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Volumn 17, Issue 8, 2007, Pages 1379-1384

Sufflavibacter maritimus gen. nov., sp. nov., novel Flavobacteriaceae bacteria isolated from marine environments

Author keywords

East Sea; Nankai trough; Polyphasic taxonomy; Sufflavibacter maritimus

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; RNA 16S;

EID: 34548510888     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (3)

References (40)
  • 1
    • 34249094739 scopus 로고    scopus 로고
    • Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome
    • Bae, S. S., K. K. Kwon, S. H. Yang, H.-S. Lee, S.-J. Kim, and J.-H. Lee. 2007. Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome. Int. J. Syst. Evol. Microbiol. 57: 1050-1054.
    • (2007) Int. J. Syst. Evol. Microbiol , vol.57 , pp. 1050-1054
    • Bae, S.S.1    Kwon, K.K.2    Yang, S.H.3    Lee, H.-S.4    Kim, S.-J.5    Lee, J.-H.6
  • 3
    • 0035989637 scopus 로고    scopus 로고
    • Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family
    • Bernardet, J.-F., Y. Nakagawa, and B. Holmes. 2002. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 52: 1049-1070.
    • (2002) Int. J. Syst. Evol. Microbiol , vol.52 , pp. 1049-1070
    • Bernardet, J.-F.1    Nakagawa, Y.2    Holmes, B.3
  • 4
    • 0037368961 scopus 로고    scopus 로고
    • Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae
    • Cho, J.-C. and S. J. Giovannoni. 2003. Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst. Appl. Microbiol. 26: 76-83.
    • (2003) Syst. Appl. Microbiol , vol.26 , pp. 76-83
    • Cho, J.-C.1    Giovannoni, S.J.2
  • 5
    • 0042311188 scopus 로고    scopus 로고
    • Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria
    • Cho, J.-C. and S. J. Giovannoni. 2003. Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria. Int. J. Syst. Evol. Microbiol. 53: 1031-1036.
    • (2003) Int. J. Syst. Evol. Microbiol , vol.53 , pp. 1031-1036
    • Cho, J.-C.1    Giovannoni, S.J.2
  • 6
    • 27944450399 scopus 로고    scopus 로고
    • Bacterial communities of biofilms sampled from seepage groundwater contaminated with petroleum oil
    • Cho, W., E.-H. Lee, E.-H. Shim, J. Kim, H. W. Ryu, and K.-S. Cho. 2005. Bacterial communities of biofilms sampled from seepage groundwater contaminated with petroleum oil. J. Microbiol. Biotechnol. 15: 952-964.
    • (2005) J. Microbiol. Biotechnol , vol.15 , pp. 952-964
    • Cho, W.1    Lee, E.-H.2    Shim, E.-H.3    Kim, J.4    Ryu, H.W.5    Cho, K.-S.6
  • 7
    • 0028904058 scopus 로고
    • A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences
    • Chun, J. and M. Goodfellow. 1995. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45: 240-245.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 240-245
    • Chun, J.1    Goodfellow, M.2
  • 8
    • 0003122014 scopus 로고
    • Isoprenoid quinone analysis in bacterial classification and identification
    • M. Goodfellow and D. E. Minikin eds, Academic Press, London
    • Collins, M. D. 1985. Isoprenoid quinone analysis in bacterial classification and identification, pp. 267-287. In M. Goodfellow and D. E. Minikin (eds.), Chemical Methods in Bacterial Systematics. Academic Press, London.
    • (1985) Chemical Methods in Bacterial Systematics , pp. 267-287
    • Collins, M.D.1
  • 9
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
    • Cottrell, M. T. and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66: 1692-1697.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 10
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of pelagic bacteria from the North Sea
    • Eilers, H., J. Pernthaler, F. O. Glöckner, and R. Amann. 2000. Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66: 3044-3051.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 3044-3051
    • Eilers, H.1    Pernthaler, J.2    Glöckner, F.O.3    Amann, R.4
  • 11
    • 0018828401 scopus 로고
    • A simple test for flexirubin-type pigments
    • Fautz, E. and H. Reichenbach. 1980. A simple test for flexirubin-type pigments. FEMS Microbiol. Lett. 8: 87-91.
    • (1980) FEMS Microbiol. Lett , vol.8 , pp. 87-91
    • Fautz, E.1    Reichenbach, H.2
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 34548484295 scopus 로고    scopus 로고
    • Garrity, G. M. and J. G. Holt. 2001. The road map to the Manual, pp. 119-166. In D. R. Boone, R. W. Castenholz, and G. M. Garrity (eds.), Bergey's Manual of Systematic Bacteriology, 2nd Ed. 1. Springer, New York.
    • Garrity, G. M. and J. G. Holt. 2001. The road map to the Manual, pp. 119-166. In D. R. Boone, R. W. Castenholz, and G. M. Garrity (eds.), Bergey's Manual of Systematic Bacteriology, 2nd Ed. Vol. 1. Springer, New York.
  • 15
    • 0032905976 scopus 로고    scopus 로고
    • Identification of culturable oligotrophic bacteria within naturally occuring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing
    • Giuliano, L., M. De Domenico, E. De Domenico, M. G. Höfle, and M. M. Yakimov. 1999. Identification of culturable oligotrophic bacteria within naturally occuring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing. Microb. Ecol. 37: 77-85.
    • (1999) Microb. Ecol , vol.37 , pp. 77-85
    • Giuliano, L.1    De Domenico, M.2    De Domenico, E.3    Höfle, M.G.4    Yakimov, M.M.5
  • 16
    • 17644439150 scopus 로고    scopus 로고
    • Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
    • Glöckner, F. O., B. M. Fuchs, and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65: 3721-3726.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 3721-3726
    • Glöckner, F.O.1    Fuchs, B.M.2    Amann, R.3
  • 17
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. R., N. Larsen, and C. R. Woese. 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58: 10-26.
    • (1994) Microbiol. Rev , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 18
    • 23744456589 scopus 로고    scopus 로고
    • Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean Sea
    • Heijs, S. K., J. S. Sinninghe Damsté, and L. J. Forney. 2005. Characterization of a deep-sea microbial mat from an active cold seep at the Milano mud volcano in the Eastern Mediterranean Sea. FEMS Microbiol. Ecol. 54: 47-56.
    • (2005) FEMS Microbiol. Ecol , vol.54 , pp. 47-56
    • Heijs, S.K.1    Sinninghe Damsté, J.S.2    Forney, L.J.3
  • 21
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro ed, Academic Press, New York
    • Jukes, T. H. and C. R. Cantor. 1969. Evolution of protein molecules, pp. 21-132. In H. N. Munro (ed.), Mammalian Protein Metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 22
    • 1542285317 scopus 로고    scopus 로고
    • Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis
    • Kim, B. S., H.-Y. Oh, H. Kang, S.-S. Park, and J. Chun. 2004. Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J. Microbiol. Biotechnol. 14: 205-211.
    • (2004) J. Microbiol. Biotechnol , vol.14 , pp. 205-211
    • Kim, B.S.1    Oh, H.-Y.2    Kang, H.3    Park, S.-S.4    Chun, J.5
  • 23
    • 0038107871 scopus 로고    scopus 로고
    • Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176)
    • Kormas, K. Ar., D. C. Smith, V. Edgcomb, and A. Teske. 2003. Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiol. Ecol. 45: 115-125.
    • (2003) FEMS Microbiol. Ecol , vol.45 , pp. 115-125
    • Kormas, K.A.1    Smith, D.C.2    Edgcomb, V.3    Teske, A.4
  • 24
    • 26244431719 scopus 로고    scopus 로고
    • Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage ( Kordiimonadales ord. nov.) in the 'Alphaproteobacteria'. Int
    • Kwon, K. K., H.-S. Lee, S. H. Yang, and S.-J. Kim. 2005. Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage ( Kordiimonadales ord. nov.) in the 'Alphaproteobacteria'. Int. J. Syst. Evol. Microbiol. 55: 2033-2037.
    • (2005) J. Syst. Evol. Microbiol , vol.55 , pp. 2033-2037
    • Kwon, K.K.1    Lee, H.-S.2    Yang, S.H.3    Kim, S.-J.4
  • 26
    • 0035216085 scopus 로고    scopus 로고
    • High prokaryote diversity and analysis of community structure in mobile mud deposits off French Guiana: Identification of two new bacterial candidate divisions
    • Madrid, V. M., J. Y. Aller, R. C. Aller, and A. Y. Chistoserdov. 2001. High prokaryote diversity and analysis of community structure in mobile mud deposits off French Guiana: Identification of two new bacterial candidate divisions. FEMS Microbiol. Ecol. 37: 197-209.
    • (2001) FEMS Microbiol. Ecol , vol.37 , pp. 197-209
    • Madrid, V.M.1    Aller, J.Y.2    Aller, R.C.3    Chistoserdov, A.Y.4
  • 27
    • 0034112539 scopus 로고    scopus 로고
    • Taxonomy of Antarctic Flavobacterium species: Description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov
    • McCammon, S. A. and J. P. Bowman. 2000. Taxonomy of Antarctic Flavobacterium species: Description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 50: 1055-1063.
    • (2000) Int. J. Syst. Evol. Microbiol , vol.50 , pp. 1055-1063
    • McCammon, S.A.1    Bowman, J.P.2
  • 29
    • 4344606226 scopus 로고    scopus 로고
    • Nedashkovskaya, O. I., M. Suzuki, M. Vancanneyt, I. Cleenwerck, N. V. Zhukova, M. V. Vysotskii, V. V. Mikhailov, and J. Swing. 2004. Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus. Int. J. Syst. Evol. Microbiol. 54: 1107-1110.
    • Nedashkovskaya, O. I., M. Suzuki, M. Vancanneyt, I. Cleenwerck, N. V. Zhukova, M. V. Vysotskii, V. V. Mikhailov, and J. Swing. 2004. Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus. Int. J. Syst. Evol. Microbiol. 54: 1107-1110.
  • 30
    • 13244275250 scopus 로고    scopus 로고
    • Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius
    • Nedashkovskaya, O. I., S. B. Kim, A. M. Lysenko, G. M. Frolova, V. V. Mikhailov, K. S. Bae, D. H. Lee, and I. S. Kim. 2005. Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Microbiol. 55: 391-394.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 391-394
    • Nedashkovskaya, O.I.1    Kim, S.B.2    Lysenko, A.M.3    Frolova, G.M.4    Mikhailov, V.V.5    Bae, K.S.6    Lee, D.H.7    Kim, I.S.8
  • 34
    • 33751042574 scopus 로고    scopus 로고
    • Characterization of the microbial diversity in a Korean solar saltern by 16S rRNA gene analysis
    • Park, S.-J., C.-H. Kang, and S.-K. Lee. 2006. Characterization of the microbial diversity in a Korean solar saltern by 16S rRNA gene analysis. J. Microbiol. Biotechnol. 16: 1640-1645.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 1640-1645
    • Park, S.-J.1    Kang, C.-H.2    Lee, S.-K.3
  • 35
    • 33144484401 scopus 로고    scopus 로고
    • Characterization of bacterial communities associated with deep-sea corals on gulf of Alaska seamounts
    • Penn, K., D. Wu, J. A. Eisen, and N. Ward. 2006. Characterization of bacterial communities associated with deep-sea corals on gulf of Alaska seamounts. Appl. Environ. Microbiol. 72: 1680-1683.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 1680-1683
    • Penn, K.1    Wu, D.2    Eisen, J.A.3    Ward, N.4
  • 36
    • 34548479211 scopus 로고    scopus 로고
    • AL, pp. 2011-2013. In J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (eds.), Bergey's Manual of Systematic Bacteriology, 3. Williams & Wilkins, Baltimore.
    • AL, pp. 2011-2013. In J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (eds.), Bergey's Manual of Systematic Bacteriology, Vol. 3. Williams & Wilkins, Baltimore.
  • 37
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 38
    • 33846512779 scopus 로고    scopus 로고
    • Some universal characteristics of intertidal bacterial diversity as revealed by 16S rRNA gene-based PCR clone analysis
    • Shuang, J. L., C. H. Liu, S. Q. An, Y. Xing, G. Q. Zheng, and Y. F. Shen. 2006. Some universal characteristics of intertidal bacterial diversity as revealed by 16S rRNA gene-based PCR clone analysis. J. Microbiol. Biotechnol. 16: 1882-1889.
    • (2006) J. Microbiol. Biotechnol , vol.16 , pp. 1882-1889
    • Shuang, J.L.1    Liu, C.H.2    An, S.Q.3    Xing, Y.4    Zheng, G.Q.5    Shen, Y.F.6
  • 39
    • 33846874971 scopus 로고    scopus 로고
    • Bring to Lab of 19 novel species among 60 isolates retrieved from a freshwater pond
    • Song, J., S.-J. Yang, and J.-C. Cho. 2007. "Bring to Lab" of 19 novel species among 60 isolates retrieved from a freshwater pond. J. Microbiol. Biotechnol. 17: 168-175.
    • (2007) J. Microbiol. Biotechnol , vol.17 , pp. 168-175
    • Song, J.1    Yang, S.-J.2    Cho, J.-C.3
  • 40
    • 0000665623 scopus 로고
    • Nucleic acids and classification
    • M. Goodfellow and A. G. O'Donnell eds, Academic Press, London
    • Stackebrandt, E. and W. Liesack. 1993. Nucleic acids and classification, pp. 158-160. In M. Goodfellow and A. G. O'Donnell (eds.). Handbook of New Bacterial Systematics. Academic Press, London.
    • (1993) Handbook of New Bacterial Systematics , pp. 158-160
    • Stackebrandt, E.1    Liesack, W.2


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