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Volumn 66, Issue 2, 2000, Pages 467-475

Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RNA 16S; SURFACE WATER;

EID: 0033960446     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.66.2.467-475.2000     Document Type: Article
Times cited : (376)

References (81)
  • 1
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas, S. G., J. Antón, and F. Rodríguez-Valera. 1999. Diversity of free-living and attached bacteria in offshore western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl. Environ. Microbiol. 65:514-522.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 514-522
    • Acinas, S.G.1    Antón, J.2    Rodríguez-Valera, F.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 5
    • 0014425073 scopus 로고
    • Adhesion. Mechanisms that assist or impede it
    • Baier, R. E., E. G. Shafrin, and W. A. Zisman. 1968. Adhesion. Mechanisms that assist or impede it. Science 162:1360-1368.
    • (1968) Science , vol.162 , pp. 1360-1368
    • Baier, R.E.1    Shafrin, E.G.2    Zisman, W.A.3
  • 7
    • 0032898403 scopus 로고    scopus 로고
    • Physico-chemistry of initial microbial adhesive interactions - Its mechanisms and methods for study
    • Bos, R., H. C. van der Mei, and H. J. Busscher. 1999. Physico-chemistry of initial microbial adhesive interactions - its mechanisms and methods for study. FEMS Microbiol. Rev. 23:179-230.
    • (1999) FEMS Microbiol. Rev. , vol.23 , pp. 179-230
    • Bos, R.1    Van Der Mei, H.C.2    Busscher, H.J.3
  • 8
    • 0003101854 scopus 로고
    • The study of microorganisms in situ: Progress and problems
    • Brock, T. D. 1987. The study of microorganisms in situ: progress and problems. Symp. Soc. Gen. Microbiol. 41:1-17.
    • (1987) Symp. Soc. Gen. Microbiol. , vol.41 , pp. 1-17
    • Brock, T.D.1
  • 10
    • 0029020195 scopus 로고
    • Initial microbial adhesion is a determinant for the strength of biofilm adhesion
    • Busscher, H. J., R. Bos, and H. C. van der Mei. 1995. Initial microbial adhesion is a determinant for the strength of biofilm adhesion. FEMS Microbiol. Lett. 128:229-234.
    • (1995) FEMS Microbiol. Lett. , vol.128 , pp. 229-234
    • Busscher, H.J.1    Bos, R.2    Van Der Mei, H.C.3
  • 12
    • 0002166020 scopus 로고
    • Physiological ecology in biofilm systems
    • W. G. Characklis and K. C. Marshall (ed.), John Wiley & Sons, New York, N.Y.
    • Characklis, W. G., G. A. McFeters, and K. C. Marshall. 1990. Physiological ecology in biofilm systems, p. 341-394. In W. G. Characklis and K. C. Marshall (ed.), Biofilms. John Wiley & Sons, New York, N.Y.
    • (1990) Biofilms , pp. 341-394
    • Characklis, W.G.1    McFeters, G.A.2    Marshall, K.C.3
  • 13
    • 0028993617 scopus 로고
    • Adhesion of bacteria and diatoms to surfaces in the sea - A review
    • Cooksey, K. E., and B. Wigglesworth-Cooksey. 1995. Adhesion of bacteria and diatoms to surfaces in the sea - a review. Aquat. Microb. Ecol. 9:87-96.
    • (1995) Aquat. Microb. Ecol. , vol.9 , pp. 87-96
    • Cooksey, K.E.1    Wigglesworth-Cooksey, B.2
  • 14
    • 0033591467 scopus 로고    scopus 로고
    • Bacterial biofilms: A common cause of persistent infections
    • Costerton, J. W., P. S. Stewart, and E. P. Greenberg. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318-1322.
    • (1999) Science , vol.284 , pp. 1318-1322
    • Costerton, J.W.1    Stewart, P.S.2    Greenberg, E.P.3
  • 16
    • 0001847041 scopus 로고
    • Microbial exopolymer secretions in ocean environments: Their role(s) in food webs and marine processes
    • Decho, A. W. 1990. Microbial exopolymer secretions in ocean environments: their role(s) in food webs and marine processes. Oceanogr. Mar. Biol. Annu. Rev. 28:73-153.
    • (1990) Oceanogr. Mar. Biol. Annu. Rev. , vol.28 , pp. 73-153
    • Decho, A.W.1
  • 17
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
    • DeLong, E. F., D. G. Franks, and A. L. Alldredge. 1993. Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38:924-934.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 18
    • 0029032318 scopus 로고
    • Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
    • Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2798-2801
    • Farrelly, V.1    Rainey, F.A.2    Stackebrandt, E.3
  • 19
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 22
    • 0028294746 scopus 로고
    • Microbial deterioration of materials - Biofilm and biofouling - Biofouling
    • Flemming, H. C., and G. Schaule. 1994. Microbial deterioration of materials - biofilm and biofouling - biofouling. Werkst. Korros. 45:29-39.
    • (1994) Werkst. Korros. , vol.45 , pp. 29-39
    • Flemming, H.C.1    Schaule, G.2
  • 23
    • 0002163002 scopus 로고    scopus 로고
    • Bacterial attachment in aquatic environments: A diversity of surfaces and adhesion strategies
    • M. Fletcher (ed.), Wiley-Liss, New York, N.Y.
    • Fletcher, M. 1996. Bacterial attachment in aquatic environments: a diversity of surfaces and adhesion strategies, p. 1-24. In M. Fletcher (ed.), Bacterial adhesion: molecular and ecological diversity. Wiley-Liss, New York, N.Y.
    • (1996) Bacterial Adhesion: Molecular and Ecological Diversity , pp. 1-24
    • Fletcher, M.1
  • 24
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from Atlantic and Pacific oceans
    • Fuhrman, J. A., K. McCallum, and A. A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from Atlantic and Pacific oceans. Appl. Environ. Microbiol. 59:1294-1302.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 25
    • 0028799334 scopus 로고
    • Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. Nov., and proposal of twelve new species combinations
    • Gauthier, G., M. Gauthier, and R. Christen. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int. J. Syst. Bacteriol. 45:755-761.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 755-761
    • Gauthier, G.1    Gauthier, M.2    Christen, R.3
  • 26
  • 27
    • 0032905976 scopus 로고    scopus 로고
    • Identification of culturable oligotrophic bacteria within naturally occurring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing
    • Giuliano, L., M. De Domenico, E. De Domenico, M. G. Höfle, and M. M. Yakimov. 1999. Identification of culturable oligotrophic bacteria within naturally occurring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing. Microb. Ecol. 37:77-85.
    • (1999) Microb. Ecol. , vol.37 , pp. 77-85
    • Giuliano, L.1    De Domenico, M.2    De Domenico, E.3    Höfle, M.G.4    Yakimov, M.M.5
  • 28
    • 0342940789 scopus 로고    scopus 로고
    • Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater
    • González, J. M., and M. A. Moran. 1997. Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl. Environ. Microbiol. 63:4237-4242.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4237-4242
    • González, J.M.1    Moran, M.A.2
  • 29
    • 0030788037 scopus 로고    scopus 로고
    • Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment
    • González, J. M., F. Mayer, M. A. Moran, R. E. Hodson, and W. B. Whitman. 1997. Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment. Int. J. Syst. Bacteriol. 47:773-780.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 773-780
    • González, J.M.1    Mayer, F.2    Moran, M.A.3    Hodson, R.E.4    Whitman, W.B.5
  • 30
    • 0041029935 scopus 로고    scopus 로고
    • Transformation of sulfur compounds by an abundant lineage of marine bacteria in the α-subclass of the class Proteobacteria
    • González, J. M., R. P. Kiene, and M. A. Moran. 1999. Transformation of sulfur compounds by an abundant lineage of marine bacteria in the α-subclass of the class Proteobacteria. Appl. Environ. Microbiol. 65:3810-3819.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3810-3819
    • González, J.M.1    Kiene, R.P.2    Moran, M.A.3
  • 31
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good, I. J. 1953. The population frequencies of species and the estimation of population parameters. Biometrica 40:237-264.
    • (1953) Biometrica , vol.40 , pp. 237-264
    • Good, I.J.1
  • 32
    • 0029667158 scopus 로고    scopus 로고
    • Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans
    • Gordon, D. A., and S. J. Giovannoni. 1996. Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans. Appl. Environ. Microbiol. 62:1171-1177.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1171-1177
    • Gordon, D.A.1    Giovannoni, S.J.2
  • 33
    • 0031982528 scopus 로고    scopus 로고
    • Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
    • Head, I. M., J. R. Saunders, and R. W. Pickup. 1998. Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microb. Ecol. 35:1-21.
    • (1998) Microb. Ecol. , vol.35 , pp. 1-21
    • Head, I.M.1    Saunders, J.R.2    Pickup, R.W.3
  • 34
    • 0019862344 scopus 로고
    • A rapid boiling method for the preparation of bacterial plasmids
    • Holmes, D. S., and M. Quigley. 1981. A rapid boiling method for the preparation of bacterial plasmids. Anal. Biochem. 114:193-197.
    • (1981) Anal. Biochem. , vol.114 , pp. 193-197
    • Holmes, D.S.1    Quigley, M.2
  • 35
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Huelsenbeck, J. P., and D. M. Hillis. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.P.1    Hillis, D.M.2
  • 36
    • 0030586751 scopus 로고    scopus 로고
    • Attachment of bacteria to model solid surfaces: Oligo(ethylene glycol) surfaces inhibit bacterial attachment
    • Ista, L. K., H. Y. Fan, O. Baca, and G. P. Lopez. 1996. Attachment of bacteria to model solid surfaces: oligo(ethylene glycol) surfaces inhibit bacterial attachment. FEMS Microbiol. Lett. 142:59-63.
    • (1996) FEMS Microbiol. Lett. , vol.142 , pp. 59-63
    • Ista, L.K.1    Fan, H.Y.2    Baca, O.3    Lopez, G.P.4
  • 37
    • 0542442094 scopus 로고    scopus 로고
    • High phylogenetic diversity in a marine-snow-associated bacterial assemblage
    • Johannes, R., K. Y. Wu, G. J. Herndl, and E. F. DeLong. 1998. High phylogenetic diversity in a marine-snow-associated bacterial assemblage. Aquat. Microb. Ecol. 14:261-269.
    • (1998) Aquat. Microb. Ecol. , vol.14 , pp. 261-269
    • Johannes, R.1    Wu, K.Y.2    Herndl, G.J.3    DeLong, E.F.4
  • 38
    • 12044253704 scopus 로고
    • Improving the accuracy of phylogenetic estimation by combining different methods
    • Kim, J. 1993. Improving the accuracy of phylogenetic estimation by combining different methods. Syst. Biol. 42:331-340.
    • (1993) Syst. Biol. , vol.42 , pp. 331-340
    • Kim, J.1
  • 39
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 40
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopezynski, E. D., M. M. Bateson, and D. M. Ward. 1994. Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Environ. Microbiol. 60:746-748.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 746-748
    • Kopezynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 41
    • 0028914833 scopus 로고
    • Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima
    • Lafay, B., R. Ruimy, C. Rausch de Traubenberg, V. Breittmayer, M. J. Gauthier, and R. Christen. 1995. Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima. Int. J. Syst. Bacteriol. 45:290-296.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 290-296
    • Lafay, B.1    Ruimy, R.2    Rausch De Traubenberg, C.3    Breittmayer, V.4    Gauthier, M.J.5    Christen, R.6
  • 42
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (ed.), John Wiley & Sons, Chichester, United Kingdom
    • Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 43
    • 0008740095 scopus 로고
    • Bacterial biofilms and surface fouling
    • Lappin-Scott, H. M., and J. M. Costerton. 1989. Bacterial biofilms and surface fouling. Biofouling 1:323-342.
    • (1989) Biofouling , vol.1 , pp. 323-342
    • Lappin-Scott, H.M.1    Costerton, J.M.2
  • 44
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack, W., and E. Stackebrandt. 1992. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J. Bacteriol. 174:5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 45
    • 0028111397 scopus 로고
    • Purification of DNA from estuarine sediments
    • Lovell, C. R., and Y. Piceno. 1994. Purification of DNA from estuarine sediments. J. Microbiol. Methods 20:161-174.
    • (1994) J. Microbiol. Methods , vol.20 , pp. 161-174
    • Lovell, C.R.1    Piceno, Y.2
  • 48
    • 0001787303 scopus 로고
    • Mechanisms of bacterial adhesion al solid-water in terfaces
    • D. C. Savage and M. Fletcher (ed.), Plenum Press, New York. N.Y.
    • Marshall, K. C. 1985. Mechanisms of bacterial adhesion al solid-water in terfaces, p. 133-161. In D. C. Savage and M. Fletcher (ed.), Bacterial adhesion. Plenum Press, New York. N.Y.
    • (1985) Bacterial Adhesion , pp. 133-161
    • Marshall, K.C.1
  • 49
    • 0000163537 scopus 로고
    • Biofilms: An overview of bacterial adhesion, activity, and control at surfaces
    • Marshall, K. C. 1992. Biofilms: an overview of bacterial adhesion, activity, and control at surfaces. ASM News 58:202-207.
    • (1992) ASM News , vol.58 , pp. 202-207
    • Marshall, K.C.1
  • 50
    • 0031015322 scopus 로고    scopus 로고
    • Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater
    • Massol-Deya, A., R. Weller, L. Rios-Hernandez, J. Z. Zhou, R. F. Hickey, and J. M. Tiedje. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Appl. Environ. Microbiol. 43:270-276.
    • (1997) Appl. Environ. Microbiol. , vol.43 , pp. 270-276
    • Massol-Deya, A.1    Weller, R.2    Rios-Hernandez, L.3    Zhou, J.Z.4    Hickey, R.F.5    Tiedje, J.M.6
  • 51
    • 0001534985 scopus 로고
    • Genetic diversity in natural populations of a soil bacterium across a landscape gradient
    • McArthur, J. V., D. A. Kovacic, and M. H. Smith. 1988. Genetic diversity in natural populations of a soil bacterium across a landscape gradient. Proc. Natl. Acad. Sci. USA 85:9621-9624.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 9621-9624
    • McArthur, J.V.1    Kovacic, D.A.2    Smith, M.H.3
  • 52
    • 0028161159 scopus 로고
    • Microbial life in sedimentary biofilms - The challenge to microbial ecologists
    • Meyer Reil, L. A. 1994. Microbial life in sedimentary biofilms - the challenge to microbial ecologists. Mar. Ecol. Prog. Ser. 112:303-311.
    • (1994) Mar. Ecol. Prog. Ser. , vol.112 , pp. 303-311
    • Meyer Reil, L.A.1
  • 54
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system. Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs, and D. M. Karl. 1994. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system. Loihi Seamount, Hawaii. Appl. Environ. Microbiol. 60:871-879.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 55
    • 0028976712 scopus 로고
    • Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
    • Mullins, T. D., T. B. Britschgi, R. L. Krest, and S. J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40:148-158.
    • (1995) Limnol. Oceanogr. , vol.40 , pp. 148-158
    • Mullins, T.D.1    Britschgi, T.B.2    Krest, R.L.3    Giovannoni, S.J.4
  • 57
    • 0000249479 scopus 로고
    • Particulate organic detritus in a Georgia salt marsh-estuarine ecosystem
    • G. H. Lauff (ed.), American Association for the Advancement of Science, Washington, D.C.
    • Odum, E. P., and A. A. de la Cruz. 1967. Particulate organic detritus in a Georgia salt marsh-estuarine ecosystem, p. 383-388. In G. H. Lauff (ed.), Estuaries. AAAS Publication 83. American Association for the Advancement of Science, Washington, D.C.
    • (1967) Estuaries. AAAS Publication , vol.83 , pp. 383-388
    • Odum, E.P.1    De La Cruz, A.A.2
  • 59
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen, G. J., H. Matsuda, R. Hagstrom, and R. Overbeek. 1994. FastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 60
    • 0000694894 scopus 로고    scopus 로고
    • New perspective on the natural microbial world: Molecular microbial ecology
    • Pace, N. R. 1996. New perspective on the natural microbial world: molecular microbial ecology. ASM News 62:463-470.
    • (1996) ASM News , vol.62 , pp. 463-470
    • Pace, N.R.1
  • 61
    • 0002842298 scopus 로고
    • The analysis of natural microbial communities by ribosomal RNA sequences
    • Pace, N. R., D. A. Stahl, D. J. Lane, and G. J. Olsen. 1986. The analysis of natural microbial communities by ribosomal RNA sequences. Microb. Ecol. 9:1-55.
    • (1986) Microb. Ecol. , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 62
    • 0030023234 scopus 로고    scopus 로고
    • Description of a new polymer-secreting bacterium from a deep-sea hydrothermal vent, Alteromonas macleodii subsp. fijiensis, and preliminary characterization of the polymer
    • Raguenes, G., P. Pignet, G. Gauthier, A. Peres, R. Christen, H. Rougeaux, G. Barbier, and J. Guezennec. 1996. Description of a new polymer-secreting bacterium from a deep-sea hydrothermal vent, Alteromonas macleodii subsp. fijiensis, and preliminary characterization of the polymer. Appl. Environ. Microbiol. 62:67-73.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 67-73
    • Raguenes, G.1    Pignet, P.2    Gauthier, G.3    Peres, A.4    Christen, R.5    Rougeaux, H.6    Barbier, G.7    Guezennec, J.8
  • 63
  • 64
    • 0028915470 scopus 로고
    • Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences
    • Robison-Cox, J. F., M. M. Bateson, and D. M. Ward. 1995. Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences. Appl. Environ. Microbiol. 61:1240-1245.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1240-1245
    • Robison-Cox, J.F.1    Bateson, M.M.2    Ward, D.M.3
  • 65
    • 0026543129 scopus 로고
    • Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev
    • Ruger, H. J., and M. G. Hofle. 1992. Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev. Int. J. Syst. Bacteriol. 42:133-143.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 133-143
    • Ruger, H.J.1    Hofle, M.G.2
  • 66
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 67
    • 0015415190 scopus 로고
    • Observations on the post-transcriptionally modified nucleotides in the 16S ribosomal ribonucleic acid
    • Sogin, M. L., K. J. Pechman, L. Zablen, B. J. Lewis, and C. R. Woese. 1972. Observations on the post-transcriptionally modified nucleotides in the 16S ribosomal ribonucleic acid. J. Bacteriol. 112:13-22.
    • (1972) J. Bacteriol. , vol.112 , pp. 13-22
    • Sogin, M.L.1    Pechman, K.J.2    Zablen, L.3    Lewis, B.J.4    Woese, C.R.5
  • 68
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M. T., and S. J. Giovannoni. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl. Environ. Microbiol. 62:625-630.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 69
    • 0000350247 scopus 로고
    • Energy flow in the salt marsh ecosystem of Georgia
    • Teal, J. M. 1962. Energy flow in the salt marsh ecosystem of Georgia. Ecology 43:614-624.
    • (1962) Ecology , vol.43 , pp. 614-624
    • Teal, J.M.1
  • 70
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 72
    • 0030844080 scopus 로고    scopus 로고
    • Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes
    • Wang, G. C., and Y. Wang. 1997. Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes. Appl. Environ. Microbiol. 63:4645-4650.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4645-4650
    • Wang, G.C.1    Wang, Y.2
  • 74
    • 0025443548 scopus 로고
    • 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community
    • Ward, D. M., R. Weller, and M. M. Bateson. 1990, 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community. FEMS Microbiol. Rev. 75:105-116.
    • (1990) FEMS Microbiol. Rev. , vol.75 , pp. 105-116
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 75
    • 0029668450 scopus 로고    scopus 로고
    • Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated hy restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • Weidner, S., W. Arnold, and A. Puhler. 1996. Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated hy restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes. Appl. Environ. Microbiol. 62:766-771.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 766-771
    • Weidner, S.1    Arnold, W.2    Puhler, A.3
  • 76
    • 0028959822 scopus 로고
    • Bacterial adhesion to hydroxyl-and methyl-terminated alkanethiol self-assembled monolayers
    • Wiencek, K. M., and M. Fletcher. 1995. Bacterial adhesion to hydroxyl-and methyl-terminated alkanethiol self-assembled monolayers. J. Bacteriol. 177: 1959-1966.
    • (1995) J. Bacteriol. , vol.177 , pp. 1959-1966
    • Wiencek, K.M.1    Fletcher, M.2
  • 77
    • 0031425927 scopus 로고    scopus 로고
    • Effects of substratum wettability and molecular topography on the initial adhesion of bacteria to chemically defined substrata
    • Wiencek, K. M., and M. Fletcher. 1997. Effects of substratum wettability and molecular topography on the initial adhesion of bacteria to chemically defined substrata. Biofouling 11:293-311.
    • (1997) Biofouling , vol.11 , pp. 293-311
    • Wiencek, K.M.1    Fletcher, M.2
  • 78
    • 0030511951 scopus 로고    scopus 로고
    • Ecological determinants of biofilm formation
    • Wimpenny, J. 1996. Ecological determinants of biofilm formation. Biofouling 10:43-63.
    • (1996) Biofouling , vol.10 , pp. 43-63
    • Wimpenny, J.1
  • 79
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.