메뉴 건너뛰기




Volumn 46, Issue 4, 2008, Pages 310-322

A phylogeny of anisopterous dragonflies (Insecta, Odonata) using mtRNA genes and mixed nucleotide/doublet models

Author keywords

12S; 16S; Anisoptera; Bayesian analyses; Choice of priors; RNA substitution models; Secondary structure; Systematics; tRNA valine

Indexed keywords

BAYESIAN ANALYSIS; DRAGONFLY; GENETIC STRUCTURE; NUMERICAL MODEL; PARSIMONY ANALYSIS; PHYLOGENETICS; PHYLOGENY; RECONSTRUCTION; RNA; TAXONOMY;

EID: 53849113977     PISSN: 09475745     EISSN: 14390469     Source Type: Journal    
DOI: 10.1111/j.1439-0469.2008.00474.x     Document Type: Article
Times cited : (46)

References (96)
  • 1
    • 0036397286 scopus 로고    scopus 로고
    • Characterization of mitochondrial ribosomal RNA genes in gadiformes: Sequence variations, secondary structural features, and phylogenetic implications
    • Bakke I, Johansen S (2002) Characterization of mitochondrial ribosomal RNA genes in gadiformes: sequence variations, secondary structural features, and phylogenetic implications. Mol Phylogen Evol 25 : 87 100.
    • (2002) Mol Phylogen Evol , vol.25 , pp. 87-100
    • Bakke, I.1    Johansen, S.2
  • 2
    • 0034637111 scopus 로고    scopus 로고
    • The complete atomic structure of the large ribosomal subunit at 2.4 a resolution
    • Ban N, Nissen P, Hansen J, Moore PB, Steitz TA (2000) The complete atomic structure of the large ribosomal subunit at 2.4 A resolution. Science 289 : 905 920.
    • (2000) Science , vol.289 , pp. 905-920
    • Ban, N.1    Nissen, P.2    Hansen, J.3    Moore, P.B.4    Steitz, T.A.5
  • 3
    • 0001906801 scopus 로고    scopus 로고
    • Morphologische Untersuchungen am Flügelgeäder der rezenten Libellen und deren Stammgruppenvertreter (Insecta: Odonatoptera), unter besonderer Berücksichtigung der Phylogenetischen Systematik und des Grundplanes der Odonata
    • Bechly G (1996) Morphologische Untersuchungen am Flügelgeäder der rezenten Libellen und deren Stammgruppenvertreter (Insecta: Odonatoptera), unter besonderer Berücksichtigung der Phylogenetischen Systematik und des Grundplanes der Odonata. Petalura (Sp. Vol.) 2 : 1 402.
    • (1996) Petalura (Sp. Vol.) , vol.2 , pp. 1-402
    • Bechly, G.1
  • 4
    • 0031702882 scopus 로고    scopus 로고
    • Four new dragonflies from the upper Jurassic of Germany and the lower Cretaceous of Mongolia (Anisoptera: Hemeroscopidae, Sonidae, and Proterogomphidae fam. nov.)
    • Bechly G, Nel A, Martínez-Delclòs X, Fleck G (1998) Four new dragonflies from the upper Jurassic of Germany and the lower Cretaceous of Mongolia (Anisoptera: Hemeroscopidae, Sonidae, and Proterogomphidae fam. nov.). Odonatologica 27 : 149 187.
    • (1998) Odonatologica , vol.27 , pp. 149-187
    • Bechly, G.1    Nel, A.2    Martínez-Delclòs, X.3    Fleck, G.4
  • 5
    • 0033805074 scopus 로고    scopus 로고
    • Cirripede phylogeny using a novel approach: Molecular morphometrics
    • Billoud B, Guerucci M-A, Masselot M, Deutsch JS (2000) Cirripede phylogeny using a novel approach: molecular morphometrics. Mol Biol Evol 17 : 1435 1445.
    • (2000) Mol Biol Evol , vol.17 , pp. 1435-1445
    • Billoud, B.1    Guerucci, M.-A.2    Masselot, M.3    Deutsch, J.S.4
  • 6
    • 0034509627 scopus 로고    scopus 로고
    • Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene
    • Buckley TR, Simon C, Flook PK, Misof B (2000) Secondary structure and conserved motifs of the frequently sequenced domains IV and V of the insect mitochondrial large subunit rRNA gene. Insect Mol Biol 9 : 565 580.
    • (2000) Insect Mol Biol , vol.9 , pp. 565-580
    • Buckley, T.R.1    Simon, C.2    Flook, P.K.3    Misof, B.4
  • 7
    • 1942509236 scopus 로고    scopus 로고
    • The secondary structure of mammalian Mitochondrial 16S rRNA molecules: Refinements based on a comparative phylogenetic approach
    • Burk A, Douzery EJP, Springer MS (2002) The secondary structure of mammalian Mitochondrial 16S rRNA molecules: refinements based on a comparative phylogenetic approach. J Mamm Evol 9 : 225 252.
    • (2002) J Mamm Evol , vol.9 , pp. 225-252
    • Burk, A.1    Douzery, E.J.P.2    Springer, M.S.3
  • 8
    • 0036182064 scopus 로고    scopus 로고
    • Evolved RNA secondary structure and the rooting of the universal tree of life
    • Caetano-Anollés G (2002a) Evolved RNA secondary structure and the rooting of the universal tree of life. J Mol Evol 54 : 333 345.
    • (2002) J Mol Evol , vol.54 , pp. 333-345
    • Caetano-Anollés, G.1
  • 9
    • 0036606550 scopus 로고    scopus 로고
    • Tracing the evolution of RNA structure in ribosomes
    • Caetano-Anollés G (2002b) Tracing the evolution of RNA structure in ribosomes. Nucleic Acids Res 30 : 2575 2587.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2575-2587
    • Caetano-Anollés, G.1
  • 10
    • 11144314682 scopus 로고    scopus 로고
    • Secondary structure, high variability and conserved motifs for domain III of 12S rRNA in the Arthropleona (Hexapoda; Collembola)
    • Carapelli A, Soto-Adames FN, Simon C, Frati F, Nardi F, Dallai R (2004) Secondary structure, high variability and conserved motifs for domain III of 12S rRNA in the Arthropleona (Hexapoda; Collembola). Insect Mol Biol 13 : 659 670.
    • (2004) Insect Mol Biol , vol.13 , pp. 659-670
    • Carapelli, A.1    Soto-Adames, F.N.2    Simon, C.3    Frati, F.4    Nardi, F.5    Dallai, R.6
  • 11
    • 0001887350 scopus 로고
    • The wing vein homologies and phylogeny of Odonata: A continuing debate
    • Carle FL (1982) The wing vein homologies and phylogeny of Odonata: a continuing debate. Societas Internationalis Odonatologica, Rapid Commun 4 : 1 66.
    • (1982) Societas Internationalis Odonatologica, Rapid Commun , vol.4 , pp. 1-66
    • Carle, F.L.1
  • 12
    • 0000288372 scopus 로고
    • Evolution, taxonomy, and biogeography of ancient Gondwanian libelluloides, with comments on anisopteroid evolution and phylogenetic systematics (Anisoptera: Libelluloidea)
    • Carle FL (1995) Evolution, taxonomy, and biogeography of ancient Gondwanian libelluloides, with comments on anisopteroid evolution and phylogenetic systematics (Anisoptera: Libelluloidea). Odonatologica 24 : 383 506.
    • (1995) Odonatologica , vol.24 , pp. 383-506
    • Carle, F.L.1
  • 13
    • 0000447696 scopus 로고
    • The larva of Neopetalia punctata and establishment of Austropetaliidae fam. nov. (Odonata)
    • Carle FL, Louton JA (1994) The larva of Neopetalia punctata and establishment of Austropetaliidae fam. nov. (Odonata). Proc Ent Soc Wash 96 : 147 155.
    • (1994) Proc Ent Soc Wash , vol.96 , pp. 147-155
    • Carle, F.L.1    Louton, J.A.2
  • 15
    • 0033944805 scopus 로고    scopus 로고
    • Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array
    • Cunningham CO, Aliesky H, Collins CM (2000) Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array. J Parasitol 86 : 567 576.
    • (2000) J Parasitol , vol.86 , pp. 567-576
    • Cunningham, C.O.1    Aliesky, H.2    Collins, C.M.3
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 : 1792 1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 0042745431 scopus 로고    scopus 로고
    • Models of the primary and secondary structure for the 12S rRNA of birds: A guideline for sequence alignment
    • Espinosa de los Monteros A (2003) Models of the primary and secondary structure for the 12S rRNA of birds: a guideline for sequence alignment. DNA Seq J Seq Mapp 14 : 241 256.
    • (2003) DNA Seq J Seq Mapp , vol.14 , pp. 241-256
    • Espinosa De Los Monteros, A.1
  • 18
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates, Inc. Sunderland, Massachusetts.
    • Felsenstein J (2004) Inferring Phylogenies. Sinauer Associates, Inc. Sunderland, Massachusetts.
    • (2004) Inferring Phylogenies.
    • Felsenstein, J.1
  • 19
    • 0014860857 scopus 로고
    • An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
    • Fitch WM, Markowitz E (1970) An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. Biochem Genet 4 : 579 593.
    • (1970) Biochem Genet , vol.4 , pp. 579-593
    • Fitch, W.M.1    Markowitz, E.2
  • 21
    • 0035643999 scopus 로고    scopus 로고
    • Revision and phylogenetic affinities of the Jurassic Steleopteridae Handlirsch, 1906 (Insecta: Odonata: Zygoptera)
    • Fleck G, Nel A, Bechly G, Martínez-Delclòs X (2001) Revision and phylogenetic affinities of the Jurassic Steleopteridae Handlirsch, 1906 (Insecta: Odonata: Zygoptera). Insect Syst Evol 32 : 285 305.
    • (2001) Insect Syst Evol , vol.32 , pp. 285-305
    • Fleck, G.1    Nel, A.2    Bechly, G.3    Martínez-Delclòs, X.4
  • 22
    • 2942635455 scopus 로고    scopus 로고
    • A revision of the Upper Jurassic-Lower Cretaceous dragonfly family Tarsophlebiidae, with a discussion on the phylogenetic positions of the Tarsophlebiidae and Sieblosiidae (Insecta, Odonatoptera, Panodonata)
    • Fleck G, Nel A, Martínez-Delclòs X, Jarzembowski EA, Bechly G (2004) A revision of the Upper Jurassic-Lower Cretaceous dragonfly family Tarsophlebiidae, with a discussion on the phylogenetic positions of the Tarsophlebiidae and Sieblosiidae (Insecta, Odonatoptera, Panodonata). Geodiversitas 26 : 33 60.
    • (2004) Geodiversitas , vol.26 , pp. 33-60
    • Fleck, G.1    Nel, A.2    Martínez-Delclòs, X.3    Jarzembowski, E.A.4    Bechly, G.5
  • 23
    • 0013627582 scopus 로고
    • A reclassification of the order Odonata
    • pl.
    • Fraser FC (1957) A reclassification of the order Odonata. Publ R Zool Soc NSW Sydney, 134, 1 pl.
    • (1957) Publ R Zool Soc NSW Sydney , vol.134 , pp. 1
    • Fraser, F.C.1
  • 24
    • 1642336483 scopus 로고    scopus 로고
    • Sampling properties of the bootstrap support in molecular phylogeny: Influence of nonindependence among sites
    • Galtier N (2004) Sampling properties of the bootstrap support in molecular phylogeny: influence of nonindependence among sites. Syst Biol 53 : 38 46.
    • (2004) Syst Biol , vol.53 , pp. 38-46
    • Galtier, N.1
  • 25
    • 0027616543 scopus 로고
    • Alignment-ambiguous nucleotide sites and the exclusion of systematic data
    • Gatesy J, Desalle R, Wheeler WC (1993) Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Mol Phylogenet Evol 2 : 152 157.
    • (1993) Mol Phylogenet Evol , vol.2 , pp. 152-157
    • Gatesy, J.1    Desalle, R.2    Wheeler, W.C.3
  • 26
    • 0027236838 scopus 로고
    • Comparative studies of RNA: Inferring higher-order structure from patterns of sequence variation
    • Gutell RR (1993) Comparative studies of RNA: inferring higher-order structure from patterns of sequence variation. Curr Opin Struct Biol 3 : 313 322.
    • (1993) Curr Opin Struct Biol , vol.3 , pp. 313-322
    • Gutell, R.R.1
  • 27
    • 0028071557 scopus 로고
    • Collection of small subunit (16S- and 16S-like) ribosomal RNA structures
    • Gutell RR (1994) Collection of small subunit (16S- and 16S-like) ribosomal RNA structures. Nucleic Acids Res 22 : 3502 3507.
    • (1994) Nucleic Acids Res , vol.22 , pp. 3502-3507
    • Gutell, R.R.1
  • 28
    • 0026466830 scopus 로고
    • Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
    • Gutell RR, Power A, Hertz GZ, Putz EJ, Stormo GD (1992) Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res 20 : 5785 5795.
    • (1992) Nucleic Acids Res , vol.20 , pp. 5785-5795
    • Gutell, R.R.1    Power, A.2    Hertz, G.Z.3    Putz, E.J.4    Stormo, G.D.5
  • 29
    • 0036600570 scopus 로고    scopus 로고
    • The accuracy of ribosomal RNA comparative structure models
    • Gutell RR, Lee JC, Caconne JJ (2002) The accuracy of ribosomal RNA comparative structure models. Curr Opin Struct Biol 12 : 301 310.
    • (2002) Curr Opin Struct Biol , vol.12 , pp. 301-310
    • Gutell, R.R.1    Lee, J.C.2    Caconne, J.J.3
  • 30
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Series 41 : 95 98.
    • (1999) Nucleic Acids Symp Series , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 31
    • 0002975582 scopus 로고
    • Kritische Bemerkungen zum phylogenetischen System der Insekten
    • Hennig W (1953) Kritische Bemerkungen zum phylogenetischen System der Insekten. Beitr Entom 3 : 1 85.
    • (1953) Beitr Entom , vol.3 , pp. 1-85
    • Hennig, W.1
  • 32
    • 4243559860 scopus 로고
    • Compensatory neutral mutation and the evolution of RNA
    • P.G. (
    • Hennig W (1969) Die Stammesgeschichte der Insekten. Kramer, Frankfurt am Main. PG (1998) Compensatory neutral mutation and the evolution of RNA. Genetica 102 : 91 101.
    • (1969) Genetica , vol.102 , pp. 91-101
    • Hennig, W.1
  • 33
    • 0034522921 scopus 로고    scopus 로고
    • RNA secondary structure: Physical and computational aspects
    • Higgs PG (2000) RNA secondary structure: physical and computational aspects. Quart Rev Biophys 33 : 199 253.
    • (2000) Quart Rev Biophys , vol.33 , pp. 199-253
    • Higgs, P.G.1
  • 34
    • 0036301332 scopus 로고    scopus 로고
    • Secondary structure prediction for aligned RNA sequences
    • Hofacker IL, Fekete M, Stadler P (2002) Secondary structure prediction for aligned RNA sequences. J Mol Biol 319 : 1059 1066.
    • (2002) J Mol Biol , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.3
  • 35
    • 0037379673 scopus 로고    scopus 로고
    • Phylogeny estimation: Traditional and Bayesian approaches
    • Holder M, Lewis PO (2003) Phylogeny estimation: traditional and Bayesian approaches. Nature Rev Genet 4 : 275 284.
    • (2003) Nature Rev Genet , vol.4 , pp. 275-284
    • Holder, M.1    Lewis, P.O.2
  • 36
    • 0036058704 scopus 로고    scopus 로고
    • The palaeoptera problem: Basal pterygote phylogeny inferred from 18S and 28S rDNA sequences
    • Hovmoeller R, Pape T, Källersjö M (2002) The palaeoptera problem: basal pterygote phylogeny inferred from 18S and 28S rDNA sequences. Cladistics 18 : 313 323.
    • (2002) Cladistics , vol.18 , pp. 313-323
    • Hovmoeller, R.1    Pape, T.2    Källersjö, M.3
  • 37
    • 0141721420 scopus 로고    scopus 로고
    • RNA-based phylogenetic methods: Application to mammalian mitochondrial RNA sequences
    • Hudelot C, Gowri-Shankar V, Jow H, Rattray M, Higgs PG (2003) RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences. Mol Phylogenet Evol 28 : 241 252.
    • (2003) Mol Phylogenet Evol , vol.28 , pp. 241-252
    • Hudelot, C.1    Gowri-Shankar, V.2    Jow, H.3    Rattray, M.4    Higgs, P.G.5
  • 38
    • 0036005522 scopus 로고    scopus 로고
    • Geographic origin of human mitochondrial DNA: Accomodating phylogenetic uncertainty and model comparison
    • Huelsenbeck JP, Imennov NS (2002) Geographic origin of human mitochondrial DNA: accomodating phylogenetic uncertainty and model comparison. Syst Biol 51 : 155 165.
    • (2002) Syst Biol , vol.51 , pp. 155-165
    • Huelsenbeck, J.P.1    Imennov, N.S.2
  • 39
    • 0033139150 scopus 로고    scopus 로고
    • Effect of non-independent substitution on phylogenetic accuracy
    • Huelsenbeck JP, Nielsen R (1999) Effect of non-independent substitution on phylogenetic accuracy. Syst Biol 48 : 317 328.
    • (1999) Syst Biol , vol.48 , pp. 317-328
    • Huelsenbeck, J.P.1    Nielsen, R.2
  • 40
    • 0004134722 scopus 로고    scopus 로고
    • Computer program distributed by the authors. Department of Ecology, Behavior and Evolution, University of California.
    • Huelsenbeck JP, Ronquist F (2002) MrBayes 3: Bayesian analysis of phylogeny. Computer program distributed by the authors. Department of Ecology, Behavior and Evolution, University of California.
    • (2002) MrBayes 3: Bayesian Analysis of Phylogeny.
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 41
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck JP, Ronquist F, Nielsen R, Bollback JP (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294 : 2310 2314.
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 42
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23 : 254 267.
    • (2006) Mol Biol Evol , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 43
    • 0036728808 scopus 로고    scopus 로고
    • Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
    • Jow H, Hudelot C, Rattray M, Higgs PG (2002) Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol Biol Evol 19 : 1591 1601.
    • (2002) Mol Biol Evol , vol.19 , pp. 1591-1601
    • Jow, H.1    Hudelot, C.2    Rattray, M.3    Higgs, P.G.4
  • 44
    • 0029365329 scopus 로고
    • Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from frogs
    • Kjer KM (1995) Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from frogs. Mol Phylogenet Evol 4 : 314 330.
    • (1995) Mol Phylogenet Evol , vol.4 , pp. 314-330
    • Kjer, K.M.1
  • 45
    • 0031452231 scopus 로고    scopus 로고
    • An alignment template for amphibian 12S rRNA, domain III: Conserved primary and secondary structural motifs
    • Kjer KM (1997) An alignment template for amphibian 12S rRNA, domain III: conserved primary and secondary structural motifs. J Herpetol 31 : 599 604.
    • (1997) J Herpetol , vol.31 , pp. 599-604
    • Kjer, K.M.1
  • 46
    • 3242721251 scopus 로고    scopus 로고
    • Aligned 18S and insect phylogeny
    • Kjer KM (2004) Aligned 18S and insect phylogeny. Syst Biol 53 : 506 514.
    • (2004) Syst Biol , vol.53 , pp. 506-514
    • Kjer, K.M.1
  • 47
    • 34247577270 scopus 로고    scopus 로고
    • Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment
    • Kjer KM, Gillespie JJ, Ober KA (2007) Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment. Syst Biol 56 : 133 146.
    • (2007) Syst Biol , vol.56 , pp. 133-146
    • Kjer, K.M.1    Gillespie, J.J.2    Ober, K.A.3
  • 48
    • 70349584520 scopus 로고
    • The phylogeny of the hexapod 'orders': A critical review of recent accounts
    • Kristensen NP (1975) The phylogeny of the hexapod 'orders': a critical review of recent accounts. Z Zool Syst Evol 13 : 1 44.
    • (1975) Z Zool Syst Evol , vol.13 , pp. 1-44
    • Kristensen, N.P.1
  • 49
    • 0001508326 scopus 로고
    • Phylogeny of insect orders
    • Kristensen NP (1981) Phylogeny of insect orders. Annu Rev Entomol 26 : 135 157.
    • (1981) Annu Rev Entomol , vol.26 , pp. 135-157
    • Kristensen, N.P.1
  • 50
    • 0032976397 scopus 로고    scopus 로고
    • Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget B, Simon D (1999) Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol Biol Evol 16 : 750 759.
    • (1999) Mol Biol Evol , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.2
  • 51
    • 0000501466 scopus 로고    scopus 로고
    • Das Phylogenetische System der Anisoptera (Odonata)
    • first part. second part. 'Erster Nachtrag').
    • Lohmann H (1996) Das Phylogenetische System der Anisoptera (Odonata). Entomol Z 106 : 209 252 (first part 106 : 253 266 (second part 106 : 360 367 ('Erster Nachtrag').
    • (1996) Entomol Z , vol.106 , pp. 209-252
    • Lohmann, H.1
  • 52
    • 0034025097 scopus 로고    scopus 로고
    • Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
    • Lydeard C, Holznagel WE, Schnare MN, Gutell RR (2000) Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures. Mol Phylogenet Evol 15 : 83 102.
    • (2000) Mol Phylogenet Evol , vol.15 , pp. 83-102
    • Lydeard, C.1    Holznagel, W.E.2    Schnare, M.N.3    Gutell, R.R.4
  • 53
    • 0344664006 scopus 로고    scopus 로고
    • Comparative analysis of mt 16S rRNA secondary structures of Odonates and its relevance to phylogenetic problems in insect systematics
    • Misof B, Fleck G (2003) Comparative analysis of mt 16S rRNA secondary structures of Odonates and its relevance to phylogenetic problems in insect systematics. Insect Mol Biol 12 : 535 547.
    • (2003) Insect Mol Biol , vol.12 , pp. 535-547
    • Misof, B.1    Fleck, G.2
  • 54
    • 0035152263 scopus 로고    scopus 로고
    • Phylogenetic signal and its decay in mitochondrial SSU and LSU rRNA gene fragments of Anisoptera
    • Misof B, Rickert AM, Buckley TR, Fleck G, Sauer KP (2001) Phylogenetic signal and its decay in mitochondrial SSU and LSU rRNA gene fragments of Anisoptera. Mol Biol Evol 18 : 27 37.
    • (2001) Mol Biol Evol , vol.18 , pp. 27-37
    • Misof, B.1    Rickert, A.M.2    Buckley, T.R.3    Fleck, G.4    Sauer, K.P.5
  • 56
    • 25844516325 scopus 로고    scopus 로고
    • Phylogenetic MCMC algorithms are misleading on mixtures of trees
    • Mossel E, Vigoda E (2005) Phylogenetic MCMC algorithms are misleading on mixtures of trees. Science 309 : 2207 2209.
    • (2005) Science , vol.309 , pp. 2207-2209
    • Mossel, E.1    Vigoda, E.2
  • 57
    • 30644463379 scopus 로고    scopus 로고
    • Identification of evolutionary conserved structural elements in the mt SSU rRNA of Zygaenoidea (Lepidoptera): A comparative sequence analysis
    • (†)
    • Niehuis O, Naumann CM (†), Misof B (2006a) Identification of evolutionary conserved structural elements in the mt SSU rRNA of Zygaenoidea (Lepidoptera): a comparative sequence analysis. ODE 6 : 17 32.
    • (2006) ODE , vol.6 , pp. 17-32
    • Niehuis, O.1    Naumann, C.M.2    Misof, B.3
  • 58
    • 33646428355 scopus 로고    scopus 로고
    • Higher phylogeny of zygaenid moths (Insecta: Lepidoptera) inferred from nuclear and mitochondrial sequence data and the evolution of cuticular cavities for chemical defence
    • Niehuis O, Yen S-H, Naumann CM, Misof B (2006b) Higher phylogeny of zygaenid moths (Insecta: Lepidoptera) inferred from nuclear and mitochondrial sequence data and the evolution of cuticular cavities for chemical defence. Mol Phylogenet Evol 39 : 812 829.
    • (2006) Mol Phylogenet Evol , vol.39 , pp. 812-829
    • Niehuis, O.1    Yen, S.-H.2    Naumann, C.M.3    Misof, B.4
  • 60
    • 0142167519 scopus 로고    scopus 로고
    • The problem with 'the Paleoptera Problem' sense and sensitivity
    • Ogden TH, Whiting MF (2003) The problem with 'the Paleoptera Problem' sense and sensitivity. Cladistics 19 : 432 442.
    • (2003) Cladistics , vol.19 , pp. 432-442
    • Ogden, T.H.1    Whiting, M.F.2
  • 61
    • 0033775948 scopus 로고    scopus 로고
    • 18S rRNA secondary structure and phylogenetic position of Peloridiidae (Insecta, Hemiptera)
    • Ouvrard D, Campbell BC, Bourgoin T, Chan KL (2000) 18S rRNA secondary structure and phylogenetic position of Peloridiidae (Insecta, Hemiptera). Mol Phylogenet Evol 16 : 403 417.
    • (2000) Mol Phylogenet Evol , vol.16 , pp. 403-417
    • Ouvrard, D.1    Campbell, B.C.2    Bourgoin, T.3    Chan, K.L.4
  • 62
    • 0034667925 scopus 로고    scopus 로고
    • Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching
    • Page RDM (2000) Comparative analysis of secondary structure of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching. Nucleic Acids Res 28 : 389 3845.
    • (2000) Nucleic Acids Res , vol.28 , pp. 389-3845
    • Page, R.D.M.1
  • 63
    • 0035984509 scopus 로고    scopus 로고
    • Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable
    • Page RDM, Cruickshank R, Johnson KP (2002) Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable. Insect Mol Biol 11 : 361 369.
    • (2002) Insect Mol Biol , vol.11 , pp. 361-369
    • Page, R.D.M.1    Cruickshank, R.2    Johnson, K.P.3
  • 64
    • 0033980890 scopus 로고    scopus 로고
    • Comparative sequence analysis and patterns of covariation in RNA secondary structures
    • Parsch J, Braverman JM, Stephan W (2000) Comparative sequence analysis and patterns of covariation in RNA secondary structures. Genetics 154 : 909 921.
    • (2000) Genetics , vol.154 , pp. 909-921
    • Parsch, J.1    Braverman, J.M.2    Stephan, W.3
  • 65
    • 0001135867 scopus 로고
    • Contributions of functional morphology to the phylogenetic systematics of Odonata
    • Pfau HK (1991) Contributions of functional morphology to the phylogenetic systematics of Odonata. Adv Odonatol 5 : 109 141.
    • (1991) Adv Odonatol , vol.5 , pp. 109-141
    • Pfau, H.K.1
  • 66
    • 84988968013 scopus 로고    scopus 로고
    • Structure, function and evolution of the glans of the anisopteran vesica spermalis (Odonata)
    • Pfau HK (2005) Structure, function and evolution of the glans of the anisopteran vesica spermalis (Odonata). Odonatology 8 : 259 310.
    • (2005) Odonatology , vol.8 , pp. 259-310
    • Pfau, H.K.1
  • 67
    • 9644301241 scopus 로고    scopus 로고
    • Model selection and model averaging in phylogenetics: Advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests
    • Posada D, Buckley TR (2004) Model selection and model averaging in phylogenetics: advantages of akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst Biol 53 : 793 808.
    • (2004) Syst Biol , vol.53 , pp. 793-808
    • Posada, D.1    Buckley, T.R.2
  • 68
    • 0037398480 scopus 로고    scopus 로고
    • Phylogenetic analysis of higher-level relationships of Odonata
    • Rehn A (2003) Phylogenetic analysis of higher-level relationships of Odonata. Syst Entomol 28 : 181 239.
    • (2003) Syst Entomol , vol.28 , pp. 181-239
    • Rehn, A.1
  • 69
    • 33644832331 scopus 로고    scopus 로고
    • Between two extremes: Mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference
    • Rubinoff D, Holland BS (2005) Between two extremes: Mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Syst Biol 54 : 952 961.
    • (2005) Syst Biol , vol.54 , pp. 952-961
    • Rubinoff, D.1    Holland, B.S.2
  • 70
    • 0029091043 scopus 로고
    • Estimating substitution rates in ribosomal RNA
    • Rzhetsky A (1995) Estimating substitution rates in ribosomal RNA. Genetics 141 : 771 783.
    • (1995) Genetics , vol.141 , pp. 771-783
    • Rzhetsky, A.1
  • 71
    • 1542377984 scopus 로고    scopus 로고
    • Phylogeny of the Dragonfly and Damselfly Order Odonata as Inferred by mitochondrial 12S ribosomal RNA sequences
    • Saux C, Simon CH, Spicer GS (2003) Phylogeny of the Dragonfly and Damselfly Order Odonata as Inferred by mitochondrial 12S ribosomal RNA sequences. Ann Entomol Soc Am 96 : 693 699.
    • (2003) Ann Entomol Soc Am , vol.96 , pp. 693-699
    • Saux, C.1    Simon, C.H.2    Spicer, G.S.3
  • 72
    • 0035156561 scopus 로고    scopus 로고
    • RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum likelihood methods
    • Savill N, Hoyle D, Higgs PG (2001) RNA sequence evolution with secondary structure constraints: comparison of substitution rate models using maximum likelihood methods. Genetics 157 : 399 411.
    • (2001) Genetics , vol.157 , pp. 399-411
    • Savill, N.1    Hoyle, D.2    Higgs, P.G.3
  • 73
    • 0028512129 scopus 로고
    • A stochastic model and the evolution of autocorrelated DNA sequences
    • Schöniger M, von Haeseler A (1994) A stochastic model and the evolution of autocorrelated DNA sequences. Mol Phylogenet Evol 3 : 240 247.
    • (1994) Mol Phylogenet Evol , vol.3 , pp. 240-247
    • Schöniger, M.1    Von Haeseler, A.2
  • 75
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann Entomol Soc Am 87 : 651 701.
    • (1994) Ann Entomol Soc Am , vol.87 , pp. 651-701
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Crespi, B.4    Liu, H.5    Flook, P.6
  • 76
    • 0041704958 scopus 로고    scopus 로고
    • An analysis of the secondary structure of the mitochondrial large subunit rRNA gene (16S) in spiders and its implications for phylogenetic reconstruction
    • Smith SD, Bond JE (2003) An analysis of the secondary structure of the mitochondrial large subunit rRNA gene (16S) in spiders and its implications for phylogenetic reconstruction. J Arachnol 31 : 44 54.
    • (2003) J Arachnol , vol.31 , pp. 44-54
    • Smith, S.D.1    Bond, J.E.2
  • 77
    • 1542614592 scopus 로고    scopus 로고
    • Empirical models for substitution in ribosomal RNA
    • Smith AD, Lui TW, Tillier ER (2004) Empirical models for substitution in ribosomal RNA. Mol Biol Evol 21 : 419 427.
    • (2004) Mol Biol Evol , vol.21 , pp. 419-427
    • Smith, A.D.1    Lui, T.W.2    Tillier, E.R.3
  • 78
    • 0029784930 scopus 로고    scopus 로고
    • The rate of compensatory evolution
    • Stephan W (1996) The rate of compensatory evolution. Genetics 144 : 419 426.
    • (1996) Genetics , vol.144 , pp. 419-426
    • Stephan, W.1
  • 80
    • 16344384719 scopus 로고    scopus 로고
    • Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the Bilateria
    • Telford MJ, Wise MJ, Gowri-Shankar V (2005) Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the Bilateria. Mol Biol Evol 22 : 1129 1136.
    • (2005) Mol Biol Evol , vol.22 , pp. 1129-1136
    • Telford, M.J.1    Wise, M.J.2    Gowri-Shankar, V.3
  • 81
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24 : 4876 4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 82
    • 0028874337 scopus 로고
    • Neighbor joining and the maximum likelihood with RNA sequences: Addressing the interdependence of sites
    • Tillier ERM, Collins RA (1995) Neighbor joining and the maximum likelihood with RNA sequences: addressing the interdependence of sites. Mol Biol Evol 12 : 7 15.
    • (1995) Mol Biol Evol , vol.12 , pp. 7-15
    • Tillier, E.R.M.1    Collins, R.A.2
  • 83
    • 0031894830 scopus 로고    scopus 로고
    • High apparent rate of simultaneous compensatory base pair substitutions in ribosomal RNA
    • Tillier ERM, Collins RA (1998) High apparent rate of simultaneous compensatory base pair substitutions in ribosomal RNA. Genetics 148 : 1993 2002.
    • (1998) Genetics , vol.148 , pp. 1993-2002
    • Tillier, E.R.M.1    Collins, R.A.2
  • 85
    • 0001802797 scopus 로고    scopus 로고
    • A preliminary cladistic analysis of odonate wing venation
    • Trueman JWH (1996) A preliminary cladistic analysis of odonate wing venation. Odonatologica 25 : 59 72.
    • (1996) Odonatologica , vol.25 , pp. 59-72
    • Trueman, J.W.H.1
  • 86
    • 0036148235 scopus 로고    scopus 로고
    • Secondary structure of mitochondrial 12S rRNA among fish and its phylogenetic applications
    • Wang HY, Lee SC (2002) Secondary structure of mitochondrial 12S rRNA among fish and its phylogenetic applications. Mol Biol Evol 19 : 138 148.
    • (2002) Mol Biol Evol , vol.19 , pp. 138-148
    • Wang, H.Y.1    Lee, S.C.2
  • 87
    • 34548513306 scopus 로고    scopus 로고
    • Phylogeny of the higher Libelluloidea (Anisoptera: Odonata): an exploration of the most speciose superfamily of dragonflies
    • Ware J, May M, Kjer K (2007) Phylogeny of the higher Libelluloidea (Anisoptera: Odonata): an exploration of the most speciose superfamily of dragonflies. Mol Phylogenet Evol 45 : 289 310.
    • (2007) Mol Phylogenet Evol , vol.45 , pp. 289-310
    • Ware, J.1    May, M.2    Kjer, K.3
  • 88
    • 0023672228 scopus 로고
    • Paired sequence difference in ribosomal RNAs: Evolutionary and phylogenetic implications
    • Wheeler WC, Honeycutt RL (1988) Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications. Mol Biol Evol 5 : 90 96.
    • (1988) Mol Biol Evol , vol.5 , pp. 90-96
    • Wheeler, W.C.1    Honeycutt, R.L.2
  • 89
    • 0034554835 scopus 로고    scopus 로고
    • Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA
    • Wuyts J, De Rijk P, Van de Peer Y, Pison G, Rousseeuw P, De Wachter R (2000) Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA. Nucleic Acids Res 28 : 4698 4708.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4698-4708
    • Wuyts, J.1    De Rijk, P.2    Van De Peer, Y.3    Pison, G.4    Rousseeuw, P.5    De Wachter, R.6
  • 91
    • 0038487293 scopus 로고    scopus 로고
    • 18S Ribosomal RNA and tetrapod phylogeny
    • Xia X, Xie Z, Kjer KM (2003) 18S Ribosomal RNA and tetrapod phylogeny. Syst Biol 52 : 283 295.
    • (2003) Syst Biol , vol.52 , pp. 283-295
    • Xia, X.1    Xie, Z.2    Kjer, K.M.3
  • 92
    • 0026350122 scopus 로고
    • Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae)
    • Xiong B, Kocher TD (1991) Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome 34 : 306 311.
    • (1991) Genome , vol.34 , pp. 306-311
    • Xiong, B.1    Kocher, T.D.2
  • 93
    • 0027132974 scopus 로고
    • Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
    • Yang Z (1993) Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol Biol Evol 10 : 1396 1401.
    • (1993) Mol Biol Evol , vol.10 , pp. 1396-1401
    • Yang, Z.1
  • 94
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39 : 306 314.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 95
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang Z (1996) Among-site rate variation and its impact on phylogenetic analyses. TREE 11 : 367 372.
    • (1996) TREE , vol.11 , pp. 367-372
    • Yang, Z.1
  • 96
    • 12444337674 scopus 로고    scopus 로고
    • Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics
    • Zwickl D, Holder M (2004) Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics. Syst Biol 53 : 877 888.
    • (2004) Syst Biol , vol.53 , pp. 877-888
    • Zwickl, D.1    Holder, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.