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Volumn 332, Issue 1, 2005, Pages 359-368

Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus

Author keywords

Cucumber mosaic virus; Genetic exchange; Reassortment; Recombination; Risk assessment; Virus evolution; Virus resistant transgenic plants

Indexed keywords

HYBRID PROTEIN; VIRUS PROTEIN;

EID: 12344296268     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virol.2004.11.017     Document Type: Article
Times cited : (114)

References (42)
  • 1
    • 0033604306 scopus 로고    scopus 로고
    • Recombination between genomic RNAs of two cucumoviruses under conditions of minimal selection pressure
    • R. Aaziz, and M. Tepfer Recombination between genomic RNAs of two cucumoviruses under conditions of minimal selection pressure Virology 263 1999 282 289
    • (1999) Virology , vol.263 , pp. 282-289
    • Aaziz, R.1    Tepfer, M.2
  • 2
    • 0027197652 scopus 로고
    • Genetic variability and evolution of the satellite RNA of cucumber mosaic virus during natural epidemics
    • M.A. Aranda, A. Fraile, and F. García-Arenal Genetic variability and evolution of the satellite RNA of cucumber mosaic virus during natural epidemics J. Virol. 67 1993 5896 5901
    • (1993) J. Virol. , vol.67 , pp. 5896-5901
    • Aranda, M.A.1    Fraile, A.2    García-Arenal, F.3
  • 3
    • 0029174606 scopus 로고
    • Experimental evaluation of the ribonuclease protection assay method for assessment of genetic heterogeneity in populations of RNA viruses
    • M.A. Aranda, A. Fraile, F. Garcia-Arenal, and J.M. Malpica Experimental evaluation of the ribonuclease protection assay method for assessment of genetic heterogeneity in populations of RNA viruses Arch. Virol. 140 1995 1373 1383
    • (1995) Arch. Virol. , vol.140 , pp. 1373-1383
    • Aranda, M.A.1    Fraile, A.2    Garcia-Arenal, F.3    Malpica, J.M.4
  • 4
    • 0030481107 scopus 로고    scopus 로고
    • Mechanisms of pathogen derived resistance to viruses in transgenic plants
    • D.C. Baulcombe Mechanisms of pathogen derived resistance to viruses in transgenic plants Plant Cell 8 1996 1833 1844
    • (1996) Plant Cell , vol.8 , pp. 1833-1844
    • Baulcombe, D.C.1
  • 5
    • 0033999634 scopus 로고    scopus 로고
    • Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus
    • A. Bruyere, M. Wantroba, S. Flasinsky, A. Dzianott, and J.J. Bujarski Frequent homologous recombination events between molecules of one RNA component in a multipartite RNA virus J. Virol. 74 2000 4214 4219
    • (2000) J. Virol. , vol.74 , pp. 4214-4219
    • Bruyere, A.1    Wantroba, M.2    Flasinsky, S.3    Dzianott, A.4    Bujarski, J.J.5
  • 6
    • 0036196421 scopus 로고    scopus 로고
    • Inter- and intramolecular recombinations in CMV genome related to adaptation to Alstroemeria
    • Y.K. Chen, R. Goldbach, and M. Prins Inter- and intramolecular recombinations in CMV genome related to adaptation to Alstroemeria J. Virol. 76 2002 4119 4124
    • (2002) J. Virol. , vol.76 , pp. 4119-4124
    • Chen, Y.K.1    Goldbach, R.2    Prins, M.3
  • 7
    • 0034630910 scopus 로고    scopus 로고
    • Viruses at the edge of adaptation
    • E. Domingo Viruses at the edge of adaptation Virology 270 2000 251 253
    • (2000) Virology , vol.270 , pp. 251-253
    • Domingo, E.1
  • 8
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • E. Domingo, and J.J. Holland RNA virus mutations and fitness for survival Annu. Rev. Microbiol. 51 1997 151 178
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 11
    • 0028213551 scopus 로고
    • Will transgenic crops generate new viruses and new diseases?
    • B.W. Falk, and G. Bruening Will transgenic crops generate new viruses and new diseases? Science 263 1994 1395 1396
    • (1994) Science , vol.263 , pp. 1395-1396
    • Falk, B.W.1    Bruening, G.2
  • 12
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences-A maximum likelihood approach
    • J. Felsenstein Evolutionary trees from DNA sequences-A maximum likelihood approach J. Mol. Evol. 17 1981 368 376
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 13
    • 0002918460 scopus 로고
    • Problem of discovering most parsimonious tree
    • W.M. Fitch Problem of discovering most parsimonious tree Am. Nat. 111 1977 223 257
    • (1977) Am. Nat. , vol.111 , pp. 223-257
    • Fitch, W.M.1
  • 14
    • 0031015206 scopus 로고    scopus 로고
    • Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus
    • A. Fraile, J.L. Alonso-Prados, M.A. Aranda, J.J. Bernal, J.M. Malpica, and F. García-Arenal Genetic exchange by recombination or reassortment is infrequent in natural populations of a tripartite RNA plant virus J. Virol. 7 1997 934 940
    • (1997) J. Virol. , vol.7 , pp. 934-940
    • Fraile, A.1    Alonso-Prados, J.L.2    Aranda, M.A.3    Bernal, J.J.4    Malpica, J.M.5    García-Arenal, F.6
  • 15
    • 0034546516 scopus 로고    scopus 로고
    • The ecology of cucumber mosaic virus and sustainable agriculture
    • D. Gallitelli The ecology of cucumber mosaic virus and sustainable agriculture Virus Res. 71 2000 9 21
    • (2000) Virus Res. , vol.71 , pp. 9-21
    • Gallitelli, D.1
  • 16
    • 18844479256 scopus 로고    scopus 로고
    • An analysis of the durability of the resistance to plant viruses
    • F. García-Arenal, and B.A. McDonald An analysis of the durability of the resistance to plant viruses Phytopathology 93 2003 941 952
    • (2003) Phytopathology , vol.93 , pp. 941-952
    • García-Arenal, F.1    McDonald, B.A.2
  • 18
    • 0029963710 scopus 로고    scopus 로고
    • A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
    • I.B. Jakobsen, and S.A. Eastel A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences Comput. Appl. Biosci. 12 1996 291 295
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 291-295
    • Jakobsen, I.B.1    Eastel, S.A.2
  • 19
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • M. Kimura A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 1980 111 120
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 0034538254 scopus 로고    scopus 로고
    • Cassava mosaic virus disease in East Africa: A dynamic disease in a changing environment
    • J.P. Legg, and J.M. Thresh Cassava mosaic virus disease in East Africa: a dynamic disease in a changing environment Virus Res. 73 2000 135 149
    • (2000) Virus Res. , vol.73 , pp. 135-149
    • Legg, J.P.1    Thresh, J.M.2
  • 21
    • 0037234755 scopus 로고    scopus 로고
    • Genetic diversity and biological variation among California isolates of Cucumber mosaic virus
    • H.-X. Lin, L. Rubio, A. Smythe, M. Jiminez, and B.W. Falk Genetic diversity and biological variation among California isolates of Cucumber mosaic virus J. Gen. Virol. 84 2003 249 258
    • (2003) J. Gen. Virol. , vol.84 , pp. 249-258
    • Lin, H.-X.1    Rubio, L.2    Smythe, A.3    Jiminez, M.4    Falk, B.W.5
  • 22
    • 0002072362 scopus 로고
    • Contribution à l' étude du virus de la mosaïque du concombre (CMV). Méthode de purification rapide du virus
    • H. Lot, J. Marrou, J.B. Quiot, and C. Esvan Contribution à l' étude du virus de la mosaïque du concombre (CMV). Méthode de purification rapide du virus Ann. Phytopathol. 4 1972 25 38
    • (1972) Ann. Phytopathol. , vol.4 , pp. 25-38
    • Lot, H.1    Marrou, J.2    Quiot, J.B.3    Esvan, C.4
  • 24
    • 1242342116 scopus 로고    scopus 로고
    • Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain
    • I. Moreno, J.M. Malpica, J.A. Díaz-Pendón, E. Moriones, A. Fraile, and F. García-Arenal Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain Virology 318 2003 451 460
    • (2003) Virology , vol.318 , pp. 451-460
    • Moreno, I.1    Malpica, J.M.2    Díaz-Pendón, J.A.3    Moriones, E.4    Fraile, A.5    García-Arenal, F.6
  • 25
    • 0030759896 scopus 로고    scopus 로고
    • New insights into the mechanisms of RNA recombination
    • P.D. Nagy, and A.E. Simon New insights into the mechanisms of RNA recombination Virology 235 1997 1 9
    • (1997) Virology , vol.235 , pp. 1-9
    • Nagy, P.D.1    Simon, A.E.2
  • 27
    • 0030203863 scopus 로고    scopus 로고
    • Treeview-An application to display phylogenetic trees on personal computers
    • R.D.M. Page Treeview-An application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 124 1996 357 358
    • (1996) Comput. Appl. Biosci. , vol.124 , pp. 357-358
    • Page, R.D.M.1
  • 28
    • 0020067634 scopus 로고
    • Variation of influenza A, B and C viruses
    • P. Palese, and J.F. Young Variation of influenza A, B and C viruses Science 215 1982 1468 1474
    • (1982) Science , vol.215 , pp. 1468-1474
    • Palese, P.1    Young, J.F.2
  • 30
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • D. Posada, and K.A. Crandall Evaluation of methods for detecting recombination from DNA sequences: computer simulations Proc. Natl. Acad. Sci. U.S.A. 98 2001 13757 13762
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0030614142 scopus 로고    scopus 로고
    • Mechanisms of plant virus evolution
    • M.J. Roossinck Mechanisms of plant virus evolution Annu. Rev. Phytopathol. 35 1997 191 209
    • (1997) Annu. Rev. Phytopathol. , vol.35 , pp. 191-209
    • Roossinck, M.J.1
  • 32
    • 0036122463 scopus 로고    scopus 로고
    • Evolutionary history of cucumber mosaic virus deduced by phylogenetic analyses
    • M.J. Roossinck Evolutionary history of cucumber mosaic virus deduced by phylogenetic analyses J. Virol. 76 2002 3382 3387
    • (2002) J. Virol. , vol.76 , pp. 3382-3387
    • Roossinck, M.J.1
  • 33
    • 0032811052 scopus 로고    scopus 로고
    • Rearrangements in the 5′ non-translated region and phylogenetic analyses of cucumber mosaic virus RNA3 indicate radial evolution of three subgroups
    • M.J. Roossinck, L. Zhang, and K. Hellwald Rearrangements in the 5′ non-translated region and phylogenetic analyses of cucumber mosaic virus RNA3 indicate radial evolution of three subgroups J. Virol. 73 1999 6752 6758
    • (1999) J. Virol. , vol.73 , pp. 6752-6758
    • Roossinck, M.J.1    Zhang, L.2    Hellwald, K.3
  • 34
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 35
    • 1842854054 scopus 로고    scopus 로고
    • Compatibility of the movement protein and the coat protein of cucumoviruses is required for cell-to-cell movement
    • K. Salánki, A. Gellért, E. Huppert, G. Náray- Szabó, and E. Balázs Compatibility of the movement protein and the coat protein of cucumoviruses is required for cell-to-cell movement J. Gen. Virol. 85 2004 1039 1048
    • (2004) J. Gen. Virol. , vol.85 , pp. 1039-1048
    • Salánki, K.1    Gellért, A.2    Huppert, E.3    Náray-Szabó, G.4    Balázs, E.5
  • 36
    • 0024356449 scopus 로고
    • Statistical test for detecting gene conversion
    • S. Sawyer Statistical test for detecting gene conversion Mol. Biol. Evol. 6 1989 526 538
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 37
    • 0004249246 scopus 로고
    • 3rd ed. Freeman and Company New York
    • R.R. Sokal, and F.J. Rohlf Biometry 3rd ed. 1995 Freeman and Company New York
    • (1995) Biometry
    • Sokal, R.R.1    Rohlf, F.J.2
  • 38
    • 0036031307 scopus 로고    scopus 로고
    • Risk assessment of virus-resistant transgenic plants
    • M. Tepfer Risk assessment of virus-resistant transgenic plants Annu. Rev. Phytopathol. 40 2002 467 491
    • (2002) Annu. Rev. Phytopathol. , vol.40 , pp. 467-491
    • Tepfer, M.1
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 41
    • 0032853634 scopus 로고    scopus 로고
    • Evolutionary aspects of recombination in RNA viruses
    • M. Worobey, and E.C. Holmes Evolutionary aspects of recombination in RNA viruses J. Gen. Virol. 80 1999 2535 2543
    • (1999) J. Gen. Virol. , vol.80 , pp. 2535-2543
    • Worobey, M.1    Holmes, E.C.2
  • 42
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • X. Xia, and Z. Xie DAMBE: data analysis in molecular biology and evolution J. Hered. 92 2001 371 373
    • (2001) J. Hered. , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.