메뉴 건너뛰기




Volumn 33, Issue 1, 1998, Pages 88-96

Dictionary of recurrent domains in protein structures

Author keywords

Dali; Fold classification; Protein families; Structural similarity; Substructures

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CONFORMATIONAL TRANSITION; EVOLUTION; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; STRUCTURE ANALYSIS;

EID: 0032189646     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19981001)33:1<88::AID-PROT8>3.0.CO;2-H     Document Type: Article
Times cited : (155)

References (27)
  • 1
    • 0015597839 scopus 로고
    • Nucleation, rapid folding, and globular intrachain regions in proteins
    • Wetlaufer, D.B. Nucleation, rapid folding, and globular intrachain regions in proteins. Proc. Natl. Acad. Sci. USA 70:697-701, 1973.
    • (1973) Proc. Natl. Acad. Sci. USA , vol.70 , pp. 697-701
    • Wetlaufer, D.B.1
  • 2
    • 0001183058 scopus 로고
    • Mobile modules and motifs
    • Bork, P. Mobile modules and motifs. Curr. Opin. Struct. Biol. 2:413-421, 1992.
    • (1992) Curr. Opin. Struct. Biol. , vol.2 , pp. 413-421
    • Bork, P.1
  • 4
    • 0026698924 scopus 로고
    • Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides
    • Waksman, G., Kominos, D., Robertson, S.C., et al. Crystal structure of the phosphotyrosine recognition domain SH2 of v-src complexed with tyrosine-phosphorylated peptides. Nature 358:646-653, 1992.
    • (1992) Nature , vol.358 , pp. 646-653
    • Waksman, G.1    Kominos, D.2    Robertson, S.C.3
  • 5
    • 0028891784 scopus 로고
    • Identification and analysis of domains in proteins
    • Islam, S.A., Luo, J., Sternberg, M.J. Identification and analysis of domains in proteins. Protein Eng. 8:513-525, 1995.
    • (1995) Protein Eng. , vol.8 , pp. 513-525
    • Islam, S.A.1    Luo, J.2    Sternberg, M.J.3
  • 6
    • 0028943588 scopus 로고
    • Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions
    • Siddiqui, A.S., Barton, G.J. Continuous and discontinuous domains: An algorithm for the automatic generation of reliable protein domain definitions. Protein Sci. 4:872-884, 1995.
    • (1995) Protein Sci. , vol.4 , pp. 872-884
    • Siddiqui, A.S.1    Barton, G.J.2
  • 7
    • 0030348027 scopus 로고    scopus 로고
    • A database of globular protein structural domains: Clustering of representative family members into similar folds
    • Sowdhamini, R., Rufino, S.D., Blundell, T.L. A database of globular protein structural domains: Clustering of representative family members into similar folds. Fold. Des. 1:209-220, 1996.
    • (1996) Fold. Des. , vol.1 , pp. 209-220
    • Sowdhamini, R.1    Rufino, S.D.2    Blundell, T.L.3
  • 8
    • 0028937153 scopus 로고
    • A procedure for detecting structural domains in proteins
    • Swindells, M.B. A procedure for detecting structural domains in proteins. Protein Sci. 4:103-112, 1995.
    • (1995) Protein Sci. , vol.4 , pp. 103-112
    • Swindells, M.B.1
  • 9
    • 0028290005 scopus 로고
    • Parser for protein folding units
    • Holm, L., Sander, C. Parser for protein folding units. Proteins 19:256-268, 1994.
    • (1994) Proteins , vol.19 , pp. 256-268
    • Holm, L.1    Sander, C.2
  • 10
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson, J.S. The anatomy and taxonomy of protein structure. Adv. Protein Chem. 34:167-339, 1981.
    • (1981) Adv. Protein Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 11
    • 0026030641 scopus 로고
    • Homology-derived secondary structure of proteins and the structural meaning of sequence homology
    • Sander, C., Schneider, R. Homology-derived secondary structure of proteins and the structural meaning of sequence homology. Proteins 9:56-68, 1991.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 12
    • 0031576355 scopus 로고    scopus 로고
    • Do aligned sequences share the same fold?
    • Abagyan, R.A., Batalov, S. Do aligned sequences share the same fold? J. Mol. Biol. 273:355-368, 1997.
    • (1997) J. Mol. Biol. , vol.273 , pp. 355-368
    • Abagyan, R.A.1    Batalov, S.2
  • 13
    • 0032568596 scopus 로고    scopus 로고
    • Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
    • Brenner, S.E., Chothia, C., Hubbard, TJ (1998) Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. Proc Natl Acad Sci USA 95, 6073-6078.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6073-6078
    • Brenner, S.E.1    Chothia, C.2    Hubbard, T.J.3
  • 14
    • 0030724017 scopus 로고    scopus 로고
    • Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium
    • Fischer, D., Eisenberg, D. Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium. Proc. Natl. Acad. Sci. USA 94:11929-11934, 1997.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 11929-11934
    • Fischer, D.1    Eisenberg, D.2
  • 15
    • 0027092678 scopus 로고
    • Selection of a representative set of structures from the Brookhaven Protein Data Bank
    • Hobohm, U., Scharf, M., Schneider, R., Sander, C. Selection of a representative set of structures from the Brookhaven Protein Data Bank. Protein Sci. 1:409-117, 1992.
    • (1992) Protein Sci. , vol.1 , pp. 409-1117
    • Hobohm, U.1    Scharf, M.2    Schneider, R.3    Sander, C.4
  • 16
    • 0017411710 scopus 로고
    • The protein data bank: A computer-based archival file for macromolecular structures
    • Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., et al. The protein data bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
    • (1977) J. Mol. Biol. , vol.112 , pp. 535-542
    • Bernstein, F.C.1    Koetzle, T.F.2    Williams, G.J.B.3
  • 17
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm, L., Sander, C. Protein structure comparison by alignment of distance matrices. J. Mol. Biol. 233:123-138, 1993.
    • (1993) J. Mol. Biol. , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 18
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm, L., Sander, C. Mapping the protein universe. Science 273:595-602, 1996.
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 19
    • 0029934469 scopus 로고    scopus 로고
    • Alignment of three-dimensional protein structures
    • Holm, L., Sander, C. Alignment of three-dimensional protein structures. Methods Enzymol. 266:653-662, 1996.
    • (1996) Methods Enzymol. , vol.266 , pp. 653-662
    • Holm, L.1    Sander, C.2
  • 20
    • 0031865006 scopus 로고    scopus 로고
    • Touring protein fold space with Dali/FSSP
    • Holm, L., Sander, C. Touring protein fold space with Dali/FSSP. Nucleic Acids Res. 26:316-319, 1998.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 316-319
    • Holm, L.1    Sander, C.2
  • 21
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A.G., Brenner, S.E., Hubbard, T., Chothia, C. SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:536-540, 1995.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 24
    • 0026552246 scopus 로고
    • The crystal structure of diphtheria toxin
    • Bennett, M.J., Choe, S., Eisenberg, D. The crystal structure of diphtheria toxin. Nature 357:216-222, 1992.
    • (1992) Nature , vol.357 , pp. 216-222
    • Bennett, M.J.1    Choe, S.2    Eisenberg, D.3
  • 25
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950, 1991.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.1
  • 26
    • 0027231782 scopus 로고
    • Structure of DNA polymerase I Klenow fragment bound to duplex DNA
    • Beese, L.S., Derbyshire, V., Steitz, T.A. Structure of DNA polymerase I Klenow fragment bound to duplex DNA. Science 260:352-355, 1993.
    • (1993) Science , vol.260 , pp. 352-355
    • Beese, L.S.1    Derbyshire, V.2    Steitz, T.A.3
  • 27
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W., Sander, C. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1983.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.