메뉴 건너뛰기




Volumn 15, Issue 5, 1998, Pages 590-599

Detecting recombination from gene trees

Author keywords

Effective number of sites; Gene trees; Homoplasy Test; Recombination

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIAL GENETICS; BORRELIA; ESCHERICHIA COLI; GENE SEQUENCE; GENETIC RECOMBINATION; NEISSERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY;

EID: 0031897789     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025960     Document Type: Article
Times cited : (195)

References (35)
  • 1
    • 0028053174 scopus 로고
    • Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enterica
    • BOYD, E. F., K. NELSON, F. S. WANG, T. S. WHITTAM, and R. K. SELANDER. 1994. Molecular genetic basis of allelic polymorphism in malate dehydrogenase (mdh) in natural populations of Escherichia coli and Salmonella enterica. Proc. Natl. Acad. Sci. USA 91:1280-1284.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1280-1284
    • Boyd, E.F.1    Nelson, K.2    Wang, F.S.3    Whittam, T.S.4    Selander, R.K.5
  • 2
    • 0001714012 scopus 로고
    • Multilocus structure of natural populations of Hordeum spontaneum
    • BROWN, A. H. D., M. W. FELDMAN, and E. NEVO. 1980. Multilocus structure of natural populations of Hordeum spontaneum. Genetics. 96:523-536.
    • (1980) Genetics , vol.96 , pp. 523-536
    • Brown, A.H.D.1    Feldman, M.W.2    Nevo, E.3
  • 3
    • 84993842127 scopus 로고
    • Are codon usage patterns in unicellular organisms determined by selection-mutation balance?
    • BULMER, M. 1988. Are codon usage patterns in unicellular organisms determined by selection-mutation balance? J. Evol. Biol. 1:15-26.
    • (1988) J. Evol. Biol. , vol.1 , pp. 15-26
    • Bulmer, M.1
  • 4
    • 0028066160 scopus 로고
    • Genetic exchange and evolutionary divergence in prokaryotes
    • COHAN, F. M. 1994. Genetic exchange and evolutionary divergence in prokaryotes. TREE 9:175-180.
    • (1994) TREE , vol.9 , pp. 175-180
    • Cohan, F.M.1
  • 6
    • 0024077312 scopus 로고
    • Genetic exchange among natural isolates of bacteria: Recombination within the phoA gene of Escherichia coli
    • DU BOSE, R. F., D. E. DYKHUIZEN, and D. L. HARTL. 1988. Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli. Proc. Natl. Acad. Sci. USA 85:7036-7040.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 7036-7040
    • Du Bose, R.F.1    Dykhuizen, D.E.2    Hartl, D.L.3
  • 7
    • 0025788069 scopus 로고
    • Recombination in Escherichia coli and the definition of biological species
    • DYKHUIZEN, D. S., and L. GREEN. 1991. Recombination in Escherichia coli and the definition of biological species. J. Bacteriol. 173:7257-7268.
    • (1991) J. Bacteriol. , vol.173 , pp. 7257-7268
    • Dykhuizen, D.S.1    Green, L.2
  • 9
    • 0031041347 scopus 로고    scopus 로고
    • A likelihood method for the detection of selection and recombination using nucleotide sequences
    • GRASSLY, N. C., and E. C. HOLMES. 1997. A likelihood method for the detection of selection and recombination using nucleotide sequences. Mol Biol. Evol. 14:239-247.
    • (1997) Mol Biol. Evol. , vol.14 , pp. 239-247
    • Grassly, N.C.1    Holmes, E.C.2
  • 10
    • 0031436694 scopus 로고    scopus 로고
    • Recombination and clonality in natural populations of Escherichia coli
    • GUTTMAN, D. S. 1997. Recombination and clonality in natural populations of Escherichia coli. TREE 12:16-21.
    • (1997) TREE , vol.12 , pp. 16-21
    • Guttman, D.S.1
  • 11
    • 0028605344 scopus 로고
    • Clonal divergence in Escherichia coli as a result of recombination, not mutation
    • GUTTMAN, D. S., and D. E. DYKHUIZEN. 1994. Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266:1380-1383.
    • (1994) Science , vol.266 , pp. 1380-1383
    • Guttman, D.S.1    Dykhuizen, D.E.2
  • 12
    • 0022211482 scopus 로고
    • Statistical properties in the number of recombination events in the history of a sample of DNA sequences
    • HUDSON, R. R., and N. L. KAPLAN. 1985. Statistical properties in the number of recombination events in the history of a sample of DNA sequences. Genetics 111:147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 14
    • 0000896629 scopus 로고
    • Some problems of stochastic processes in genetics
    • KIMURA, M. 1957. Some problems of stochastic processes in genetics. Ann. Math. Stat. 28:882-901.
    • (1957) Ann. Math. Stat. , vol.28 , pp. 882-901
    • Kimura, M.1
  • 15
    • 0020560127 scopus 로고
    • Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster
    • KREITMAN, M. 1983. Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster. Nature 304:412-417.
    • (1983) Nature , vol.304 , pp. 412-417
    • Kreitman, M.1
  • 17
    • 0028785476 scopus 로고
    • Evidence for lateral transfer and recombination in OspC variation in Lyme disease Borrelia
    • LIVEY, I., C. P. GIBBS, R. SCHUSTER, and F. DORNER. 1995. Evidence for lateral transfer and recombination in OspC variation in Lyme disease Borrelia. Mol. Microbiol. 18: 257-269.
    • (1995) Mol. Microbiol. , vol.18 , pp. 257-269
    • Livey, I.1    Gibbs, C.P.2    Schuster, R.3    Dorner, F.4
  • 18
    • 0027506680 scopus 로고
    • Complete nucleotide sequence of the Salmonella typhimurium gene encoding malate dehydrogenase
    • LU, C.-D., and A. H. T. ABDELAL. 1993. Complete nucleotide sequence of the Salmonella typhimurium gene encoding malate dehydrogenase. Gene 123:143-144.
    • (1993) Gene , vol.123 , pp. 143-144
    • Lu, C.-D.1    Abdelal, A.H.T.2
  • 19
    • 0028878158 scopus 로고
    • Transduction, restriction and recombination patterns in Escherichia coli
    • MCKANE, M., and R. MILKMAN. 1995. Transduction, restriction and recombination patterns in Escherichia coli. Genetics 139:35-43.
    • (1995) Genetics , vol.139 , pp. 35-43
    • Mckane, M.1    Milkman, R.2
  • 20
    • 0026708873 scopus 로고
    • Analysing the mosaic structure of genes
    • MAYNARD SMITH, J. 1992. Analysing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Maynard Smith, J.1
  • 21
    • 0028042829 scopus 로고
    • Estimating the minimum rate of genetic transformation in bacteria
    • _. 1994. Estimating the minimum rate of genetic transformation in bacteria. J. Evol. Biol. 7:525-534.
    • (1994) J. Evol. Biol. , vol.7 , pp. 525-534
  • 22
    • 15844423271 scopus 로고    scopus 로고
    • Site-specific codon bias in bacteria
    • MAYNARD SMITH, J., and N. H. SMITH. 1996. Site-specific codon bias in bacteria. Genetics 142:1037-1043.
    • (1996) Genetics , vol.142 , pp. 1037-1043
    • Maynard Smith, J.1    Smith, N.H.2
  • 24
    • 0020510146 scopus 로고
    • Clustered third-base substitutions among wild strains of Escherichia coli
    • MILKMAN, R., and I. P. CRAWFORD. 1983. Clustered third-base substitutions among wild strains of Escherichia coli. Science 221:378-380.
    • (1983) Science , vol.221 , pp. 378-380
    • Milkman, R.1    Crawford, I.P.2
  • 25
    • 0026728291 scopus 로고
    • Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli
    • NELSON, K., and R. K. SELANDER. 1992. Evolutionary genetics of the proline permease gene (putP) and the control region of the proline utilization operon in populations of Salmonella and Escherichia coli. J. Bacteriol. 174:6886-6895.
    • (1992) J. Bacteriol. , vol.174 , pp. 6886-6895
    • Nelson, K.1    Selander, R.K.2
  • 26
    • 0028847883 scopus 로고
    • Expression of the flagellin gene in Borrelia is controlled by an alternative sigma factor
    • NOPPA, L., N. BURMAN, A. SADZIENE, A. G. BARBOUR, and S. BERGSTROM. 1995. Expression of the flagellin gene in Borrelia is controlled by an alternative sigma factor. Microbiology 141:85-93.
    • (1995) Microbiology , vol.141 , pp. 85-93
    • Noppa, L.1    Burman, N.2    Sadziene, A.3    Barbour, A.G.4    Bergstrom, S.5
  • 27
    • 0027278850 scopus 로고
    • The effect of DNA sequence divergence on sexual isolation in Bacillus
    • ROBERTS, M. S., and F. M. COHAN. 1993. The effect of DNA sequence divergence on sexual isolation in Bacillus. Genetics 134:401-408.
    • (1993) Genetics , vol.134 , pp. 401-408
    • Roberts, M.S.1    Cohan, F.M.2
  • 28
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • SAWYER, S. A. 1989. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6:526-538.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 526-538
    • Sawyer, S.A.1
  • 29
    • 0002786473 scopus 로고
    • The Population genetics of the pathogenic Neisseria
    • S. BAUMBERG, J. P. W. YOUNG, E. M. H. WELLINGTON, and J. R. SAUNDERS, eds. The population genetics of bacteria. Cambridge University Press, Cambridge, England
    • SPRATT, B. G., N. H. SMITH, J. ZHOU, M. O'ROURKE, and E. FEIL. 1995. The Population genetics of the pathogenic Neisseria. Pp. 143-160 in S. BAUMBERG, J. P. W. YOUNG, E. M. H. WELLINGTON, and J. R. SAUNDERS, eds. The population genetics of bacteria. SGM Symposium No. 52. Cambridge University Press, Cambridge, England.
    • (1995) SGM Symposium No. 52 , pp. 143-160
    • Spratt, B.G.1    Smith, N.H.2    Zhou, J.3    O'Rourke, M.4    Feil, E.5
  • 30
    • 0022410317 scopus 로고
    • Statistical methods of DNA sequence analysis: Detection of intragenic recombination or gene conversion
    • STEPHENS, J. 1985. Statistical methods of DNA sequence analysis: detection of intragenic recombination or gene conversion. Mol. Biol. Evol. 2:539-556.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 539-556
    • Stephens, J.1
  • 31
    • 0024100897 scopus 로고
    • Molecular evolution of the Escherichia coli chromosome II. Clonal segments
    • STOLTZFUS, A., and R. MILKMAN. 1988. Molecular evolution of the Escherichia coli chromosome II. Clonal segments. Genetics 120:359-366.
    • (1988) Genetics , vol.120 , pp. 359-366
    • Stoltzfus, A.1    Milkman, R.2
  • 32
    • 0014318183 scopus 로고
    • The stability of linked systems of loci with a small population size
    • SVED, J. A. 1968. The stability of linked systems of loci with a small population size. Genetics 59:543-563.
    • (1968) Genetics , vol.59 , pp. 543-563
    • Sved, J.A.1
  • 34
    • 0020558165 scopus 로고
    • Multilocus genetic structure in natural populations of Escherichia coli
    • WHITTAM, T. S., H. OCHMAN, and R. K. SELANDER. 1983. Multilocus genetic structure in natural populations of Escherichia coli. Proc. Natl. Acad. Sci. USA 80:1751-1755.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 1751-1755
    • Whittam, T.S.1    Ochman, H.2    Selander, R.K.3
  • 35
    • 0026644652 scopus 로고
    • Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: Interspecies recombination within the argF gene
    • ZHOU, J., and B. G. SPRATT. 1992. Sequence diversity within the argF, fbp and recA genes of natural isolates of Neisseria meningitidis: interspecies recombination within the argF gene. Mol. Microbiol. 6:2135-2146.
    • (1992) Mol. Microbiol. , vol.6 , pp. 2135-2146
    • Zhou, J.1    Spratt, B.G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.