUSES;

EID: 1642452600     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2003.10.015     Document Type: Conference Paper

References (43)

1. Aronson M.N., Meyer A.D., Gyorgyey J., Katul L., Vetten H.J., Gronenborn B., Timchenko T. Clink, a nanovirus-encoded protein, binds both pRB and SKP1. J. Virol. 74:2000;2967-2972.
2. Beetham P.R., Hafner G.J., Harding R.M., Dale J.L. Two mRNAs are transcribed from banana bunchy top virus DNA-1. J. Gen. Virol. 78:1997;229-236.
3. Beetham P.R., Harding R.M., Dale J.L. Banana bunchy top virus DNA-2 to 6 are monocistronic. Arch. Virol. 144:1999;89-105.
4. Boevink P., Chu P.W., Keese P. Sequence of subterranean clover stunt virus DNA: affinities with the geminiviruses. Virology. 207:1995;354-361.
5. Briddon R.W., Mansoor S., Bedford I.D., Pinner M.S., Saunders K., Stanley J., Zafar Y., Malik K.A., Markham P.G. Identification of DNA components required for induction of cotton leaf curl disease. Virology. 285:2001;234-243.
6. Burns T.M., Harding R.M., Dale J.L. The genome organization of banana bunchy top virus: analysis of six ssDNA components. J. Gen. Virol. 76:1995;1471-1482.
7. Campos-Olivas R., Louis J.M., Clerot D., Gronenborn B., Gronenborn A.M. The structure of a replication initiator unites diverse aspects of nucleic acid metabolism. Proc. Natl. Acad. Sci. USA. 99:2002;10310-10315.
8. Chu, P., Boevink, P., Surin, B., Larkin, P., Keese, P., Waterhouse, P., 1995. Non-geminated single-stranded DNA plant viruses. In: Singh, R.P., Singh, U.S., Kohmoto, K. (Eds.), Pathogenesis and Host Specificity in Plant Diseases, vol. III, Viruses and Viroids. Pergamon Press, Tarrytown, NY, pp. 311-341.
9. Chu P.W., Helms K. Novel virus-like particles containing circular single-stranded DNAs associated with subterranean clover stunt disease. Virology. 167:1988;38-49.
10. Ciechanover A., Orian A., Schwartz A.L. Ubiquitin-mediated proteolysis: biological regulation via destruction. Bioessays. 22:2000;442-451.
11. Desbiez C., David C., Mettouchi A., Laufs J., Gronenborn B. Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc. Natl. Acad. Sci. USA. 92:1995;5640-5644.
12. Franz A., Makkouk K.M., Vetten H.J. Acquisition, retention and transmission of faba bean necrotic yellows virus by two of its aphid vectors, Aphis craccivora (Koch) and Acyrthosiphon pisum (Harris). J. Phytopathol. 146:1998;347-355.
13. Franz A.W., van der Wilk F., Verbeek M., Dullemans A.M., van den Heuvel J.F. Faba bean necrotic yellows virus (genus Nanovirus) requires a helper factor for its aphid transmission. Virology. 262:1999;210-219.
14. Gronenborn, B., Katul, L., Vetten, H.J., 2001. Genus Nanovirus. In: Tidona, C.A., Darai, G. (Eds.), The Springer Index of Viruses. Springer, Heidelberg, pp. 1272-1279.
15. Gutierrez C. DNA replication and cell cycle in plants: learning from geminiviruses. EMBO J. 19:2000;792-799.
16. Hafner G.J., Harding R.M., Dale J.L. A DNA primer associated with banana bunchy top virus. J. Gen. Virol. 78:1997;479-486.
17. Hanley-Bowdoin L., Settlage S.B., Orozco B.M., Nagar S., Robertson D. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. Crit. Rev. Biochem. Mol. Biol. 35:2000;105-140.
18. Harding R.M., Burns T.M., Dale J.L. Virus-like particles associated with banana bunchy top disease contain small single-stranded DNA. J. Gen. Virol. 72:1991;225-230.
19. Hickman A., Ronning D., Kotin R., Dyda F. Structural unity among viral origin binding proteins. Crystal structure of the nuclease domain of Adeno-associated virus. Rep. Mol. Cell. 10:2002;327.
20. Horser C., Harding R., Dale J. Banana bunchy top nanovirus DNA-1 encodes the 'master' replication initiation protein. J. Gen. Virol. 82:2001;459-464.
21. Horser C.L., Karan M., Harding R.M., Dale J.L. Additional rep-encoding DNAs associated with banana bunchy top virus. Arch. Virol. 146:2001;71-86.
22. Im D.S., Muzyczka N. The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity. Cell. 61:1990;447-457.
23. Katul L., Maiss E., Morozov S.Y., Vetten H.J. Analysis of six DNA components of the faba bean necrotic yellows virus genome and their structural affinity to related plant virus genomes. Virology. 233:1997;247-259.
24. Katul L., Maiss E., Vetten H.J. Sequence analysis of a faba bean necrotic yellows virus DNA component containing a putative replicase gene. J. Gen. Virol. 76:1995;475-479.
25. Katul L., Timchenko T., Gronenborn B., Vetten H.J. Ten distinct circular ssDNA components, four of which encode putative replication-associated proteins, are associated with the faba bean necrotic yellows virus genome. J. Gen. Virol. 79:1998;3101-3109.
26. Koonin E.V., Ilyina T.V. Computer-assisted dissection of rolling circle DNA replication. Biosystems. 30:1993;241-268.
27. Laufs J., Jupin I., David C., Schumacher S., Heyraud-Nitschke F., Gronenborn B. Geminivirus replication: genetic and biochemical characterization of Rep protein function, a review. Biochimie. 77:1995;765-773.
28. Laufs J., Traut W., Heyraud F., Matzeit V., Rogers S.G., Schell J., Gronenborn B. In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. USA. 92:1995;3879-3883.
29. Lazarowitz S.G., Beachy R.N. Viral movement proteins as probes for intracellular and intercellular trafficking in plants. Plant Cell. 11:1999;535-548.
30. Mankertz A., Hillenbrand B. Replication of porcine circovirus type 1 requires two proteins encoded by the viral rep gene. Virology. 279:2001;429-438.
31. Mansoor S., Khan S.H., Bashir A., Saeed M., Zafar Y., Malik K.A., Briddon R., Stanley J., Markham P.G. Identification of a novel circular single-stranded DNA associated with cotton leaf curl disease in Pakistan. Virology. 259:1999;190-199.
32. Orozco B.M., Kong L.J., Batts L.A., Elledge S., Hanley-Bowdoin L. The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties. J. Biol. Chem. 275:2000;6114-6122.
33. Randles, J.W., Chu, P.W.G., Dale, J.L., Harding, R.M., Hu, J., Kojima, M., Makkouk, K.M., Sano, Y., Thomas, J.E., Vetten, H.J., 2000. Genus Nanovirus. In: Van Regenmortel, M.H.V., Fauquet, C.M., Bishop, D.H.L. (Eds.), Virus Taxonomy, Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego, London, pp. 303-309.
34. Rohde W., Randles J.W., Langridge P., Hanold D. Nucleotide sequence of a circular single-stranded DNA associated with coconut foliar decay virus. Virology. 176:1990;648-651.
35. Sano Y., Wada M., Hashimoto Y., Matsumoto T., Kojima M. Sequences of ten circular ssDNA components associated with the milk vetch dwarf virus genome. J. Gen. Virol. 79:1998;3111-3118.
36. Saunders K., Bedford I.D., Briddon R.W., Markham P.G., Wong S.M., Stanley J. A unique virus complex causes Ageratum yellow vein disease. Proc. Natl. Acad. Sci. USA. 97:2000;6890-6895.
37. Saunders K., Lucy A., Stanley J. DNA forms of the geminivirus African cassava mosaic virus consistent with a rolling circle mechanism of replication. Nucl. Acids Res. 19:1991;2325-2330.
38. Saunders K., Stanley J. A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for interfamilial recombination between plant DNA viruses. Virology. 264:1999;142-152.
39. Timchenko T., de Kouchkovsky F., Katul L., David C., Vetten H.J., Gronenborn B. A single rep protein initiates replication of multiple genome components of faba bean necrotic yellows virus, a single-stranded DNA virus of plants. J. Virol. 73:1999;10173-10182.
40. Timchenko T., Katul L., Sano Y., de Kouchkovsky F., Vetten H.J., Gronenborn B. The master rep concept in nanovirus replication: identification of missing genome components and potential for natural genetic reassortment. Virology. 274:2000;189-195.
41. Todd D., McNulty M.S., Adair B.M., Allan G.M. Animal circoviruses. Adv. Virus Res. 57:2001;1-70.
42. Wanitchakorn R., Hafner G.J., Harding R.M., Dale J.L. Functional analysis of proteins encoded by banana bunchy top virus DNA-4 to -6. J. Gen. Virol. 81:2000;299-306.
43. Wanitchakorn R., Harding R.M., Dale J.L. Banana bunchy top virus DNA-3 encodes the viral coat protein. Arch. Virol. 142:1997;1673-1680.