-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
RI Amann W Ludwig KH Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0033960446
-
Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes
-
10.1128/AEM.66.2.467-475.2000
-
HY Dang CR Lovell 2000 Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes Appl Environ Microbiol 66 467 475 10.1128/AEM.66.2.467-475.2000
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 467-475
-
-
Dang, H.Y.1
Lovell, C.R.2
-
4
-
-
33750454133
-
Molecular characterizations of oxytetracycline resistant bacteria and their resistance genes in mariculture waters of China
-
10.1016/j.marpolbul.2006.05.011
-
HY Dang XX Zhang LS Song YQ Chang GP Yang 2006 Molecular characterizations of oxytetracycline resistant bacteria and their resistance genes in mariculture waters of China Mar Pollut Bull 52 1494 1503 10.1016/j.marpolbul.2006.05.011
-
(2006)
Mar Pollut Bull
, vol.52
, pp. 1494-1503
-
-
Dang, H.Y.1
Zhang, X.X.2
Song, L.S.3
Chang, Y.Q.4
Yang, G.P.5
-
5
-
-
25844519572
-
Extracellular DNA plays a key role in deep-sea ecosystem functioning
-
10.1126/science.1117475
-
A Dell'Anno R Danovaro 2005 Extracellular DNA plays a key role in deep-sea ecosystem functioning Science 309 2179 10.1126/science.1117475
-
(2005)
Science
, vol.309
, pp. 2179
-
-
Dell'Anno, A.1
Danovaro, R.2
-
6
-
-
0030989775
-
Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria
-
EF DeLong DG Franks AA Yayanos 1997 Evolutionary relationships of cultivated psychrophilic and barophilic deep-sea bacteria Appl Environ Microbiol 63 2105 2108
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2105-2108
-
-
Delong, E.F.1
Franks, D.G.2
Yayanos, A.A.3
-
7
-
-
0037978976
-
Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype enteritidis in poultry
-
10.1128/AEM.69.6.3456-3461.2003
-
D De Medici L Croci E Delibato S Di Pasquale E Filetici L Toti 2003 Evaluation of DNA extraction methods for use in combination with SYBR green I real-time PCR to detect Salmonella enterica serotype enteritidis in poultry Appl Environ Microbiol 69 3456 3461 10.1128/AEM.69.6.3456-3461.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3456-3461
-
-
De Medici, D.1
Croci, L.2
Delibato, E.3
Di Pasquale, S.4
Filetici, E.5
Toti, L.6
-
8
-
-
0035313249
-
Enzymes from extremophiles
-
10.1016/S1367-5931(00)00183-6
-
DC Demirjian 2001 Enzymes from extremophiles Curr Opin Chem Biol 5 144 151 10.1016/S1367-5931(00)00183-6
-
(2001)
Curr Opin Chem Biol
, vol.5
, pp. 144-151
-
-
Demirjian, D.C.1
-
9
-
-
0037086196
-
Metabolic activity of subsurface life in deep-sea sediments
-
10.1126/science.1064878
-
S D'Hondt S Rutherford AJ Spivack 2002 Metabolic activity of subsurface life in deep-sea sediments Science 295 2067 2070 10.1126/science.1064878
-
(2002)
Science
, vol.295
, pp. 2067-2070
-
-
D'Hondt, S.1
Rutherford, S.2
Spivack, A.J.3
-
10
-
-
0000122573
-
PHYLIP-Phylogeny Inference Package (Version 3.2)
-
J Felsenstein 1989 PHYLIP-Phylogeny Inference Package (Version 3.2) Cladistics 5 164 166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
11
-
-
0034159939
-
Cold-adapted enzymes: From fundamentals to biotechnology
-
10.1016/S0167-7799(99)01413-4
-
C Gerday M Aittaleb M Bentahir JP Chessa P Claverie T Collins S D'Amico J Dumont G Garsoux D Georlette A Hoyoux T Lonhienne MA Meuwis G Feller 2000 Cold-adapted enzymes: from fundamentals to biotechnology Trends Biotechnol 18 103 107 10.1016/S0167-7799(99)01413-4
-
(2000)
Trends Biotechnol
, vol.18
, pp. 103-107
-
-
Gerday, C.1
Aittaleb, M.2
Bentahir, M.3
Chessa, J.P.4
Claverie, P.5
Collins, T.6
D'Amico, S.7
Dumont, J.8
Garsoux, G.9
Georlette, D.10
Hoyoux, A.11
Lonhienne, T.12
Meuwis, M.A.13
Feller, G.14
-
12
-
-
0142230526
-
Submarine hydrothermal mineralization in the Okinawa Trough, SW of Japan: An overview
-
10.1016/j.oregeorev.2003.07.001
-
GP Glasby K Notsu 2003 Submarine hydrothermal mineralization in the Okinawa Trough, SW of Japan: an overview Ore Geol Rev 23 299 339 10.1016/j.oregeorev.2003.07.001
-
(2003)
Ore Geol Rev
, vol.23
, pp. 299-339
-
-
Glasby, G.P.1
Notsu, K.2
-
13
-
-
1642441679
-
Colloidal chitin stained with Remazol Brilliant Blue R, a useful substrate to select chitinolytic microorganisms and to evaluate chitinases
-
10.1016/j.mimet.2003.10.011
-
M Gómez Ramírez LI Rojas Avelizapa NG Rojas Avelizapa R Cruz Camarillo 2004 Colloidal chitin stained with Remazol Brilliant Blue R, a useful substrate to select chitinolytic microorganisms and to evaluate chitinases J Microbiol Methods 56 213 219 10.1016/j.mimet.2003.10.011
-
(2004)
J Microbiol Methods
, vol.56
, pp. 213-219
-
-
Gómez Ramírez, M.1
Rojas Avelizapa, L.I.2
Rojas Avelizapa, N.G.3
Cruz Camarillo, R.4
-
14
-
-
0346643721
-
Hydrothermal signatures in the southern Okinawa Trough detected by the sequential extraction of settling particles
-
10.1016/S0304-4203(03)00102-6
-
SC Hsu FJ Lin WL Jeng Y Chung LM Shaw 2003 Hydrothermal signatures in the southern Okinawa Trough detected by the sequential extraction of settling particles Mar Chem 84 49 66 10.1016/S0304-4203(03)00102-6
-
(2003)
Mar Chem
, vol.84
, pp. 49-66
-
-
Hsu, S.C.1
Lin, F.J.2
Jeng, W.L.3
Chung, Y.4
Shaw, L.M.5
-
15
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
-
10.1128/AEM.69.12.7224-7235.2003
-
F Inagaki M Suzuki K Takai H Oida T Sakamoto K Aoki KH Nealson K Horikoshi 2003 Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk Appl Environ Microbiol 69 7224 7235 10.1128/AEM.69.12.7224-7235.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
Oida, H.4
Sakamoto, T.5
Aoki, K.6
Nealson, K.H.7
Horikoshi, K.8
-
16
-
-
17344368992
-
Bacterial activity and their physiological characteristics in the sediments of ODP Holes 1202A and 1202D, Okinawa Trough, Western Pacific
-
JS Jean TY Chiang KY Wei WT Jiang CC Liu YP Tsai 2005 Bacterial activity and their physiological characteristics in the sediments of ODP Holes 1202A and 1202D, Okinawa Trough, Western Pacific Terr Atmos Ocean Sci 16 113 136
-
(2005)
Terr Atmos Ocean Sci
, vol.16
, pp. 113-136
-
-
Jean, J.S.1
Chiang, T.Y.2
Wei, K.Y.3
Jiang, W.T.4
Liu, C.C.5
Tsai, Y.P.6
-
17
-
-
28844478918
-
A comparison of sedimentary aliphatic hydrocarbon distribution between the southern Okinawa Trough and a nearby river with high sediment discharge
-
10.1016/j.ecss.2005.09.001
-
W Jeng C Huh 2006 A comparison of sedimentary aliphatic hydrocarbon distribution between the southern Okinawa Trough and a nearby river with high sediment discharge Estuar Coast Shelf Sci 66 217 224 10.1016/j.ecss.2005.09.001
-
(2006)
Estuar Coast Shelf Sci
, vol.66
, pp. 217-224
-
-
Jeng, W.1
Huh, C.2
-
18
-
-
0037266016
-
Organic carbon and nitrogen contents and their isotopic compositions in surficial sediments from the East China Sea shelf and the southern Okinawa Trough
-
10.1016/S0967-0645(03)00018-3
-
SJ Kao FJ Lin KK Liu 2003 Organic carbon and nitrogen contents and their isotopic compositions in surficial sediments from the East China Sea shelf and the southern Okinawa Trough Deep Sea Res Part II Top Stud Oceanogr 50 1203 1217 10.1016/S0967-0645(03)00018-3
-
(2003)
Deep Sea Res Part II Top Stud Oceanogr
, vol.50
, pp. 1203-1217
-
-
Kao, S.J.1
Lin, F.J.2
Liu, K.K.3
-
19
-
-
0030031591
-
Isolating and characterizing deep-sea marine microorganisms
-
10.1016/0167-7799(96)80907-3
-
C Kato A Inoue K Horikoshi 1996 Isolating and characterizing deep-sea marine microorganisms Trends Biotechnol 14 6 12 10.1016/0167-7799(96)80907-3
-
(1996)
Trends Biotechnol
, vol.14
, pp. 6-12
-
-
Kato, C.1
Inoue, A.2
Horikoshi, K.3
-
20
-
-
46149097400
-
Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula
-
10.1007/s00792-008-0157-7
-
T Kobayashi O Koide K Mori S Shimamura T Matsuura T Miura Y Takaki Y Morono T Nunoura H Imachi F Inagaki K Takai K Horikoshi 2008 Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula Extremophiles 12 519 527 10.1007/s00792-008-0157-7
-
(2008)
Extremophiles
, vol.12
, pp. 519-527
-
-
Kobayashi, T.1
Koide, O.2
Mori, K.3
Shimamura, S.4
Matsuura, T.5
Miura, T.6
Takaki, Y.7
Morono, Y.8
Nunoura, T.9
Imachi, H.10
Inagaki, F.11
Takai, K.12
Horikoshi, K.13
-
21
-
-
34548510888
-
Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments
-
KK Kwon SJ Yang HS Lee JC Cho SJ Kim 2007 Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments J Microbiol Biotechnol 17 1379 1384
-
(2007)
J Microbiol Biotechnol
, vol.17
, pp. 1379-1384
-
-
Kwon, K.K.1
Yang, S.J.2
Lee, H.S.3
Cho, J.C.4
Kim, S.J.5
-
22
-
-
7144257839
-
Virulence factors and pathogenicity of Vibrio vulnificus strains isolated from seafood
-
10.1046/j.1365-2672.1998.00404.x
-
ML Moreno M Landgraf 1998 Virulence factors and pathogenicity of Vibrio vulnificus strains isolated from seafood J Appl Microbiol 84 747 751 10.1046/j.1365-2672.1998.00404.x
-
(1998)
J Appl Microbiol
, vol.84
, pp. 747-751
-
-
Moreno, M.L.1
Landgraf, M.2
-
23
-
-
33747506138
-
Data report: Composition of pore water from Site 1202, southern Okinawa Trough
-
Shinohara M, Salisbury MH, Richter C (eds) Ocean Drilling Program, Texas A and M University, Available from
-
Mottl MJ (2005) Data report: composition of pore water from Site 1202, southern Okinawa Trough. In: Shinohara M, Salisbury MH, Richter C (eds) Proc ODP Sci Results, vol 195, pp 1-9. Ocean Drilling Program, Texas A and M University, Available from http://www-odp.tamu.edu/publications/
-
(2005)
Proc ODP Sci Results
, vol.195
, pp. 1-9
-
-
Mottl, M.J.1
-
24
-
-
0142020909
-
Decadal-scale variability in the Kuroshio marine ecosystem in winter
-
10.1046/j.1365-2419.2003.00249.x
-
K Nakata K Hidaka 2003 Decadal-scale variability in the Kuroshio marine ecosystem in winter Fish Oceanogr 12 234 244 10.1046/j.1365-2419.2003.00249.x
-
(2003)
Fish Oceanogr
, vol.12
, pp. 234-244
-
-
Nakata, K.1
Hidaka, K.2
-
25
-
-
0030850352
-
Prokaryotic diversity and the importance of culturing
-
10.1023/A:1000394109961
-
NJ Palleroni 1997 Prokaryotic diversity and the importance of culturing Antonie Van Leeuwenhoek 72 3 19 10.1023/A:1000394109961
-
(1997)
Antonie Van Leeuwenhoek
, vol.72
, pp. 3-19
-
-
Palleroni, N.J.1
-
26
-
-
22944465797
-
Deep sub-seafloor prokaryotes stimulated at interfaces over geological time
-
10.1038/nature03796
-
RJ Parkes G Webster BA Cragg AJ Weightman CJ Newberry TG Ferdelman J Kallmeyer BB Jorgensen IW Aiello JC Fry 2005 Deep sub-seafloor prokaryotes stimulated at interfaces over geological time Nature 436 390 394 10.1038/nature03796
-
(2005)
Nature
, vol.436
, pp. 390-394
-
-
Parkes, R.J.1
Webster, G.2
Cragg, B.A.3
Weightman, A.J.4
Newberry, C.J.5
Ferdelman, T.G.6
Kallmeyer, J.7
Jorgensen, B.B.8
Aiello, I.W.9
Fry, J.C.10
-
27
-
-
34247860963
-
Wangia profunda gen. nov, sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment
-
10.1111/j.1574-6968.2007.00694.x
-
QL Qin DL Zhao J Wang XL Chen HY Dang TG Li YZ Zhang PJ Gao 2007 Wangia profunda gen. nov, sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment FEMS Microbiol Lett 271 53 58 10.1111/j.1574-6968.2007.00694.x
-
(2007)
FEMS Microbiol Lett
, vol.271
, pp. 53-58
-
-
Qin, Q.L.1
Zhao, D.L.2
Wang, J.3
Chen, X.L.4
Dang, H.Y.5
Li, T.G.6
Zhang, Y.Z.7
Gao, P.J.8
-
29
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
N Saitou M Nei 1987 The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol Biol Evol 4 406 442
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-442
-
-
Saitou, N.1
Nei, M.2
-
30
-
-
0037241080
-
Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes
-
10.1046/j.1365-2672.2003.01834.x
-
C Sánchez-Porro S Martín E Mellado A Ventosa 2003 Diversity of moderately halophilic bacteria producing extracellular hydrolytic enzymes J Appl Microbiol 94 295 300 10.1046/j.1365-2672.2003.01834.x
-
(2003)
J Appl Microbiol
, vol.94
, pp. 295-300
-
-
Sánchez-Porro, C.1
Martín, S.2
Mellado, E.3
Ventosa, A.4
-
32
-
-
19144373707
-
Genomic studies of uncultivated archaea
-
10.1038/nrmicro1159
-
C Schleper G Jurgens M Jonuscheit 2005 Genomic studies of uncultivated archaea Nat Rev Microbiol 3 479 488 10.1038/nrmicro1159
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 479-488
-
-
Schleper, C.1
Jurgens, G.2
Jonuscheit, M.3
-
33
-
-
10344228215
-
Status of the microbial census
-
10.1128/MMBR.68.4.686-691.2004
-
PD Schloss J Handelsman 2004 Status of the microbial census Microbiol Mol Biol Rev 68 686 691 10.1128/MMBR.68.4.686-691.2004
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 686-691
-
-
Schloss, P.D.1
Handelsman, J.2
-
34
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
10.1128/AEM.71.3.1501-1506.2005
-
PD Schloss J Handelsman 2005 Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness Appl Environ Microbiol 71 1501 1506 10.1128/AEM.71.3.1501-1506.2005
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
35
-
-
16244420113
-
A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates
-
10.1016/j.syapm.2004.12.002
-
K Sfanos D Harmody P Dang A Ledger S Pomponi P McCarthy J Lopez 2005 A molecular systematic survey of cultured microbial associates of deep-water marine invertebrates Syst Appl Microbiol 28 242 264 10.1016/j.syapm.2004.12.002
-
(2005)
Syst Appl Microbiol
, vol.28
, pp. 242-264
-
-
Sfanos, K.1
Harmody, D.2
Dang, P.3
Ledger, A.4
Pomponi, S.5
McCarthy, P.6
Lopez, J.7
-
36
-
-
10644294903
-
Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods
-
J Süβ B Engelen H Cypionka H Sass 2004 Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods FEMS Microbiol Ecol 51 109 121
-
(2004)
FEMS Microbiol Ecol
, vol.51
, pp. 109-121
-
-
Süß, J.1
Engelen, B.2
Cypionka, H.3
Sass, H.4
-
37
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
JR Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
-
(1997)
Nucleic Acids Res
, vol.24
, pp. 4876-4882
-
-
Thompson, J.R.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
38
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
P Vandamme B Pot M Gillis P de Vos K Kersters J Swings 1996 Polyphasic taxonomy, a consensus approach to bacterial systematics Microbiol Rev 60 407 438
-
(1996)
Microbiol Rev
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
De Vos, P.4
Kersters, K.5
Swings, J.6
-
39
-
-
0037590011
-
Extremophiles as a source for novel enzymes
-
B van den Burg 2003 Extremophiles as a source for novel enzymes Curr Opin Microbiol 6 213 218
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 213-218
-
-
Van Den Burg, B.1
-
40
-
-
0026051050
-
Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen
-
JJ Walsh 1991 Importance of continental margins in the marine biogeochemical cycling of carbon and nitrogen Nature 350 53 55
-
(1991)
Nature
, vol.350
, pp. 53-55
-
-
Walsh, J.J.1
-
41
-
-
16544391474
-
Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep-sea sediments from the west Pacific
-
F Wang P Wang M Chen X Xiao 2004 Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep-sea sediments from the west Pacific Extremophiles 8 165 168
-
(2004)
Extremophiles
, vol.8
, pp. 165-168
-
-
Wang, F.1
Wang, P.2
Chen, M.3
Xiao, X.4
-
42
-
-
17344369624
-
Preface to the special section on Okinawa Trough: Sedimentary processes and paleoenvironment
-
KY Wei 2005 Preface to the special section on Okinawa Trough: sedimentary processes and paleoenvironment Terr Atmos Ocean Sci 16 I V
-
(2005)
Terr Atmos Ocean Sci
, vol.16
-
-
Wei, K.Y.1
-
43
-
-
17344369488
-
Age model and oxygen isotope stratigraphy of site ODP1202 in the Southern Okinawa Trough, northwestern Pacific
-
KY Wei H Mii CY Huang 2005 Age model and oxygen isotope stratigraphy of site ODP1202 in the Southern Okinawa Trough, northwestern Pacific Terr Atmos Ocean Sci 16 1 17
-
(2005)
Terr Atmos Ocean Sci
, vol.16
, pp. 1-17
-
-
Wei, K.Y.1
Mii, H.2
Huang, C.Y.3
-
44
-
-
0002703711
-
Identification and classification of Vibrionaceae and overview
-
John Wiley New York
-
West PA, Colwell RR (1984) Identification and classification of Vibrionaceae and overview. In: Colwell RR (ed) Vibrios in the environment. John Wiley, New York, pp 285-363
-
(1984)
Vibrios in the Environment
, pp. 285-363
-
-
West, P.A.1
Colwell, R.R.2
Colwell, R.R.3
-
46
-
-
0033835195
-
Pathogenicity of Vibrio harveyi to salmonids
-
X-H Zhang B Austin 2000 Pathogenicity of Vibrio harveyi to salmonids J Fish Dis 23 93 102
-
(2000)
J Fish Dis
, vol.23
, pp. 93-102
-
-
Zhang, X.-H.1
Austin, B.2
|