-
2
-
-
0033601201
-
Linkage disequilibrium and recombination in hominid mitochondrial DNA
-
Awadalla P, Eyre-Walker A, Maynard Smith J. 1999. Linkage disequilibrium and recombination in hominid mitochondrial DNA. Science. 286:2524-2525.
-
(1999)
Science
, vol.286
, pp. 2524-2525
-
-
Awadalla, P.1
Eyre-Walker, A.2
Maynard Smith, J.3
-
3
-
-
0033914873
-
Comparative genomics of mitochondrial DNA in members of the the Drosophila melanogaster subgroup
-
Ballard JW. 2000. Comparative genomics of mitochondrial DNA in members of the the Drosophila melanogaster subgroup. J Mol Evol. 51:48-63.
-
(2000)
J Mol Evol
, vol.51
, pp. 48-63
-
-
Ballard, J.W.1
-
4
-
-
33646253454
-
Population size does not influence mitochondrial genetic diversity in animals
-
Bazin E, Glémin S, Galtier N. 2006. Population size does not influence mitochondrial genetic diversity in animals. Science. 312:570-572.
-
(2006)
Science
, vol.312
, pp. 570-572
-
-
Bazin, E.1
Glémin, S.2
Galtier, N.3
-
5
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
Bruen TC, Philippe H, Bryant D. 2006. A simple and robust statistical test for detecting the presence of recombination. Genetics. 172:2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
6
-
-
56049094112
-
Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic Cod (Gadus morhua): Origins of the "codmother," transatlantic vicariance, and midglacial population expansion
-
Carr SM, Marshall HD. 2008a. Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic Cod (Gadus morhua): origins of the "codmother," transatlantic vicariance, and midglacial population expansion. Genetics. 108:381-389.
-
(2008)
Genetics
, vol.108
, pp. 381-389
-
-
Carr, S.M.1
Marshall, H.D.2
-
7
-
-
68349100065
-
Phylogeographic analysis of complete mtDNA genomes from Walleye pollock shows an ancient origin of Norwegian Pollock
-
doi 10.1080/19401730802570942
-
Carr SM, Marshall HD. 2008b. Phylogeographic analysis of complete mtDNA genomes from Walleye pollock shows an ancient origin of Norwegian Pollock. Mitochondrial DNA. doi 10.1080/19401730802570942.
-
(2008)
Mitochondrial DNA
-
-
Carr, S.M.1
Marshall, H.D.2
-
8
-
-
39349083781
-
Phylogeographic genomics of mitochondrial DNA: Highly-resolved patterns of intraspecific evolution and a multi-species, microarray-based DNA sequencing strategy for biodiversity studies
-
Carr SM, Marshall HD, Duggan AT, Flynn SMC, Johnstone KA, Pope AM, Wilkerson CD. 2008. Phylogeographic genomics of mitochondrial DNA: highly-resolved patterns of intraspecific evolution and a multi-species, microarray-based DNA sequencing strategy for biodiversity studies. Comp Biochem Physiol Part D Genomics and Proteomics. 3:1-11.
-
(2008)
Comp Biochem Physiol Part D Genomics and Proteomics
, vol.3
, pp. 1-11
-
-
Carr, S.M.1
Marshall, H.D.2
Duggan, A.T.3
Flynn, S.M.C.4
Johnstone, K.A.5
Pope, A.M.6
Wilkerson, C.D.7
-
9
-
-
33847034057
-
Mitochondrial genomics of gadine fish: Implications for taxonomy and biogeographic origins from whole-genome data sets
-
Coulson MW, Marshall HD, Pepin P, Carr SM. 2006. Mitochondrial genomics of gadine fish: implications for taxonomy and biogeographic origins from whole-genome data sets. Genome. 49:1315-1320.
-
(2006)
Genome
, vol.49
, pp. 1315-1320
-
-
Coulson, M.W.1
Marshall, H.D.2
Pepin, P.3
Carr, S.M.4
-
10
-
-
0842285683
-
Comparative genomics and the evolution of human mitochondrial DNA: Assessing the effects of selection
-
Elson JL, Turnbull DM, Howell N. 2004. Comparative genomics and the evolution of human mitochondrial DNA: assessing the effects of selection. Am J Hum Genet. 74:229-238.
-
(2004)
Am J Hum Genet
, vol.74
, pp. 229-238
-
-
Elson, J.L.1
Turnbull, D.M.2
Howell, N.3
-
11
-
-
33646271382
-
Size does not matter for mitochondrial DNA
-
Eyre-Walker A. 2006. Size does not matter for mitochondrial DNA. Science. 312:537-538.
-
(2006)
Science
, vol.312
, pp. 537-538
-
-
Eyre-Walker, A.1
-
12
-
-
32044448490
-
Mutation hot spots in mammalian mitochondrial DNA
-
Galtier N, Enard D, Radondy Y, Bazin E, Belkhir K. 2006. Mutation hot spots in mammalian mitochondrial DNA. Genome Res. 16:215-222.
-
(2006)
Genome Res
, vol.16
, pp. 215-222
-
-
Galtier, N.1
Enard, D.2
Radondy, Y.3
Bazin, E.4
Belkhir, K.5
-
13
-
-
2642646229
-
Mitochondrial DNA haplotype frequencies in natural and experimental populations of Drosophila subobscura
-
García-Martínez J, Castro JA, Ramón M, Latorre A, Moya A. 1998. Mitochondrial DNA haplotype frequencies in natural and experimental populations of Drosophila subobscura. Genetics. 149:1377-1382.
-
(1998)
Genetics
, vol.149
, pp. 1377-1382
-
-
García-Martínez, J.1
Castro, J.A.2
Ramón, M.3
Latorre, A.4
Moya, A.5
-
14
-
-
0034082076
-
Genetic drift in an infinite population: The pseudohitchhiking model
-
Gillespie JH. 2000. Genetic drift in an infinite population: the pseudohitchhiking model. Genetics. 155:909-919.
-
(2000)
Genetics
, vol.155
, pp. 909-919
-
-
Gillespie, J.H.1
-
15
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Grantham R. 1974. Amino acid difference formula to help explain protein evolution. Science. 85:862-864.
-
(1974)
Science
, vol.85
, pp. 862-864
-
-
Grantham, R.1
-
16
-
-
0031729188
-
Preponderance of slightly deleterious polymorphism in mitochondrial DNA: Nonsynonymous/synonymous rate ratio is much higher within species than between species
-
Hasegawa M, Cao Y, Yang Z. 1998. Preponderance of slightly deleterious polymorphism in mitochondrial DNA: nonsynonymous/synonymous rate ratio is much higher within species than between species. Mol Biol Evol. 15:1499-1505.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1499-1505
-
-
Hasegawa, M.1
Cao, Y.2
Yang, Z.3
-
17
-
-
0001160612
-
Linkage disequilibrium in finite populations
-
Hill W, Robertson A. 1968. Linkage disequilibrium in finite populations. Theor Appl Genet. 33:54-78.
-
(1968)
Theor Appl Genet
, vol.33
, pp. 54-78
-
-
Hill, W.1
Robertson, A.2
-
18
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogeny
-
Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogeny. Bioinformatics. 17:754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
19
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 23:254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
20
-
-
34548773393
-
Rate variation between mitochondrial domains and adaptive evolution in humans
-
Ingman M, Gyllensten U. 2007. Rate variation between mitochondrial domains and adaptive evolution in humans. Hum Mol Genet. 16:2281-2287.
-
(2007)
Hum Mol Genet
, vol.16
, pp. 2281-2287
-
-
Ingman, M.1
Gyllensten, U.2
-
21
-
-
0034619822
-
Mitochondrial genome variation and the origin of modern humans
-
Ingman M, Kaessmann H, Pääbo S, Gyllensten U. 2000. Mitochondrial genome variation and the origin of modern humans. Nature. 408:708-713.
-
(2000)
Nature
, vol.408
, pp. 708-713
-
-
Ingman, M.1
Kaessmann, H.2
Pääbo, S.3
Gyllensten, U.4
-
22
-
-
2442609784
-
Recombination of human mitochondrial DNA
-
Kraytsberg Y, Schwartz M, Brown TA, Ebralidse K, Kunz WS, Clayton DA, Vissing J, Khrapko K. 2004. Recombination of human mitochondrial DNA. Science. 304:981.
-
(2004)
Science
, vol.304
, pp. 981
-
-
Kraytsberg, Y.1
Schwartz, M.2
Brown, T.A.3
Ebralidse, K.4
Kunz, W.S.5
Clayton, D.A.6
Vissing, J.7
Khrapko, K.8
-
23
-
-
0002907949
-
The interaction of selection and linkage. I. general considerations; heterotic models
-
Lewontin RC. 1964. The interaction of selection and linkage. I. general considerations; heterotic models. Genetics. 49:49-67.
-
(1964)
Genetics
, vol.49
, pp. 49-67
-
-
Lewontin, R.C.1
-
25
-
-
0031897789
-
Detecting recombination from gene trees
-
Maynard Smith J, Smith NH. 1998. Detecting recombination from gene trees. Mol Biol Evol. 15:590-599.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 590-599
-
-
Maynard Smith, J.1
Smith, N.H.2
-
26
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald JH, Kreitman M. 1991. Adaptive protein evolution at the Adh locus in Drosophila. Nature. 351:652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
27
-
-
0035544521
-
What do patterns of genetic variability reveal about mitochondrial recombination?
-
McVean GAT. 2001. What do patterns of genetic variability reveal about mitochondrial recombination? Heredity. 87:613-620.
-
(2001)
Heredity
, vol.87
, pp. 613-620
-
-
McVean, G.A.T.1
-
28
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination from gene sequences
-
McVean G, Awadalla P, Fearnhead P. 2002. A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics. 160:1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
McVean, G.1
Awadalla, P.2
Fearnhead, P.3
-
29
-
-
34249062487
-
Positive and negative selection on the mitochondrial genome
-
Meiklejohn CD, Montooth KL, Rand DM. 2007. Positive and negative selection on the mitochondrial genome. Trends Genet. 23:259-263.
-
(2007)
Trends Genet
, vol.23
, pp. 259-263
-
-
Meiklejohn, C.D.1
Montooth, K.L.2
Rand, D.M.3
-
30
-
-
0037422550
-
-
Mishmar D, Ruiz-Pesini E, Golik P, et al. (13 co-authors). 2003. Natural selection shaped regional mtDNA variation in humans. Proc Nat Acad Sci USA. 100:171-176.
-
Mishmar D, Ruiz-Pesini E, Golik P, et al. (13 co-authors). 2003. Natural selection shaped regional mtDNA variation in humans. Proc Nat Acad Sci USA. 100:171-176.
-
-
-
-
31
-
-
33746293532
-
Adaptive selection of mitochondrial complex I subunits during primate radiation
-
Mishmar D, Ruiz-Pesini E, Mondragon-Palomino M, Procaccio V, Gaut B, Wallace DC. 2006. Adaptive selection of mitochondrial complex I subunits during primate radiation. Gene. 378:11-18.
-
(2006)
Gene
, vol.378
, pp. 11-18
-
-
Mishmar, D.1
Ruiz-Pesini, E.2
Mondragon-Palomino, M.3
Procaccio, V.4
Gaut, B.5
Wallace, D.C.6
-
32
-
-
0347986768
-
Lineage-specific selection in human mtDNA: Lack of polymorphisms in a segment of MTND5 gene in haplogroup
-
Moilanen JS, Finnilä S, Majamaa K. 2003. Lineage-specific selection in human mtDNA: lack of polymorphisms in a segment of MTND5 gene in haplogroup J. Mol Biol Evol. 20:2132-2142.
-
(2003)
J. Mol Biol Evol
, vol.20
, pp. 2132-2142
-
-
Moilanen, J.S.1
Finnilä, S.2
Majamaa, K.3
-
33
-
-
34249083225
-
Comment on "population size does not influence mitochondrial genetic diversity in animals". 2006
-
Mulligan CJ, Kitchen A, Miyamoto MM. 2006. Comment on "population size does not influence mitochondrial genetic diversity in animals". 2006. Science. 314:1390a.
-
(2006)
Science
, vol.314
-
-
Mulligan, C.J.1
Kitchen, A.2
Miyamoto, M.M.3
-
34
-
-
0030011347
-
Nonneutral mitochondrial DNA variation in humans and chimpanzees
-
Nachman MW, Brown WM, Stoneking M, Aquadro CF. 1996. Nonneutral mitochondrial DNA variation in humans and chimpanzees. Genetics. 142:953-963.
-
(1996)
Genetics
, vol.142
, pp. 953-963
-
-
Nachman, M.W.1
Brown, W.M.2
Stoneking, M.3
Aquadro, C.F.4
-
35
-
-
0031989411
-
Do the combined effects of the asymmetric process of replication and DNA damage from oxygen radicals produce a mutation-rate signature in the mitochondrial genome?
-
Nedbal MA, Flynn JJ. 1998. Do the combined effects of the asymmetric process of replication and DNA damage from oxygen radicals produce a mutation-rate signature in the mitochondrial genome? Mol Biol Evol. 15:219-223.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 219-223
-
-
Nedbal, M.A.1
Flynn, J.J.2
-
38
-
-
0031972161
-
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
-
Nielsen R, Yang Z. 1998. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene. Genetics. 148:929-936.
-
(1998)
Genetics
, vol.148
, pp. 929-936
-
-
Nielsen, R.1
Yang, Z.2
-
39
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta T. 1973. Slightly deleterious mutant substitutions in evolution. Nature. 246:96-98.
-
(1973)
Nature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
40
-
-
8444235408
-
A broad survey of recombination in animal mitochondria
-
Piganeau G, Gardner M, Eyre-Walker A. 2004. A broad survey of recombination in animal mitochondria. Mol Biol Evol. 21:2319-2325.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2319-2325
-
-
Piganeau, G.1
Gardner, M.2
Eyre-Walker, A.3
-
41
-
-
34548082528
-
Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals
-
Popadin K, Polishchuk LV, Mamirova L, Knorre D, Gunbin K. 2007. Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals. Proc Nat Acad Sci USA. 104:13390-13395.
-
(2007)
Proc Nat Acad Sci USA
, vol.104
, pp. 13390-13395
-
-
Popadin, K.1
Polishchuk, L.V.2
Mamirova, L.3
Knorre, D.4
Gunbin, K.5
-
42
-
-
0027942996
-
Neutral and nonneutral evolution of Drosophila mitochondrial DNA
-
Rand DM, Dorfsman M, Kann LM. 1994. Neutral and nonneutral evolution of Drosophila mitochondrial DNA. Genetics. 138:741-756.
-
(1994)
Genetics
, vol.138
, pp. 741-756
-
-
Rand, D.M.1
Dorfsman, M.2
Kann, L.M.3
-
43
-
-
0030000951
-
Excess amino acid polymorphism in mitochondrial DNA: Contrasts among genes from Drosophila, mice, and humans
-
Rand DM, Kann LM. 1996. Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol Biol Evol. 13:735-748.
-
(1996)
Mol Biol Evol
, vol.13
, pp. 735-748
-
-
Rand, D.M.1
Kann, L.M.2
-
44
-
-
0041386108
-
MRBAYES 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
45
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19:2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
46
-
-
0033793521
-
Consequences of recombination on traditional phylogenetic analysis
-
Schierup MH, Hein J. 2000. Consequences of recombination on traditional phylogenetic analysis. Genetics. 156:879-891.
-
(2000)
Genetics
, vol.156
, pp. 879-891
-
-
Schierup, M.H.1
Hein, J.2
-
47
-
-
0037158599
-
Paternal inheritance of mitochondrial DNA
-
Schwartz M, Vissing J. 2002. Paternal inheritance of mitochondrial DNA. N Engl J Med. 347:576-580.
-
(2002)
N Engl J Med
, vol.347
, pp. 576-580
-
-
Schwartz, M.1
Vissing, J.2
-
48
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
49
-
-
34547781750
-
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599
-
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596-1599.
-
-
-
-
50
-
-
0027966917
-
Strand asymmetry in human mitochondrial DNA mutations
-
Tanaka M, Ozawa T. 1994. Strand asymmetry in human mitochondrial DNA mutations. Genomics. 22:327-335.
-
(1994)
Genomics
, vol.22
, pp. 327-335
-
-
Tanaka, M.1
Ozawa, T.2
-
51
-
-
0029909631
-
Contingency tests of neutrality using intra/interspecfic gene trees: The rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates
-
Templeton AR. 1996. Contingency tests of neutrality using intra/interspecfic gene trees: the rejection of neutrality for the evolution of the mitochondrial cytochrome oxidase II gene in the hominoid primates. Genetics. 144:1263-1270.
-
(1996)
Genetics
, vol.144
, pp. 1263-1270
-
-
Templeton, A.R.1
-
52
-
-
0029911367
-
Mammalian mitochondrial possess homologous DNA recombination activity
-
Thygarajan B, Padua RA, Campbell C. 1996. Mammalian mitochondrial possess homologous DNA recombination activity. J Biol Chem. 271:27536-27543.
-
(1996)
J Biol Chem
, vol.271
, pp. 27536-27543
-
-
Thygarajan, B.1
Padua, R.A.2
Campbell, C.3
-
53
-
-
33646929523
-
Harvesting the fruit of the human mtDNA tree
-
Torroni A, Achilli A, Macaulay V, Richards M, Bandelt HJ. 2006. Harvesting the fruit of the human mtDNA tree. Trends Genet. 22:339-345.
-
(2006)
Trends Genet
, vol.22
, pp. 339-345
-
-
Torroni, A.1
Achilli, A.2
Macaulay, V.3
Richards, M.4
Bandelt, H.J.5
-
54
-
-
16344387680
-
Widespread recombination in published animal mtDNA sequences
-
Tsaousis AD, Martin DP, Ladoukakis ED, Posada D, Zouros E. 2005. Widespread recombination in published animal mtDNA sequences. Mol Biol Evol. 22:925-933.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 925-933
-
-
Tsaousis, A.D.1
Martin, D.P.2
Ladoukakis, E.D.3
Posada, D.4
Zouros, E.5
-
55
-
-
34250833444
-
A mitogenomic approach to the taxonomy of pollocks: Theragra chalcogramma and T. finnmarchica represent one single species
-
Ursvik A, Breines R, Christiansen JS, Fevolden S-E, Coucheron DH, Johansen SD. 2007. A mitogenomic approach to the taxonomy of pollocks: Theragra chalcogramma and T. finnmarchica represent one single species. BMC Evol Biol. 7:86.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 86
-
-
Ursvik, A.1
Breines, R.2
Christiansen, J.S.3
Fevolden, S.-E.4
Coucheron, D.H.5
Johansen, S.D.6
-
56
-
-
7544239862
-
Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma
-
Yanagimoto T, Kitamura T, Kobayashi T. 2004. Complete nucleotide sequence and variation of mitochondrial DNA from 10 individuals of walleye pollock, Theragra chalcogramma. Fish Sci. 70:885-895.
-
(2004)
Fish Sci
, vol.70
, pp. 885-895
-
-
Yanagimoto, T.1
Kitamura, T.2
Kobayashi, T.3
-
57
-
-
17044410142
-
Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies
-
Zink RM. 2005. Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies. Proc R Soc Lond B Biol Sci. 272:71-78.
-
(2005)
Proc R Soc Lond B Biol Sci
, vol.272
, pp. 71-78
-
-
Zink, R.M.1
|