-
1
-
-
34548801789
-
The molecular basis of eukaryotic transcription
-
Kornberg RD (2007) The molecular basis of eukaryotic transcription. Proc Natl Acad Sci USA 104:12955-12961.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12955-12961
-
-
Kornberg, R.D.1
-
2
-
-
0034724953
-
Architecture of RNA polymerase II and implications for the transcription mechanism
-
Cramer P, et al. (2000) Architecture of RNA polymerase II and implications for the transcription mechanism. Science 288:640-649.
-
(2000)
Science
, vol.288
, pp. 640-649
-
-
Cramer, P.1
-
3
-
-
0035827346
-
Structural basis of transcription: RNA polymerase II at 2.8 Å resolution
-
Cramer P, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: RNA polymerase II at 2.8 Å resolution. Science 292:1863-1876.
-
(2001)
Science
, vol.292
, pp. 1863-1876
-
-
Cramer, P.1
Bushnell, D.A.2
Kornberg, R.D.3
-
4
-
-
0035827332
-
Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution
-
Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 Å resolution. Science 292:1876-1882.
-
(2001)
Science
, vol.292
, pp. 1876-1882
-
-
Gnatt, A.L.1
Cramer, P.2
Fu, J.3
Bushnell, D.A.4
Kornberg, R.D.5
-
5
-
-
1142310578
-
Structural basis of transcription: Separation of RNA from DNA by RNA polymerase II
-
Westover KD, Bushnell DA, Kornberg RD (2004) Structural basis of transcription: Separation of RNA from DNA by RNA polymerase II. Science 303:1014-1016.
-
(2004)
Science
, vol.303
, pp. 1014-1016
-
-
Westover, K.D.1
Bushnell, D.A.2
Kornberg, R.D.3
-
6
-
-
0037832543
-
Complete, 12-subunit RNA polymerase II at 4.1- Å resolution: Implications for the initiation of transcription
-
Bushnell DA, Kornberg RD (2003) Complete, 12-subunit RNA polymerase II at 4.1- Å resolution: Implications for the initiation of transcription. Proc Natl Acad Sci USA 100:6969-6973.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6969-6973
-
-
Bushnell, D.A.1
Kornberg, R.D.2
-
7
-
-
0036690340
-
Structure of yeast RNA polymerase II in solution: Implications for enzyme regulation and interaction with promoter DNA
-
Craighead JL, Chang WH, Asturias FJ (2002) Structure of yeast RNA polymerase II in solution: Implications for enzyme regulation and interaction with promoter DNA. Structure 10:1117-1125.
-
(2002)
Structure
, vol.10
, pp. 1117-1125
-
-
Craighead, J.L.1
Chang, W.H.2
Asturias, F.J.3
-
8
-
-
30044431985
-
RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit
-
Ujvari A, Luse DS (2006) RNA emerging from the active site of RNA polymerase II interacts with the Rpb7 subunit. Nat Struct Mol Biol 13:49-54.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 49-54
-
-
Ujvari, A.1
Luse, D.S.2
-
9
-
-
0025962218
-
Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro
-
Edwards AM, Kane CM, Young RA, Kornberg RD (1991) Two dissociable subunits of yeast RNA polymerase II stimulate the initiation of transcription at a promoter in vitro. J Biol Chem 266:71-75.
-
(1991)
J Biol Chem
, vol.266
, pp. 71-75
-
-
Edwards, A.M.1
Kane, C.M.2
Young, R.A.3
Kornberg, R.D.4
-
10
-
-
10944232674
-
Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
-
Kettenberger H, Armache KJ, Cramer P (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 16:955-965.
-
(2004)
Mol Cell
, vol.16
, pp. 955-965
-
-
Kettenberger, H.1
Armache, K.J.2
Cramer, P.3
-
12
-
-
0035312659
-
Recent advances in FRET: Distance determination in protein-DNA complexes
-
Hillisch A, Lorenz M, Diekmann S (2001) Recent advances in FRET: Distance determination in protein-DNA complexes. Curr Opin Struct Biol 11:201-207.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 201-207
-
-
Hillisch, A.1
Lorenz, M.2
Diekmann, S.3
-
13
-
-
0034802493
-
The bright future of fluorescence
-
Kerppola TK (2001) The bright future of fluorescence. Methods 25:1-3.
-
(2001)
Methods
, vol.25
, pp. 1-3
-
-
Kerppola, T.K.1
-
14
-
-
0034802564
-
Gel-based fluorescence resonance energy transfer (gelFRET) analysis of nucleoprotein complex architecture
-
Ramirez-Carrozzi V, Kerppola T (2001) Gel-based fluorescence resonance energy transfer (gelFRET) analysis of nucleoprotein complex architecture. Methods 25:31-43.
-
(2001)
Methods
, vol.25
, pp. 31-43
-
-
Ramirez-Carrozzi, V.1
Kerppola, T.2
-
15
-
-
33751212468
-
Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
-
Kapanidis AN, et al. (2006) Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science 314:1144-1147.
-
(2006)
Science
, vol.314
, pp. 1144-1147
-
-
Kapanidis, A.N.1
-
16
-
-
33645765585
-
Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes
-
Margeat E, et al. (2006) Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes. Biophys J 90:1419-1431.
-
(2006)
Biophys J
, vol.90
, pp. 1419-1431
-
-
Margeat, E.1
-
17
-
-
27644579628
-
Retention of transcription initiation factor σ70 in transcription elongation: Single-molecule analysis
-
Kapanidis AN, et al. (2005) Retention of transcription initiation factor σ70 in transcription elongation: Single-molecule analysis. Mol Cell 20:347-356.
-
(2005)
Mol Cell
, vol.20
, pp. 347-356
-
-
Kapanidis, A.N.1
-
18
-
-
0034625251
-
Structural organization of the RNA polymerase-promoter open complex
-
Naryshkin N, Revyakin A, Kim Y, Mekler V, Ebright RH (2000) Structural organization of the RNA polymerase-promoter open complex. Cell 101:601-611.
-
(2000)
Cell
, vol.101
, pp. 601-611
-
-
Naryshkin, N.1
Revyakin, A.2
Kim, Y.3
Mekler, V.4
Ebright, R.H.5
-
19
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
Rigaut G, et al. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17:1030-1032.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 1030-1032
-
-
Rigaut, G.1
-
20
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
Puig O, et al. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods 24:218-229.
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
-
21
-
-
0033813064
-
Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
-
Weiss S (2000) Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy. Nat Struct Biol 7:724-729.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 724-729
-
-
Weiss, S.1
-
22
-
-
0034807927
-
Single-molecule fluorescence resonance energy transfer
-
Ha T (2001) Single-molecule fluorescence resonance energy transfer. Methods 25:78-86.
-
(2001)
Methods
, vol.25
, pp. 78-86
-
-
Ha, T.1
-
23
-
-
22244442162
-
Telomerase can act as a template- and RNA-independent terminal transferase
-
Lue NF, et al. (2005) Telomerase can act as a template- and RNA-independent terminal transferase. Proc Natl Acad Sci USA 102:9778-9783.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9778-9783
-
-
Lue, N.F.1
-
24
-
-
0028196677
-
Interplay of positive and negative effectors in function of the C-terminal repeat domain of RNA polymerase II
-
Li Y, Kornberg RD (1994) Interplay of positive and negative effectors in function of the C-terminal repeat domain of RNA polymerase II. Proc Natl Acad Sci USA 91:2362-2366.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 2362-2366
-
-
Li, Y.1
Kornberg, R.D.2
-
25
-
-
0026664855
-
Cloning of a subunit of yeast RNA polymerase II transcription factor b and CTD kinase
-
Gileadi O, Feaver WJ, Kornberg RD (1992) Cloning of a subunit of yeast RNA polymerase II transcription factor b and CTD kinase. Science 257:1389-1392.
-
(1992)
Science
, vol.257
, pp. 1389-1392
-
-
Gileadi, O.1
Feaver, W.J.2
Kornberg, R.D.3
-
26
-
-
0026348276
-
CTD kinase associated with yeast RNA polymerase II initiation factor b
-
Feaver WJ, Gileadi O, Li Y, Kornberg RD (1991) CTD kinase associated with yeast RNA polymerase II initiation factor b. Cell 67:1223-1230.
-
(1991)
Cell
, vol.67
, pp. 1223-1230
-
-
Feaver, W.J.1
Gileadi, O.2
Li, Y.3
Kornberg, R.D.4
-
27
-
-
0034732989
-
Location of cyanine-3 on double-stranded DNA: Importance for fluorescence resonance energy transfer studies
-
Norman DG, Grainger RJ, Uhrin D, Lilley DM (2000) Location of cyanine-3 on double-stranded DNA: Importance for fluorescence resonance energy transfer studies. Biochemistry 39:6317-6324.
-
(2000)
Biochemistry
, vol.39
, pp. 6317-6324
-
-
Norman, D.G.1
Grainger, R.J.2
Uhrin, D.3
Lilley, D.M.4
-
28
-
-
48249085467
-
Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids
-
Iqbal A, et al. (2008) Orientation dependence in fluorescent energy transfer between Cy3 and Cy5 terminally attached to double-stranded nucleic acids. Proc Natl Acad Sci USA 105:11176-11181.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11176-11181
-
-
Iqbal, A.1
-
29
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng S, Joo C, Ha T (2004) Single-molecule three-color FRET. Biophys J 87:1328-1337.
-
(2004)
Biophys J
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
30
-
-
0032541021
-
Spatial organization of transcription elongation complex in Escherichia coli
-
Nudler E, Gusarov I, Avetissova E, Kozlov M, Goldfarb A (1998) Spatial organization of transcription elongation complex in Escherichia coli. Science 281:424-428.
-
(1998)
Science
, vol.281
, pp. 424-428
-
-
Nudler, E.1
Gusarov, I.2
Avetissova, E.3
Kozlov, M.4
Goldfarb, A.5
-
31
-
-
1142274214
-
Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Å
-
Bushnell DA, Westover KD, Davis RE, Kornberg RD (2004) Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Å. Science 303:983-988.
-
(2004)
Science
, vol.303
, pp. 983-988
-
-
Bushnell, D.A.1
Westover, K.D.2
Davis, R.E.3
Kornberg, R.D.4
-
32
-
-
5444275331
-
Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: Amodel for the structure of the PIC
-
Chen HT, Hahn S (2004) Mapping the location of TFIIB within the RNA polymerase II transcription preinitiation complex: Amodel for the structure of the PIC. Cell 119:169-180.
-
(2004)
Cell
, vol.119
, pp. 169-180
-
-
Chen, H.T.1
Hahn, S.2
-
33
-
-
0141992120
-
Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex
-
Chen HT, Hahn S (2003) Binding of TFIIB to RNA polymerase II: Mapping the binding site for the TFIIB zinc ribbon domain within the preinitiation complex. Mol Cell 12:437-447.
-
(2003)
Mol Cell
, vol.12
, pp. 437-447
-
-
Chen, H.T.1
Hahn, S.2
-
34
-
-
34547683177
-
The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex
-
Chen HT, Warfield L, Hahn S (2007) The positions of TFIIF and TFIIE in the RNA polymerase II transcription preinitiation complex. Nat Struct Mol Biol 14:696-703.
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 696-703
-
-
Chen, H.T.1
Warfield, L.2
Hahn, S.3
-
35
-
-
0037123602
-
Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex
-
Murakami KS, Masuda S, Campbell EA, Muzzin O, Darst SA (2002) Structural basis of transcription initiation: An RNA polymerase holoenzyme-DNA complex. Science 296:1285-1290.
-
(2002)
Science
, vol.296
, pp. 1285-1290
-
-
Murakami, K.S.1
Masuda, S.2
Campbell, E.A.3
Muzzin, O.4
Darst, S.A.5
-
36
-
-
34447499995
-
Structural basis for transcription elongation by bacterial RNA polymerase
-
Vassylyev DG, Vassylyeva MN, Perederina A, Tahirov TH, Artsimovitch I (2007) Structural basis for transcription elongation by bacterial RNA polymerase. Nature 448:157-162.
-
(2007)
Nature
, vol.448
, pp. 157-162
-
-
Vassylyev, D.G.1
Vassylyeva, M.N.2
Perederina, A.3
Tahirov, T.H.4
Artsimovitch, I.5
-
37
-
-
0037154967
-
Integrating mRNA processing with transcription
-
Proudfoot NJ, Furger A, Dye MJ (2002) Integrating mRNA processing with transcription. Cell 108:501-512.
-
(2002)
Cell
, vol.108
, pp. 501-512
-
-
Proudfoot, N.J.1
Furger, A.2
Dye, M.J.3
-
38
-
-
38349173560
-
Single-molecule tracking of mRNA exiting from RNA polymerase II
-
Andrecka J, et al. (2008) Single-molecule tracking of mRNA exiting from RNA polymerase II. Proc Natl Acad Sci USA 105:135-140.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 135-140
-
-
Andrecka, J.1
-
39
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
Liphardt J, Onoa B, Smith SB, Tinoco IJ, Bustamante C (2001) Reversible unfolding of single RNA molecules by mechanical force. Science 292:733-737.
-
(2001)
Science
, vol.292
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Tinoco, I.J.4
Bustamante, C.5
-
40
-
-
22144455993
-
Single-molecule measurements of the persistence length of double-stranded RNA
-
Abels JA, Moreno-Herrero F, van der Heijden T, Dekker C, Dekker NH (2005) Single-molecule measurements of the persistence length of double-stranded RNA. Biophys J 88:2737-2744.
-
(2005)
Biophys J
, vol.88
, pp. 2737-2744
-
-
Abels, J.A.1
Moreno-Herrero, F.2
van der Heijden, T.3
Dekker, C.4
Dekker, N.H.5
-
41
-
-
0029055758
-
Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II
-
Gu W, Reines D (1995) Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II. J Biol Chem 270:11238-11244.
-
(1995)
J Biol Chem
, vol.270
, pp. 11238-11244
-
-
Gu, W.1
Reines, D.2
-
42
-
-
0037006790
-
2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules
-
2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules. Proc Natl Acad Sci USA 99:4284-4289.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4284-4289
-
-
Kim, H.D.1
-
43
-
-
0242266617
-
RNA polymerase II/TFIIF structure and conserved organization of the initiation complex
-
Chung WH, et al. (2003) RNA polymerase II/TFIIF structure and conserved organization of the initiation complex. Mol Cell 12:1003-1013.
-
(2003)
Mol Cell
, vol.12
, pp. 1003-1013
-
-
Chung, W.H.1
-
44
-
-
0030221376
-
A novel collection of accessory factors associated with yeast RNA polymerase II
-
Wade PA, et al. (1996) A novel collection of accessory factors associated with yeast RNA polymerase II. Protein Expr Purif 8:85-90.
-
(1996)
Protein Expr Purif
, vol.8
, pp. 85-90
-
-
Wade, P.A.1
-
46
-
-
13444292841
-
Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time
-
Churchman LS, Okten Z, Rock RS, Dawson JF, Spudich JA (2005) Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time. Proc Natl Acad Sci USA 102:1419-1423.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 1419-1423
-
-
Churchman, L.S.1
Okten, Z.2
Rock, R.S.3
Dawson, J.F.4
Spudich, J.A.5
-
47
-
-
15244360525
-
Architecture of recombination intermediates visualized by in-gel FRET of λ integrase-Holliday junction-arm DNA complexes
-
Radman-Livaja M, Biswas T, Mierke D, Landy A (2005) Architecture of recombination intermediates visualized by in-gel FRET of λ integrase-Holliday junction-arm DNA complexes. Proc Natl Acad Sci USA 102:3913-3920.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 3913-3920
-
-
Radman-Livaja, M.1
Biswas, T.2
Mierke, D.3
Landy, A.4
-
48
-
-
0033529972
-
Ligand-induced conformational changes observed in single RNA molecules
-
Ha T, et al. (1999) Ligand-induced conformational changes observed in single RNA molecules. Proc Natl Acad Sci USA 96:9077-9082.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9077-9082
-
-
Ha, T.1
-
49
-
-
33750295496
-
Nonblinking and long-lasting single-molecule fluorescence imaging
-
Rasnik I, McKinney SA, Ha T (2006) Nonblinking and long-lasting single-molecule fluorescence imaging. Nat Methods 3:891-893.
-
(2006)
Nat Methods
, vol.3
, pp. 891-893
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
51
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47:110-119.
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
|