메뉴 건너뛰기




Volumn 3, Issue 9, 2008, Pages

Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment

Author keywords

[No Author keywords available]

Indexed keywords

CELL SURFACE PROTEIN; POLYMER;

EID: 53249097845     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0003252     Document Type: Article
Times cited : (108)

References (96)
  • 1
    • 10644274571 scopus 로고    scopus 로고
    • Marine biofouling on fish farms and its remediation
    • Braithwaite RA, McEvoy LA (2005) Marine biofouling on fish farms and its remediation. Adv Mar Biol 47: 215-252.
    • (2005) Adv Mar Biol , vol.47 , pp. 215-252
    • Braithwaite, R.A.1    McEvoy, L.A.2
  • 3
    • 34848927160 scopus 로고    scopus 로고
    • Marine Biofilms as Mediators of Colonization by Marine Macroorganisms: Implications for Antifouling and Aquaculture
    • Qian PY, Lau S, Dahms HU, Dobretsov S, Harder T (2007) Marine Biofilms as Mediators of Colonization by Marine Macroorganisms: Implications for Antifouling and Aquaculture. Mar Biotechnol 9: 399-410.
    • (2007) Mar Biotechnol , vol.9 , pp. 399-410
    • Qian, P.Y.1    Lau, S.2    Dahms, H.U.3    Dobretsov, S.4    Harder, T.5
  • 4
    • 45849141570 scopus 로고    scopus 로고
    • Unlocking the diversity and biotechnological potential of marine surface associated microbial communities
    • Egan S, Thomas T, Kjelleberg S (2008) Unlocking the diversity and biotechnological potential of marine surface associated microbial communities. Curr Opinion Microbiol 11: 219-225.
    • (2008) Curr Opinion Microbiol , vol.11 , pp. 219-225
    • Egan, S.1    Thomas, T.2    Kjelleberg, S.3
  • 5
    • 33746344979 scopus 로고    scopus 로고
    • Effect of alginic acid decomposing bacterium on the growth of Laminaria japonica (Phaeophyceae)
    • Wang Y, Tang XX, Yang Z, Yu ZM (2006) Effect of alginic acid decomposing bacterium on the growth of Laminaria japonica (Phaeophyceae). J Environ Sci 18: 543-551.
    • (2006) J Environ Sci , vol.18 , pp. 543-551
    • Wang, Y.1    Tang, X.X.2    Yang, Z.3    Yu, Z.M.4
  • 6
    • 34248512288 scopus 로고    scopus 로고
    • Sponge disease: A global threat?
    • Webster NS (2007) Sponge disease: a global threat? Environ Microbiol 9: 1363-1375.
    • (2007) Environ Microbiol , vol.9 , pp. 1363-1375
    • Webster, N.S.1
  • 7
    • 37749048453 scopus 로고    scopus 로고
    • Bioactive compound synthetic capacity and ecological significance of marine bacterial genus Pseudoalteromonas . Mar
    • Bowman JP (2007) Bioactive compound synthetic capacity and ecological significance of marine bacterial genus Pseudoalteromonas . Mar Drugs 5: 220-241.
    • (2007) Drugs , vol.5 , pp. 220-241
    • Bowman, J.P.1
  • 8
    • 0029741788 scopus 로고    scopus 로고
    • Purification and characterization of a novel anti-bacterial protein from the marine bacterium D2
    • James S, Holmström C, Kjelleberg S (1996) Purification and characterization of a novel anti-bacterial protein from the marine bacterium D2. Appl Environ Microbiol 62: 2783-2788.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2783-2788
    • James, S.1    Holmström, C.2    Kjelleberg, S.3
  • 9
    • 0026616606 scopus 로고
    • Inhibition of attachment of larval barnacles, Balanus amphitrite and Giona intestinalis a surface colonizing marine bacterium
    • Holmström C, Rittschof D, Kjelleberg S (1992) Inhibition of attachment of larval barnacles, Balanus amphitrite and Giona intestinalis a surface colonizing marine bacterium. Appl Environ Microbiol 58: 2111-2115.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2111-2115
    • Holmström, C.1    Rittschof, D.2    Kjelleberg, S.3
  • 10
    • 0035021526 scopus 로고    scopus 로고
    • Inhibition of algal spore germination by the marine bacterium Pseudoalteromonas tunicata
    • Egan S, James S, Holmström C, Kjelleberg S (2001) Inhibition of algal spore germination by the marine bacterium Pseudoalteromonas tunicata. FEMS Microbiol Ecol 35: 67-73.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 67-73
    • Egan, S.1    James, S.2    Holmström, C.3    Kjelleberg, S.4
  • 11
    • 33644799519 scopus 로고    scopus 로고
    • Isolation and structure elucidation of a novel yellow pigment from the marine bacterium Pseudoalteromonas tunicata
    • Franks A, Haywood P, Holmström C, Egan S, Kjelleberg S, et al. (2005) Isolation and structure elucidation of a novel yellow pigment from the marine bacterium Pseudoalteromonas tunicata. Molecules 10: 1286-1291.
    • (2005) Molecules , vol.10 , pp. 1286-1291
    • Franks, A.1    Haywood, P.2    Holmström, C.3    Egan, S.4    Kjelleberg, S.5
  • 12
    • 33748788510 scopus 로고    scopus 로고
    • Inhibition of fungal colonization by Pseudoalteromonas tunicata provides a competitive advantage during surface colonization
    • Franks A, Egan S, Holmström C, James S, Lappin-Scott H, et al. (2006) Inhibition of fungal colonization by Pseudoalteromonas tunicata provides a competitive advantage during surface colonization. Appl Environ Microbiol 72: 6079-6087.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6079-6087
    • Franks, A.1    Egan, S.2    Holmström, C.3    James, S.4    Lappin-Scott, H.5
  • 14
    • 37349010347 scopus 로고    scopus 로고
    • Low densities of epiphytic bacteria from the marine alga Ulva australis inhibit settlement of fouling organisms
    • Rao D, Webb JS, Holmström C, Case R, Low A, et al. (2007) Low densities of epiphytic bacteria from the marine alga Ulva australis inhibit settlement of fouling organisms. Appl Environ Microbiol 73: 7844-7852.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 7844-7852
    • Rao, D.1    Webb, J.S.2    Holmström, C.3    Case, R.4    Low, A.5
  • 15
    • 17444365494 scopus 로고    scopus 로고
    • Competitive Interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata
    • Rao D, Webb JS, Kjelleberg S (2005) Competitive Interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata. Appl Environ Microbiol 71: 1729-1736.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1729-1736
    • Rao, D.1    Webb, J.S.2    Kjelleberg, S.3
  • 16
    • 33746605947 scopus 로고    scopus 로고
    • A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes
    • Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, et al. (2006) A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci USA 103: 11240-11245.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 11240-11245
    • Goldberg, S.M.1    Johnson, J.2    Busam, D.3    Feldblyum, T.4    Ferriera, S.5
  • 19
    • 0035175673 scopus 로고    scopus 로고
    • TIGRFAMs: A protein family resource for the functional identification of proteins
    • Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, et al. (2001) TIGRFAMs: A protein family resource for the functional identification of proteins. Nucleic Acids Res 29: 41-43.
    • (2001) Nucleic Acids Res , vol.29 , pp. 41-43
    • Haft, D.H.1    Loftus, B.J.2    Richardson, D.L.3    Yang, F.4    Eisen, J.A.5
  • 22
    • 27544456832 scopus 로고    scopus 로고
    • Complete reannotation of the Arabidopsis genome: Methods, tools, protocols and the final release
    • Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK Jr, et al. (2005) Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release. BMC Biol 3: 7.
    • (2005) BMC Biol , vol.3 , pp. 7
    • Haas, B.J.1    Wortman, J.R.2    Ronning, C.M.3    Hannick, L.I.4    Smith Jr, R.K.5
  • 23
    • 36549045514 scopus 로고    scopus 로고
    • Comparative genome analysis in the integrated microbial genomes (IMG) system
    • Markowitz VM, Kyrpides NC (2007) Comparative genome analysis in the integrated microbial genomes (IMG) system. Methods Mol Biol 395: 35-56.
    • (2007) Methods Mol Biol , vol.395 , pp. 35-56
    • Markowitz, V.M.1    Kyrpides, N.C.2
  • 24
    • 33748689309 scopus 로고    scopus 로고
    • Interpolated variable order motifs for identification of horizontally acquired DNA: Revisiting the Salmonella pathogenicity islands
    • Vernikos GS, Parkhill J (2006) Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands. Bioinformatics. pp 2196-2203.
    • (2006) Bioinformatics , pp. 2196-2203
    • Vernikos, G.S.1    Parkhill, J.2
  • 25
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa I, Vergnaud G, CP (2007) CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 35: w52-57.
    • (2007) Nucleic Acids Res , vol.35
    • Grissa, I.1    Vergnaud, G.C.2
  • 27
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer ELL (2001) Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J Mol Biol 305: 567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.L.4
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 29
    • 33646774677 scopus 로고    scopus 로고
    • Unravelling the role of the ToxR-like transcriptional regulator WmpR in the marine antifouling bacterium Pseudoalteromonas tunicata
    • Stelzer S, Egan S, Larsen MR, Bartlett DH, Kjelleberg S (2006) Unravelling the role of the ToxR-like transcriptional regulator WmpR in the marine antifouling bacterium Pseudoalteromonas tunicata. Microbiol 152: 1385-1394.
    • (2006) Microbiol , vol.152 , pp. 1385-1394
    • Stelzer, S.1    Egan, S.2    Larsen, M.R.3    Bartlett, D.H.4    Kjelleberg, S.5
  • 30
    • 0036048808 scopus 로고    scopus 로고
    • Correlation between pigmentation and antifouling compounds produced by Pseudoalteromonas tunicata
    • Egan S, James S, Holmström C, Kjelleberg S (2002) Correlation between pigmentation and antifouling compounds produced by Pseudoalteromonas tunicata. Environ Microbiol 4: 433-442.
    • (2002) Environ Microbiol , vol.4 , pp. 433-442
    • Egan, S.1    James, S.2    Holmström, C.3    Kjelleberg, S.4
  • 31
    • 33947238287 scopus 로고    scopus 로고
    • The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
    • Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, et al. (2007) The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biology 5: e77.
    • (2007) PLoS Biology , vol.5
    • Rusch, D.B.1    Halpern, A.L.2    Sutton, G.3    Heidelberg, K.B.4    Williamson, S.5
  • 33
    • 11144354360 scopus 로고    scopus 로고
    • Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
    • Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
  • 35
    • 33846895863 scopus 로고    scopus 로고
    • Chromosomal context directs high-frequency precise excision of IS492 in Pseudoalteromonas atlantica
    • Higgins BP, Carpenter CD, Karls AC (2007) Chromosomal context directs high-frequency precise excision of IS492 in Pseudoalteromonas atlantica. Proc Natl Acad Sci USA 104: 1901-1906.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 1901-1906
    • Higgins, B.P.1    Carpenter, C.D.2    Karls, A.C.3
  • 36
    • 0024636539 scopus 로고
    • Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica
    • Bartlett DH, Silverman M (1989) Nucleotide sequence of IS492, a novel insertion sequence causing variation in extracellular polysaccharide production in the marine bacterium Pseudomonas atlantica. J Bacteriol 171: 1763-1766.
    • (1989) J Bacteriol , vol.171 , pp. 1763-1766
    • Bartlett, D.H.1    Silverman, M.2
  • 37
    • 0031733570 scopus 로고    scopus 로고
    • Identification of a marine agarolytic Pseudoalteromonas isolate and characterization of its extracellular agarase
    • Vera J, Alvarez R, Murano E, Slebe JC, Leon O (1998) Identification of a marine agarolytic Pseudoalteromonas isolate and characterization of its extracellular agarase. Appl Environ Microbiol 64: 4378-4383.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4378-4383
    • Vera, J.1    Alvarez, R.2    Murano, E.3    Slebe, J.C.4    Leon, O.5
  • 38
    • 0032562596 scopus 로고    scopus 로고
    • A distinctive class of integron in the Vibrio cholerae genome
    • Mazel D, Dychinco B, Webb VA, Davies J (1998) A distinctive class of integron in the Vibrio cholerae genome. Science 280: 605-608.
    • (1998) Science , vol.280 , pp. 605-608
    • Mazel, D.1    Dychinco, B.2    Webb, V.A.3    Davies, J.4
  • 40
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • Haft DH, Selengut J, Mongodin EF, Nelson KE (2005) A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol 1: e60.
    • (2005) PLoS Comput Biol , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 41
    • 34248374277 scopus 로고    scopus 로고
    • A putative RNA-interference-based immune system in prokaryotes: Computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action
    • Makarova KS, Grishin NV, Shabalina SA, Wolf YI, Koonin EV (2006) A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol Direct 16: 1-7.
    • (2006) Biol Direct , vol.16 , pp. 1-7
    • Makarova, K.S.1    Grishin, N.V.2    Shabalina, S.A.3    Wolf, Y.I.4    Koonin, E.V.5
  • 43
    • 26844531178 scopus 로고    scopus 로고
    • Salmonella enterica virulence genes are required for bacterial attachment to plant tissue
    • Barak J, Gorski L, Naraghi-Arani P, Charkowski A (2005) Salmonella enterica virulence genes are required for bacterial attachment to plant tissue. Appl Environ Microbiol 71: 5685-5691.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 5685-5691
    • Barak, J.1    Gorski, L.2    Naraghi-Arani, P.3    Charkowski, A.4
  • 44
    • 26944499382 scopus 로고    scopus 로고
    • Characterization of the binding of diarrheagenic strains of E. coli to plant surfaces and the role of curli in the interaction of the bacteria with alfalfa sprouts
    • Jeter C, Matthysse A (2005) Characterization of the binding of diarrheagenic strains of E. coli to plant surfaces and the role of curli in the interaction of the bacteria with alfalfa sprouts. Mol Plant Microbe Interact 18: 1235-1242.
    • (2005) Mol Plant Microbe Interact , vol.18 , pp. 1235-1242
    • Jeter, C.1    Matthysse, A.2
  • 45
    • 33749639068 scopus 로고    scopus 로고
    • A mannose-sensitive haemagglutinin (MSHA)-like pilus promotes attachment of Pseudoalteromonas tunicata cells to the surface of the green alga Ulva australis
    • Dalisay DS, Webb JS, Scheffel A, Svenson C, James S, et al. (2006) A mannose-sensitive haemagglutinin (MSHA)-like pilus promotes attachment of Pseudoalteromonas tunicata cells to the surface of the green alga Ulva australis. Microbiol 152: 2875-2883.
    • (2006) Microbiol , vol.152 , pp. 2875-2883
    • Dalisay, D.S.1    Webb, J.S.2    Scheffel, A.3    Svenson, C.4    James, S.5
  • 46
    • 0027937510 scopus 로고
    • The pilE gene product of Pseudomonas aeruginosa, required for pilus biogenesis, shares amino acid sequence identity with the N-termini of type 4 prepilin proteins
    • Russell MA, Darzins A (1994) The pilE gene product of Pseudomonas aeruginosa, required for pilus biogenesis, shares amino acid sequence identity with the N-termini of type 4 prepilin proteins. Mol Microbiol 13: 973.
    • (1994) Mol Microbiol , vol.13 , pp. 973
    • Russell, M.A.1    Darzins, A.2
  • 47
    • 0028985650 scopus 로고
    • Comparison of type IV-pilin genes of Pseudomonas aeruginosa of various habitats has uncovered a novel unusual sequence
    • Spangenberg C, Fislage R, Sierralta W, Tummler B, Romling U (1995) Comparison of type IV-pilin genes of Pseudomonas aeruginosa of various habitats has uncovered a novel unusual sequence. FEMS Microbiol Lett 125: 265-273.
    • (1995) FEMS Microbiol Lett , vol.125 , pp. 265-273
    • Spangenberg, C.1    Fislage, R.2    Sierralta, W.3    Tummler, B.4    Romling, U.5
  • 48
    • 33644916430 scopus 로고    scopus 로고
    • The Pseudomonas aeruginosa ribbon-helix-helix DNA-binding protein AlgZ (AmrZ) controls twitching motility and biogenesis of type IV pili
    • Baynham PJ, Ramsey DM, Gvozdyev BV, Cordonnier EM, Wozniak DJ (2006) The Pseudomonas aeruginosa ribbon-helix-helix DNA-binding protein AlgZ (AmrZ) controls twitching motility and biogenesis of type IV pili. J Bacteriol 188: 132-140.
    • (2006) J Bacteriol , vol.188 , pp. 132-140
    • Baynham, P.J.1    Ramsey, D.M.2    Gvozdyev, B.V.3    Cordonnier, E.M.4    Wozniak, D.J.5
  • 49
    • 33846120671 scopus 로고    scopus 로고
    • The mviN homolog in Burkholderia pseudomallei is essential for viability and virulence
    • Ling JM, Moore RA, Surette MG, Woods DE (2006) The mviN homolog in Burkholderia pseudomallei is essential for viability and virulence. Can J Microbiol 52: 831-842.
    • (2006) Can J Microbiol , vol.52 , pp. 831-842
    • Ling, J.M.1    Moore, R.A.2    Surette, M.G.3    Woods, D.E.4
  • 51
    • 0037389451 scopus 로고    scopus 로고
    • The REP2 Repeats of the Genome of Neisseria meningitidis are associated with genes coordinately regulated during bacterial cell interaction
    • Morelle S, Carbonnelle E, Nassif X (2003) The REP2 Repeats of the Genome of Neisseria meningitidis are associated with genes coordinately regulated during bacterial cell interaction. J Bacteriol 185: 2618-2627.
    • (2003) J Bacteriol , vol.185 , pp. 2618-2627
    • Morelle, S.1    Carbonnelle, E.2    Nassif, X.3
  • 52
    • 42949159838 scopus 로고    scopus 로고
    • LipL32 is an extracellular matrix-interacting protein of Leptospira and Pseudoalteromonas tunicata
    • Hoke D, Egan S, Cullen PA, Adler B (2008) LipL32 is an extracellular matrix-interacting protein of Leptospira and Pseudoalteromonas tunicata. Infection and Immunity 76: 2063-2069.
    • (2008) Infection and Immunity , vol.76 , pp. 2063-2069
    • Hoke, D.1    Egan, S.2    Cullen, P.A.3    Adler, B.4
  • 54
    • 0031947495 scopus 로고    scopus 로고
    • The wzz (cld) protein in Escherichia coli: Amino acid sequence variation determines O-antigen chain length specificity
    • Franco AV, Liu D, Reeves PR (1998) The wzz (cld) protein in Escherichia coli: amino acid sequence variation determines O-antigen chain length specificity. J Bacteriol 180: 2670-2675.
    • (1998) J Bacteriol , vol.180 , pp. 2670-2675
    • Franco, A.V.1    Liu, D.2    Reeves, P.R.3
  • 55
    • 33846968804 scopus 로고    scopus 로고
    • The use of functional genomics for the identification of a gene cluster encoding for the biosynthesis of an antifungal tambjamine in the marine bacterium Pseudoalteromonas tunicata
    • Burke C, Thomas T, Egan S, Kjelleberg S (2007) The use of functional genomics for the identification of a gene cluster encoding for the biosynthesis of an antifungal tambjamine in the marine bacterium Pseudoalteromonas tunicata. Environ Microbiol 9: 814-818.
    • (2007) Environ Microbiol , vol.9 , pp. 814-818
    • Burke, C.1    Thomas, T.2    Egan, S.3    Kjelleberg, S.4
  • 56
    • 33845934004 scopus 로고    scopus 로고
    • In vitro biosynthesis of violacein from L-Tryptophan by the enzymes VioA-E from Chromobacterium violaceum
    • Balibar CJ, Walsh CT (2006) In vitro biosynthesis of violacein from L-Tryptophan by the enzymes VioA-E from Chromobacterium violaceum. Biochem 45: 15444-15457.
    • (2006) Biochem , vol.45 , pp. 15444-15457
    • Balibar, C.J.1    Walsh, C.T.2
  • 58
    • 0035807805 scopus 로고    scopus 로고
    • RelE, a global inhibitor of translation, is activated during nutritional stress
    • Christensen SK, Mikkelsen M, Pedersen K, Gerdes K (2001) RelE, a global inhibitor of translation, is activated during nutritional stress. Proc Nat Acad Sci USA 98: 14328-14333.
    • (2001) Proc Nat Acad Sci USA , vol.98 , pp. 14328-14333
    • Christensen, S.K.1    Mikkelsen, M.2    Pedersen, K.3    Gerdes, K.4
  • 59
    • 9244234513 scopus 로고    scopus 로고
    • Biosynthesis of nonribosomal peptides
    • Finking R, Marahiel MA (2004) Biosynthesis of nonribosomal peptides. Ann Rev Microbiol 58: 453-488.
    • (2004) Ann Rev Microbiol , vol.58 , pp. 453-488
    • Finking, R.1    Marahiel, M.A.2
  • 60
    • 25844462537 scopus 로고    scopus 로고
    • Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
    • Medigue C, Krin E, Pascal G, Barbe V, Bernsel A, et al. (2005) Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125. Genome Res 15: 1325-1335.
    • (2005) Genome Res , vol.15 , pp. 1325-1335
    • Medigue, C.1    Krin, E.2    Pascal, G.3    Barbe, V.4    Bernsel, A.5
  • 62
    • 48149097054 scopus 로고    scopus 로고
    • Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, et al. (2008) Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several Gram negative bacteria. J Bacteriol. JB.00549-00508.
    • Mai-Prochnow A, Lucas-Elio P, Egan S, Thomas T, Webb JS, et al. (2008) Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several Gram negative bacteria. J Bacteriol. JB.00549-00508.
  • 63
    • 0028965483 scopus 로고
    • Molecular genetics of a chromosomal locus involved in copper tolerance in Escherichia coli K-12
    • Fong ST, Camakaris J, Lee BT (1995) Molecular genetics of a chromosomal locus involved in copper tolerance in Escherichia coli K-12. Mol Microbiol 15: 1127-1137.
    • (1995) Mol Microbiol , vol.15 , pp. 1127-1137
    • Fong, S.T.1    Camakaris, J.2    Lee, B.T.3
  • 64
    • 0030574276 scopus 로고    scopus 로고
    • Bacterial resistances to toxic metal ions-a review
    • Silver S (1996) Bacterial resistances to toxic metal ions-a review. Gene 179: 9-19.
    • (1996) Gene , vol.179 , pp. 9-19
    • Silver, S.1
  • 65
    • 0038681420 scopus 로고    scopus 로고
    • Unusual rise in mercury-resistant bacteria in coastal environs
    • Ramaiah N, De J (2003) Unusual rise in mercury-resistant bacteria in coastal environs. Microb Ecol 45: 444-454.
    • (2003) Microb Ecol , vol.45 , pp. 444-454
    • Ramaiah, N.1    De, J.2
  • 66
    • 0036584770 scopus 로고    scopus 로고
    • Tolerance to cadmium of free-living and associated with marine animals and eelgrass marine gamma-proteobacteria
    • Ivanova EP, Kurilenko VV, Kurilenko AV, Gorshkova NM, Shubin FN, et al. (2002) Tolerance to cadmium of free-living and associated with marine animals and eelgrass marine gamma-proteobacteria. Curr Microbiol 44: 357-362.
    • (2002) Curr Microbiol , vol.44 , pp. 357-362
    • Ivanova, E.P.1    Kurilenko, V.V.2    Kurilenko, A.V.3    Gorshkova, N.M.4    Shubin, F.N.5
  • 67
    • 34250724454 scopus 로고    scopus 로고
    • Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary
    • Chiu HH, Shieh WY, Lin SY, Tseng CM, Chiang PW, et al. (2007) Alteromonas tagae sp. nov. and Alteromonas simiduii sp. nov., mercury-resistant bacteria isolated from a Taiwanese estuary. Int J Syst Evol Microbiol 57: 1209-1016.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 1209-1016
    • Chiu, H.H.1    Shieh, W.Y.2    Lin, S.Y.3    Tseng, C.M.4    Chiang, P.W.5
  • 68
    • 0026616183 scopus 로고
    • Intense hydrolytic enzyme-activity on marine aggregates and implications for rapid particle dissolution
    • Smith DC, Simon M, Alldredge AL, Azam F (1992) Intense hydrolytic enzyme-activity on marine aggregates and implications for rapid particle dissolution. Nature 359: 139-142.
    • (1992) Nature , vol.359 , pp. 139-142
    • Smith, D.C.1    Simon, M.2    Alldredge, A.L.3    Azam, F.4
  • 69
    • 33750907710 scopus 로고    scopus 로고
    • Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii reveals adaptations to degradation of polymeric organic matter
    • Bauer M, Kube M, Teeling H, Richter M, Lombardot T, et al. (2006) Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii reveals adaptations to degradation of polymeric organic matter. Environ Microbiol 8: 2201-2213.
    • (2006) Environ Microbiol , vol.8 , pp. 2201-2213
    • Bauer, M.1    Kube, M.2    Teeling, H.3    Richter, M.4    Lombardot, T.5
  • 70
    • 0027801562 scopus 로고
    • Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages
    • DeLong EF, Franks DG, Alldredge AL (1993) Phylogenetic diversity of aggregate-attached vs free-living marine bacterial assemblages. Limnol Oceanogr 38: 924-934.
    • (1993) Limnol Oceanogr , vol.38 , pp. 924-934
    • DeLong, E.F.1    Franks, D.G.2    Alldredge, A.L.3
  • 71
    • 0033818171 scopus 로고    scopus 로고
    • Signal peptide-dependent protein transport in Bacillus subtilis: A genome-based survey of the secretome
    • Tjalsma HA, Bolhuis A, Jongbloed DH, Bron S, Dijl JMV (2000) Signal peptide-dependent protein transport in Bacillus subtilis: a genome-based survey of the secretome. Microbiol Mol Biol Rev 64: 515-547.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 515-547
    • Tjalsma, H.A.1    Bolhuis, A.2    Jongbloed, D.H.3    Bron, S.4    Dijl, J.M.V.5
  • 72
    • 15944366553 scopus 로고    scopus 로고
    • Profiling the secretomes of plant pathogenic Proteobacteria
    • Preston GM, Studholme DJ, Caldelari I (2005) Profiling the secretomes of plant pathogenic Proteobacteria. FEMS Microbiol Rev 29: 331-360.
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 331-360
    • Preston, G.M.1    Studholme, D.J.2    Caldelari, I.3
  • 73
    • 33244496489 scopus 로고    scopus 로고
    • Evolution and development of the chordates: Collagen and Phyngeal cartilage
    • Rychel AL, Smith SE, Shimamom HT, Swalla BJ (2005) Evolution and development of the chordates: collagen and Phyngeal cartilage. Mol Biol Evol 23: 541-549.
    • (2005) Mol Biol Evol , vol.23 , pp. 541-549
    • Rychel, A.L.1    Smith, S.E.2    Shimamom, H.T.3    Swalla, B.J.4
  • 74
    • 0036164128 scopus 로고    scopus 로고
    • Occurrence, functions and biosynthesis of polyamides in microorganisms and biotechnological production
    • Oppermann-Sanio FB, Steinbüchel A (2002) Occurrence, functions and biosynthesis of polyamides in microorganisms and biotechnological production. Naturwissenschaften 89: 11-22.
    • (2002) Naturwissenschaften , vol.89 , pp. 11-22
    • Oppermann-Sanio, F.B.1    Steinbüchel, A.2
  • 75
    • 0032955632 scopus 로고    scopus 로고
    • Multiple genes involved in chitin degradation from the marine bacterium Pseudoalteromonas sp. strain S91
    • Techkarnjanaruk S, Goodman A (1999) Multiple genes involved in chitin degradation from the marine bacterium Pseudoalteromonas sp. strain S91. Microbiology 145: 925-934.
    • (1999) Microbiology , vol.145 , pp. 925-934
    • Techkarnjanaruk, S.1    Goodman, A.2
  • 76
    • 37849047464 scopus 로고    scopus 로고
    • Conservation of the chitin utilization pathway in the Vibrionaceae
    • Hunt DE, Gevers D, Vahora NM, Polz MF (2008) Conservation of the chitin utilization pathway in the Vibrionaceae.. Appl Environ Microbiol 74: 44-51.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 44-51
    • Hunt, D.E.1    Gevers, D.2    Vahora, N.M.3    Polz, M.F.4
  • 77
    • 0033290345 scopus 로고    scopus 로고
    • The structure and action of chitinases
    • Robertus JD, Monzingo AF (1999) The structure and action of chitinases. Experientia 87: 125-135.
    • (1999) Experientia , vol.87 , pp. 125-135
    • Robertus, J.D.1    Monzingo, A.F.2
  • 78
    • 36849054549 scopus 로고    scopus 로고
    • The regulator CdsS/CdsR two-component system modulates expression of genes involved in chitin degradation of Pseudoalteromonas piscicida strain 0-7
    • Miyamoto K, Okunishi M, Nukui E, Tsuchiya T, Kobayashi T, et al. (2007) The regulator CdsS/CdsR two-component system modulates expression of genes involved in chitin degradation of Pseudoalteromonas piscicida strain 0-7. Arch Microbiol 188: 619-628.
    • (2007) Arch Microbiol , vol.188 , pp. 619-628
    • Miyamoto, K.1    Okunishi, M.2    Nukui, E.3    Tsuchiya, T.4    Kobayashi, T.5
  • 79
    • 0032835983 scopus 로고    scopus 로고
    • Molecular analysis of the gene encoding a novel transglycosylative enzyme from Alteromonas sp. Strain O-7 and its physiological role in the chitinolytic system
    • Tsujibo H, Kondo N, Tanaka K, Miyamoto K, Baba N, et al. (1999) Molecular analysis of the gene encoding a novel transglycosylative enzyme from Alteromonas sp. Strain O-7 and its physiological role in the chitinolytic system. J Bacteriol 181: 5461-5466.
    • (1999) J Bacteriol , vol.181 , pp. 5461-5466
    • Tsujibo, H.1    Kondo, N.2    Tanaka, K.3    Miyamoto, K.4    Baba, N.5
  • 80
    • 10444221885 scopus 로고    scopus 로고
    • Chitinase gene sequences retrieved from diverse aquatic habitats reveal environment-specific distributions
    • LeCleir GR, Buchan A, Hollibaugh JT (2004) Chitinase gene sequences retrieved from diverse aquatic habitats reveal environment-specific distributions. Appl Environ Microbiol 70: 6977-6983.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 6977-6983
    • LeCleir, G.R.1    Buchan, A.2    Hollibaugh, J.T.3
  • 81
    • 0036126147 scopus 로고    scopus 로고
    • Shell disease syndrome in the edible crab, Cancer pagurus-isolation, characterization and pathogenicity of chitinolytic bacteria
    • Vogan CL, Costa-Ramos C, Rowley AF (2002) Shell disease syndrome in the edible crab, Cancer pagurus-isolation, characterization and pathogenicity of chitinolytic bacteria. Microbiol 148: 743-754.
    • (2002) Microbiol , vol.148 , pp. 743-754
    • Vogan, C.L.1    Costa-Ramos, C.2    Rowley, A.F.3
  • 83
    • 0033916615 scopus 로고    scopus 로고
    • Culturability and in situ abundance of pelagic bacteria from the North Sea
    • Eilers H, Pernthaler J, Glöckner FO, Amann R (2000) Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl Environ Microbiol 66: 3044-3045.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3044-3045
    • Eilers, H.1    Pernthaler, J.2    Glöckner, F.O.3    Amann, R.4
  • 84
    • 0035073170 scopus 로고    scopus 로고
    • Composition and cycling of marine organic phosphorus
    • Kolowith LC, Ingall ED, Benner R (2001) Composition and cycling of marine organic phosphorus. Limnol Oceanogr 46: 309-320.
    • (2001) Limnol Oceanogr , vol.46 , pp. 309-320
    • Kolowith, L.C.1    Ingall, E.D.2    Benner, R.3
  • 85
    • 0031743420 scopus 로고    scopus 로고
    • Characterization of dissolved organic phosphorus in coastal seawater using ultrafiltration and phosphohydrolytic enzymes
    • Suzumura M, Ishikawa K, Ogawa H (1998) Characterization of dissolved organic phosphorus in coastal seawater using ultrafiltration and phosphohydrolytic enzymes. Limnol Oceanogr 43: 1553-1564.
    • (1998) Limnol Oceanogr , vol.43 , pp. 1553-1564
    • Suzumura, M.1    Ishikawa, K.2    Ogawa, H.3
  • 86
    • 0033806499 scopus 로고    scopus 로고
    • The biogeochemical cycling of phosphorus in marine systems
    • Benitez-Nelson CR (2000) The biogeochemical cycling of phosphorus in marine systems. Earth-Science Reviews 51: 109-135.
    • (2000) Earth-Science Reviews , vol.51 , pp. 109-135
    • Benitez-Nelson, C.R.1
  • 87
    • 33947606432 scopus 로고    scopus 로고
    • WmpR regulation of antifoulng compounds and iron uptake in the marine bacterium
    • PhD thesis, University of New South Wales, Australia
    • Stelzer S (2006) WmpR regulation of antifoulng compounds and iron uptake in the marine bacterium Pseudoalteromonas tunicata. PhD thesis, University of New South Wales, Australia.
    • (2006) Pseudoalteromonas tunicata
    • Stelzer, S.1
  • 88
    • 0024398149 scopus 로고
    • Protein phosphorylation and regulation of adaptive responses in bacteria
    • Stock JB, Ninfa AJ, Stock AM (1989) Protein phosphorylation and regulation of adaptive responses in bacteria. Microbiol Rev 53: 450-490.
    • (1989) Microbiol Rev , vol.53 , pp. 450-490
    • Stock, J.B.1    Ninfa, A.J.2    Stock, A.M.3
  • 89
    • 0038284769 scopus 로고    scopus 로고
    • The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans
    • Sola-Landa A, Moura RS, Martin JF (2003) The two-component PhoR-PhoP system controls both primary metabolism and secondary metabolite biosynthesis in Streptomyces lividans. Proc Nat Acad Sci USA 100: 6133-6138.
    • (2003) Proc Nat Acad Sci USA , vol.100 , pp. 6133-6138
    • Sola-Landa, A.1    Moura, R.S.2    Martin, J.F.3
  • 91
    • 1942476071 scopus 로고    scopus 로고
    • Enzymatic characterization of a prokaryotic urea carboxylase
    • Kanamori T, Kanou N, Atomi H, Imanaka T (2004) Enzymatic characterization of a prokaryotic urea carboxylase. J Bacteriol 186: 2532-2539.
    • (2004) J Bacteriol , vol.186 , pp. 2532-2539
    • Kanamori, T.1    Kanou, N.2    Atomi, H.3    Imanaka, T.4
  • 93
    • 0037150708 scopus 로고    scopus 로고
    • Climate warming and disease risks for terrestrial and marine biota
    • Harvell CD, Mitchell CE, Ward JR, Altizer S, Dobson AP, et al. (2002) Climate warming and disease risks for terrestrial and marine biota. Science 296: 2158-2162.
    • (2002) Science , vol.296 , pp. 2158-2162
    • Harvell, C.D.1    Mitchell, C.E.2    Ward, J.R.3    Altizer, S.4    Dobson, A.P.5
  • 94
    • 37549071906 scopus 로고    scopus 로고
    • Accidental virulence, cryptic pathogenesis, martians, lost hosts, and the pathogenicity of environmental microbes
    • Casadevall A, Pirofski L-A (2007) Accidental virulence, cryptic pathogenesis, martians, lost hosts, and the pathogenicity of environmental microbes. Eukaryot Cell 6: 2169-2174.
    • (2007) Eukaryot Cell , vol.6 , pp. 2169-2174
    • Casadevall, A.1    Pirofski, L.-A.2
  • 95
    • 28644442881 scopus 로고    scopus 로고
    • A colonization factor links Vibrio cholerae environmental survival and human infection
    • Kirn TJ, Jude BA, Taylor RK (2005) A colonization factor links Vibrio cholerae environmental survival and human infection. Nature 438: 863-866.
    • (2005) Nature , vol.438 , pp. 863-866
    • Kirn, T.J.1    Jude, B.A.2    Taylor, R.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.